Wall clock time and date at job start Mon Mar 30 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35903 * 117.00104 * 2 1 4 4 C 1.38751 * 120.05525 * 0.25495 * 3 2 1 5 5 C 1.38127 * 119.94222 * 180.32003 * 4 3 2 6 6 C 1.38277 * 120.05471 * 359.67809 * 5 4 3 7 7 C 1.38246 * 120.11848 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.04877 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.02818 * 179.97438 * 8 7 6 10 10 H 1.08993 * 115.56252 * 154.31095 * 9 8 7 11 11 C 1.52999 * 117.49592 * 8.62590 * 9 8 7 12 12 C 1.53000 * 60.00233 * 252.50720 * 11 9 8 13 13 H 1.09002 * 117.49664 * 107.50977 * 12 11 9 14 14 C 1.52999 * 117.50082 * 252.51550 * 12 11 9 15 15 H 1.08996 * 109.46929 * 8.59528 * 14 12 11 16 16 C 1.52997 * 109.47317 * 128.60424 * 14 12 11 17 17 C 1.50706 * 109.46573 * 248.60350 * 14 12 11 18 18 H 1.07999 * 120.00196 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 14 12 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47363 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 H 1.09001 * 109.47632 * 299.99769 * 1 2 3 26 26 H 1.09002 * 109.47185 * 59.99962 * 1 2 3 27 27 H 1.09004 * 109.47483 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.02995 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.96802 * 179.70247 * 5 4 3 30 30 H 1.08004 * 119.94352 * 179.97438 * 6 5 4 31 31 H 1.07995 * 119.97535 * 180.02562 * 7 6 5 32 32 H 1.09004 * 117.50402 * 145.02080 * 11 9 8 33 33 H 1.08999 * 117.52222 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47153 * 299.99641 * 16 14 12 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 14 12 36 36 H 1.09004 * 109.47261 * 59.99813 * 16 14 12 37 37 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0014 6 6 3.3018 3.6757 -0.0066 7 6 4.0560 2.5171 -0.0058 8 6 3.4311 1.2848 -0.0002 9 6 4.2536 0.0221 0.0002 10 1 3.7695 -0.8544 0.4305 11 6 5.7642 0.1632 0.1978 12 6 5.2036 -0.2026 -1.1780 13 1 5.2339 0.5628 -1.9535 14 6 5.4011 -1.6406 -1.6619 15 1 5.8027 -2.2454 -0.8490 16 6 4.0567 -2.2169 -2.1105 17 6 6.3647 -1.6527 -2.8206 18 1 6.7930 -0.7273 -3.1765 19 6 6.6994 -2.8453 -3.4262 20 7 6.1774 -3.9720 -2.9931 21 14 7.8943 -2.8604 -4.8620 22 1 8.3350 -1.4727 -5.1539 23 1 9.0744 -3.6924 -4.5151 24 1 7.2229 -3.4282 -6.0588 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2128 2.3204 0.0099 29 1 1.3340 4.5113 -0.0021 30 1 3.7922 4.6380 -0.0123 31 1 5.1344 2.5752 -0.0095 32 1 6.2740 -0.6206 0.7581 33 1 6.1635 1.1691 0.3271 34 1 3.3597 -2.2081 -1.2724 35 1 4.1975 -3.2412 -2.4556 36 1 3.6551 -1.6119 -2.9234 37 1 6.4127 -4.8109 -3.4195 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260871709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:09 Heat of formation + Delta-G solvation = 1.620288 kcal Electronic energy + Delta-G solvation = -17589.908545 eV Core-core repulsion = 14912.006186 eV Total energy + Delta-G solvation = -2677.902359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.12052 -37.76270 -36.58517 -33.35783 -30.85421 -29.95467 -29.26014 -27.10950 -25.09389 -23.59189 -22.25941 -21.65630 -20.14832 -18.72944 -17.96199 -16.44326 -15.94752 -15.57144 -15.38081 -14.65088 -14.27955 -13.99393 -13.59932 -13.17570 -12.66944 -12.50547 -11.95588 -11.87944 -11.76934 -11.14727 -11.10541 -10.99614 -10.88550 -10.82258 -10.53300 -10.34496 -10.10982 -9.78323 -9.38009 -8.94057 -8.72523 -8.44889 -8.24546 -7.71161 -5.90637 -3.96039 1.48764 1.61528 3.34130 3.41860 3.46116 3.46615 3.88557 4.49641 4.72145 4.88942 4.99881 5.13456 5.19370 5.20371 5.39314 5.44368 5.51483 5.54647 5.74418 5.79658 5.87142 5.93870 6.25169 6.37566 6.45527 6.60082 6.64873 6.80444 6.93296 6.96939 7.01098 7.12669 7.37888 7.52229 7.60312 7.82746 8.08751 8.25036 8.55672 9.07024 9.67718 11.15339 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.005639 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.128883 B = 4964.006578 C = 5463.265761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.305 6.305 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.098 4.098 6 C -0.155 4.155 7 C -0.090 4.090 8 C -0.059 4.059 9 C -0.128 4.128 10 H 0.110 0.890 11 C -0.181 4.181 12 C -0.092 4.092 13 H 0.089 0.911 14 C 0.069 3.931 15 H 0.027 0.973 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.011 0.989 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 11.578 7.016 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.083 3.917 4 C -0.228 4.228 5 C -0.116 4.116 6 C -0.174 4.174 7 C -0.107 4.107 8 C -0.060 4.060 9 C -0.146 4.146 10 H 0.128 0.872 11 C -0.218 4.218 12 C -0.110 4.110 13 H 0.108 0.892 14 C 0.050 3.950 15 H 0.045 0.955 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.073 0.927 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.030 0.970 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.673 11.186 6.975 16.351 hybrid contribution 0.295 0.152 -0.816 0.881 sum -9.378 11.338 6.159 15.951 Atomic orbital electron populations 1.23016 0.79144 1.03789 1.00775 1.86180 1.20595 1.26600 1.88423 1.18824 0.91715 0.84185 0.96974 1.21147 0.99626 0.92440 1.09617 1.20801 0.94647 0.96641 0.99558 1.20974 0.93865 0.98130 1.04404 1.20953 1.00261 0.91011 0.98519 1.18746 0.90043 0.94862 1.02332 1.20976 0.90462 0.95601 1.07576 0.87200 1.23115 0.94214 1.01548 1.02928 1.22848 0.97601 1.01570 0.88993 0.89245 1.18345 0.93746 0.86999 0.95877 0.95526 1.21710 0.96310 1.03222 0.97559 1.21219 1.25079 0.92918 1.15119 0.92696 1.24960 0.96309 0.95705 0.97186 1.69911 1.43856 0.97780 1.41567 0.86579 0.81055 0.77985 0.82621 1.19840 1.21121 1.21146 0.93130 0.92926 0.88357 0.85871 0.86357 0.86285 0.85240 0.88956 0.89874 0.96978 0.90296 0.95891 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.93 9.68 -19.43 -0.19 -5.11 16 3 C 0.13 2.07 6.66 -39.22 -0.26 1.81 16 4 C -0.21 -2.80 9.04 -39.43 -0.36 -3.16 16 5 C -0.10 -1.21 10.04 -39.61 -0.40 -1.61 16 6 C -0.16 -2.01 10.04 -39.56 -0.40 -2.41 16 7 C -0.09 -1.35 9.30 -39.60 -0.37 -1.72 16 8 C -0.06 -1.02 5.62 -104.47 -0.59 -1.61 16 9 C -0.13 -2.45 4.94 -91.77 -0.45 -2.90 16 10 H 0.11 2.22 7.24 -51.93 -0.38 1.85 16 11 C -0.18 -3.35 9.50 -26.73 -0.25 -3.61 16 12 C -0.09 -1.99 4.73 -90.62 -0.43 -2.42 16 13 H 0.09 1.98 8.09 -51.93 -0.42 1.56 16 14 C 0.07 1.77 2.45 -91.77 -0.23 1.54 16 15 H 0.03 0.74 7.90 -51.93 -0.41 0.33 16 16 C -0.13 -3.31 8.81 37.16 0.33 -2.98 16 17 C -0.50 -14.18 8.54 -34.44 -0.29 -14.48 16 18 H 0.05 1.53 7.73 -52.49 -0.41 1.12 16 19 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 20 N -0.89 -26.07 11.32 55.43 0.63 -25.44 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.12 1.33 6.30 -52.49 -0.33 0.99 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.13 1.82 6.02 -52.49 -0.32 1.50 16 32 H 0.09 1.72 8.05 -51.93 -0.42 1.30 16 33 H 0.08 1.34 6.18 -51.93 -0.32 1.02 16 34 H 0.01 0.27 7.29 -51.93 -0.38 -0.11 16 35 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -30.46 303.56 -8.12 -38.58 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.31 Total: 1.41 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -2.80 Total: -30.66 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.63 Total: -25.44 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.19 Total: -5.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.46 -8.12 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260871709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.202 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds