Wall clock time and date at job start Mon Mar 30 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99523 * 2 1 4 4 C 1.38745 * 120.05769 * 0.04591 * 3 2 1 5 5 C 1.38122 * 119.94745 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11401 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05492 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.02848 * 180.02562 * 8 7 6 10 10 H 1.08997 * 115.55297 * 154.27654 * 9 8 7 11 11 C 1.52998 * 117.49653 * 8.60615 * 9 8 7 12 12 C 1.53005 * 60.00177 * 252.51117 * 11 9 8 13 13 H 1.09000 * 117.50021 * 252.50854 * 12 11 9 14 14 C 1.53004 * 117.49760 * 107.49059 * 12 11 9 15 15 H 1.08999 * 109.46705 * 351.38009 * 14 12 11 16 16 C 1.53003 * 109.47028 * 111.37963 * 14 12 11 17 17 C 1.50700 * 109.46839 * 231.38207 * 14 12 11 18 18 H 1.07997 * 119.99860 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99623 * 180.02562 * 17 14 12 20 20 N 1.31515 * 119.99910 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 120.00158 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.46944 * 90.00158 * 21 19 17 23 23 H 1.48500 * 109.46985 * 210.00149 * 21 19 17 24 24 H 1.48499 * 109.46693 * 329.99966 * 21 19 17 25 25 H 1.08995 * 109.47018 * 299.99822 * 1 2 3 26 26 H 1.08995 * 109.47252 * 60.00318 * 1 2 3 27 27 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.02960 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.29661 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97188 * 180.02562 * 7 6 5 32 32 H 1.09001 * 117.50240 * 359.97438 * 11 9 8 33 33 H 1.09000 * 117.50244 * 145.00169 * 11 9 8 34 34 H 1.08995 * 109.47024 * 60.00048 * 16 14 12 35 35 H 1.08995 * 109.46758 * 179.97438 * 16 14 12 36 36 H 1.09000 * 109.46749 * 299.99636 * 16 14 12 37 37 H 0.96996 * 120.00412 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0010 5 6 1.9207 3.6048 0.0015 6 6 3.3018 3.6759 0.0005 7 6 4.0559 2.5172 -0.0004 8 6 3.4311 1.2849 -0.0010 9 6 4.2537 0.0223 -0.0014 10 1 3.7681 -0.8554 0.4250 11 6 5.7636 0.1629 0.2018 12 6 5.2077 -0.1989 -1.1770 13 1 5.3498 -1.2222 -1.5243 14 6 5.2535 0.8789 -2.2621 15 1 5.5570 1.8275 -1.8193 16 6 6.2603 0.4741 -3.3408 17 6 3.8872 1.0274 -2.8805 18 1 3.0684 0.4141 -2.5344 19 6 3.6830 1.9454 -3.8887 20 7 2.4908 2.0748 -4.4287 21 14 5.0997 3.0056 -4.4876 22 1 5.8008 2.3133 -5.5986 23 1 4.5738 4.3082 -4.9695 24 1 6.0504 3.2382 -3.3708 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2127 2.3203 0.0013 29 1 1.3338 4.5114 0.0071 30 1 3.7920 4.6382 0.0005 31 1 5.1343 2.5754 -0.0008 32 1 6.1620 1.1686 0.3354 33 1 6.2714 -0.6224 0.7619 34 1 5.9568 -0.4745 -3.7834 35 1 6.2926 1.2417 -4.1139 36 1 7.2485 0.3668 -2.8934 37 1 2.3472 2.7203 -5.1382 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260871711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:12 Heat of formation + Delta-G solvation = 17.015514 kcal Electronic energy + Delta-G solvation = -18609.387067 eV Core-core repulsion = 15932.152295 eV Total energy + Delta-G solvation = -2677.234772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.73007 -37.68950 -36.12277 -33.12628 -30.90399 -29.75843 -29.39751 -26.71445 -24.89645 -23.28223 -22.37753 -21.45062 -19.91707 -18.81449 -17.20900 -16.42513 -15.72862 -15.13388 -15.06604 -14.44638 -14.33250 -13.82327 -13.38885 -12.97662 -12.63136 -12.22198 -12.13072 -12.06377 -11.50422 -11.47910 -11.11297 -10.86824 -10.58076 -10.47180 -10.30381 -10.23271 -9.74398 -9.61961 -9.50974 -9.06655 -8.65520 -8.39204 -7.88731 -7.21642 -5.90039 -3.83994 2.12520 2.24726 3.34894 3.45339 3.47089 3.91094 4.39487 4.54382 4.82620 5.31391 5.39061 5.42388 5.51914 5.60389 5.67618 5.70447 5.76974 5.86736 5.89336 6.09063 6.13368 6.24478 6.35044 6.38652 6.44870 6.57882 6.71884 6.77617 6.89205 7.02188 7.08983 7.15758 7.21103 7.34613 7.53506 7.64145 7.92457 8.11231 8.72414 9.19400 9.73942 11.23671 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.010988 C = 0.009460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.640549 B = 2547.594460 C = 2959.027922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.313 6.313 3 C 0.139 3.861 4 C -0.201 4.201 5 C -0.094 4.094 6 C -0.154 4.154 7 C -0.072 4.072 8 C -0.031 4.031 9 C -0.101 4.101 10 H 0.101 0.899 11 C -0.196 4.196 12 C -0.099 4.099 13 H 0.092 0.908 14 C 0.032 3.968 15 H 0.029 0.971 16 C -0.145 4.145 17 C -0.485 4.485 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.903 5.903 21 Si 0.879 3.121 22 H -0.284 1.284 23 H -0.302 1.302 24 H -0.268 1.268 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.027 0.973 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 -0.850 10.084 10.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.227 6.227 3 C 0.094 3.906 4 C -0.220 4.220 5 C -0.112 4.112 6 C -0.172 4.172 7 C -0.090 4.090 8 C -0.032 4.032 9 C -0.119 4.119 10 H 0.120 0.880 11 C -0.233 4.233 12 C -0.117 4.117 13 H 0.110 0.890 14 C 0.014 3.986 15 H 0.047 0.953 16 C -0.202 4.202 17 C -0.523 4.523 18 H 0.095 0.905 19 C -0.129 4.129 20 N -0.542 5.542 21 Si 0.711 3.289 22 H -0.211 1.211 23 H -0.230 1.230 24 H -0.194 1.194 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.199 -0.952 9.953 10.000 hybrid contribution 0.355 0.835 -0.762 1.185 sum 0.554 -0.118 9.190 9.208 Atomic orbital electron populations 1.22921 0.79632 1.02986 1.00887 1.86036 1.20307 1.27391 1.88949 1.18560 0.91532 0.83661 0.96868 1.20941 0.99058 0.92588 1.09389 1.20630 0.94542 0.96374 0.99635 1.20789 0.93898 0.97746 1.04787 1.20643 0.99246 0.91239 0.97829 1.18091 0.89488 0.93809 1.01780 1.20731 0.89734 0.96521 1.04877 0.88045 1.23222 0.95837 1.02002 1.02201 1.22417 0.99994 1.00300 0.88973 0.88974 1.18869 0.96026 0.92652 0.91098 0.95310 1.22138 0.97743 1.00742 0.99615 1.20928 0.93651 1.20395 1.17305 0.90526 1.24908 0.94920 0.96684 0.96378 1.69889 1.21409 1.36244 1.26676 0.86986 0.83207 0.79474 0.79248 1.21113 1.22990 1.19353 0.93594 0.92611 0.89081 0.86575 0.87069 0.87111 0.86262 0.89179 0.89776 0.93114 0.94527 0.95389 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.31 -6.12 9.68 -19.44 -0.19 -6.30 16 3 C 0.14 2.87 6.48 -39.22 -0.25 2.62 16 4 C -0.20 -3.87 9.04 -39.44 -0.36 -4.22 16 5 C -0.09 -1.74 10.04 -39.60 -0.40 -2.14 16 6 C -0.15 -2.92 10.04 -39.56 -0.40 -3.32 16 7 C -0.07 -1.43 7.58 -39.60 -0.30 -1.73 16 8 C -0.03 -0.65 3.57 -104.47 -0.37 -1.02 16 9 C -0.10 -1.96 5.57 -91.77 -0.51 -2.47 16 10 H 0.10 1.90 7.77 -51.93 -0.40 1.50 16 11 C -0.20 -3.33 9.51 -26.73 -0.25 -3.59 16 12 C -0.10 -2.00 5.10 -90.61 -0.46 -2.46 16 13 H 0.09 1.79 8.11 -51.93 -0.42 1.36 16 14 C 0.03 0.75 1.31 -91.77 -0.12 0.63 16 15 H 0.03 0.69 4.97 -51.93 -0.26 0.44 16 16 C -0.15 -3.21 8.66 37.16 0.32 -2.88 16 17 C -0.48 -13.40 7.33 -34.44 -0.25 -13.65 16 18 H 0.08 2.36 7.41 -52.49 -0.39 1.97 16 19 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 20 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 21 Si 0.88 22.56 24.37 -169.99 -4.14 18.42 16 22 H -0.28 -7.16 6.87 56.52 0.39 -6.77 16 23 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 24 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 25 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 26 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.12 1.94 6.30 -52.49 -0.33 1.61 16 29 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 31 H 0.12 2.23 5.17 -52.49 -0.27 1.96 16 32 H 0.09 1.49 6.08 -51.93 -0.32 1.18 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -31.52 289.42 -6.73 -38.26 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.07 Total: 3.14 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -2.46 Total: -30.81 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.77 Total: -27.06 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.19 Total: -6.30 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.14 Total: 18.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.52 -6.73 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260871711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.271 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds