Wall clock time and date at job start Mon Mar 30 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99523 * 2 1 4 4 C 1.38745 * 120.05769 * 0.04591 * 3 2 1 5 5 C 1.38122 * 119.94745 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11401 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05492 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.02848 * 180.02562 * 8 7 6 10 10 H 1.08997 * 115.55297 * 154.27654 * 9 8 7 11 11 C 1.52998 * 117.49653 * 8.60615 * 9 8 7 12 12 C 1.53005 * 60.00177 * 252.51117 * 11 9 8 13 13 H 1.09000 * 117.50021 * 252.50854 * 12 11 9 14 14 C 1.53004 * 117.49760 * 107.49059 * 12 11 9 15 15 H 1.08999 * 109.46705 * 351.38009 * 14 12 11 16 16 C 1.53003 * 109.47028 * 111.37963 * 14 12 11 17 17 C 1.50700 * 109.46839 * 231.38207 * 14 12 11 18 18 H 1.07997 * 119.99860 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99623 * 180.02562 * 17 14 12 20 20 N 1.31515 * 119.99910 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 120.00158 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.46944 * 90.00158 * 21 19 17 23 23 H 1.48500 * 109.46985 * 210.00149 * 21 19 17 24 24 H 1.48499 * 109.46693 * 329.99966 * 21 19 17 25 25 H 1.08995 * 109.47018 * 299.99822 * 1 2 3 26 26 H 1.08995 * 109.47252 * 60.00318 * 1 2 3 27 27 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.02960 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.97891 * 180.29661 * 5 4 3 30 30 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 31 31 H 1.07998 * 119.97188 * 180.02562 * 7 6 5 32 32 H 1.09001 * 117.50240 * 359.97438 * 11 9 8 33 33 H 1.09000 * 117.50244 * 145.00169 * 11 9 8 34 34 H 1.08995 * 109.47024 * 60.00048 * 16 14 12 35 35 H 1.08995 * 109.46758 * 179.97438 * 16 14 12 36 36 H 1.09000 * 109.46749 * 299.99636 * 16 14 12 37 37 H 0.96996 * 120.00412 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0010 5 6 1.9207 3.6048 0.0015 6 6 3.3018 3.6759 0.0005 7 6 4.0559 2.5172 -0.0004 8 6 3.4311 1.2849 -0.0010 9 6 4.2537 0.0223 -0.0014 10 1 3.7681 -0.8554 0.4250 11 6 5.7636 0.1629 0.2018 12 6 5.2077 -0.1989 -1.1770 13 1 5.3498 -1.2222 -1.5243 14 6 5.2535 0.8789 -2.2621 15 1 5.5570 1.8275 -1.8193 16 6 6.2603 0.4741 -3.3408 17 6 3.8872 1.0274 -2.8805 18 1 3.0684 0.4141 -2.5344 19 6 3.6830 1.9454 -3.8887 20 7 2.4908 2.0748 -4.4287 21 14 5.0997 3.0056 -4.4876 22 1 5.8008 2.3133 -5.5986 23 1 4.5738 4.3082 -4.9695 24 1 6.0504 3.2382 -3.3708 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2127 2.3203 0.0013 29 1 1.3338 4.5114 0.0071 30 1 3.7920 4.6382 0.0005 31 1 5.1343 2.5754 -0.0008 32 1 6.1620 1.1686 0.3354 33 1 6.2714 -0.6224 0.7619 34 1 5.9568 -0.4745 -3.7834 35 1 6.2926 1.2417 -4.1139 36 1 7.2485 0.3668 -2.8934 37 1 2.3472 2.7203 -5.1382 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260871711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:12 Heat of formation + Delta-G solvation = -1.513172 kcal Electronic energy + Delta-G solvation = -18610.190531 eV Core-core repulsion = 15932.152295 eV Total energy + Delta-G solvation = -2678.038236 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19152 -39.19098 -37.60275 -35.08515 -32.83855 -31.27229 -30.84319 -28.00405 -26.91920 -24.78008 -24.06641 -22.93352 -21.40182 -20.44544 -18.76774 -18.45999 -17.20277 -16.75826 -16.50405 -16.18994 -15.83663 -15.27777 -15.02179 -14.70068 -14.27440 -14.00020 -13.90055 -13.57522 -12.99242 -12.84287 -12.76637 -12.67685 -12.15867 -12.03831 -11.85444 -11.78180 -11.50324 -11.39469 -11.11536 -10.93182 -10.57889 -10.41320 -9.38902 -8.71138 -8.11726 -6.07660 0.63359 0.75145 1.32326 1.37496 1.46422 2.42115 2.56749 2.92052 3.25228 3.34334 3.86516 4.03666 4.15474 4.26011 4.33567 4.36926 4.41342 4.43037 4.60528 4.62529 4.68651 4.72583 4.76792 4.88571 4.95930 5.02593 5.12991 5.28519 5.33404 5.37081 5.44911 5.61337 5.71801 5.82816 5.83962 5.88279 6.09798 6.53888 6.67864 6.96319 7.52617 9.05450 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.010988 C = 0.009460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.640549 B = 2547.594460 C = 2959.027922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.216 4.216 5 C -0.103 4.103 6 C -0.166 4.166 7 C -0.086 4.086 8 C -0.054 4.054 9 C -0.114 4.114 10 H 0.101 0.899 11 C -0.157 4.157 12 C -0.122 4.122 13 H 0.097 0.903 14 C 0.033 3.967 15 H 0.029 0.971 16 C -0.145 4.145 17 C -0.465 4.465 18 H 0.032 0.968 19 C 0.015 3.985 20 N -0.952 5.952 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.310 1.310 24 H -0.246 1.246 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 -0.545 11.242 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.234 4.234 5 C -0.121 4.121 6 C -0.184 4.184 7 C -0.104 4.104 8 C -0.055 4.055 9 C -0.133 4.133 10 H 0.119 0.881 11 C -0.194 4.194 12 C -0.140 4.140 13 H 0.115 0.885 14 C 0.014 3.986 15 H 0.047 0.953 16 C -0.202 4.202 17 C -0.503 4.503 18 H 0.050 0.950 19 C -0.181 4.181 20 N -0.595 5.595 21 Si 0.763 3.237 22 H -0.204 1.204 23 H -0.239 1.239 24 H -0.170 1.170 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.136 0.864 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.105 -0.662 11.132 11.349 hybrid contribution -0.346 0.665 -1.064 1.302 sum 1.759 0.003 10.068 10.220 Atomic orbital electron populations 1.23184 0.77561 1.04955 1.01276 1.85989 1.22578 1.27352 1.88990 1.18912 0.92215 0.84430 0.97455 1.21293 1.00193 0.92698 1.09259 1.21047 0.95025 0.97198 0.98850 1.21185 0.94288 0.98673 1.04247 1.20896 0.99999 0.91376 0.98114 1.18415 0.89993 0.94719 1.02356 1.20778 0.91308 0.96268 1.04905 0.88098 1.23298 0.93778 1.03405 0.98912 1.22316 1.02567 0.99630 0.89503 0.88465 1.18793 0.93646 0.93880 0.92265 0.95314 1.22085 0.99229 1.00065 0.98828 1.21060 0.94692 1.18395 1.16181 0.94979 1.25617 0.97005 0.98390 0.97043 1.70052 1.23748 1.37711 1.27967 0.86093 0.80747 0.77357 0.79531 1.20409 1.23886 1.16969 0.91194 0.94092 0.86438 0.84859 0.84389 0.84656 0.85142 0.88374 0.86496 0.93369 0.95803 0.91756 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.81 113.37 1.11 1.85 16 2 O -0.34 -13.34 9.68 -92.49 -0.90 -14.23 16 3 C 0.11 4.82 6.48 22.50 0.15 4.96 16 4 C -0.22 -8.32 9.04 22.36 0.20 -8.12 16 5 C -0.10 -3.75 10.04 22.26 0.22 -3.53 16 6 C -0.17 -6.08 10.04 22.28 0.22 -5.86 16 7 C -0.09 -3.34 7.58 22.25 0.17 -3.18 16 8 C -0.05 -2.24 3.57 -19.77 -0.07 -2.31 16 9 C -0.11 -4.34 5.57 -11.54 -0.06 -4.41 16 10 H 0.10 3.75 7.77 -2.39 -0.02 3.73 16 11 C -0.16 -4.83 9.51 30.60 0.29 -4.54 16 12 C -0.12 -4.72 5.10 -10.79 -0.06 -4.77 16 13 H 0.10 3.61 8.11 -2.39 -0.02 3.59 16 14 C 0.03 1.48 1.31 -11.54 -0.02 1.46 16 15 H 0.03 1.31 4.97 -2.39 -0.01 1.30 16 16 C -0.14 -6.01 8.66 71.98 0.62 -5.39 16 17 C -0.46 -25.94 7.33 25.60 0.19 -25.75 16 18 H 0.03 2.05 7.41 -2.91 -0.02 2.03 16 19 C 0.01 0.85 5.45 84.65 0.46 1.32 16 20 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 21 Si 0.93 46.06 24.37 68.60 1.67 47.73 16 22 H -0.28 -13.27 6.87 99.48 0.68 -12.59 16 23 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 24 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 25 H 0.07 1.69 7.66 -2.39 -0.02 1.68 16 26 H 0.04 1.31 7.66 -2.39 -0.02 1.29 16 27 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.13 4.45 6.30 -2.91 -0.02 4.43 16 29 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 31 H 0.13 4.61 5.17 -2.91 -0.02 4.59 16 32 H 0.10 2.88 6.08 -2.39 -0.01 2.86 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.02 1.04 3.27 -2.39 -0.01 1.03 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -69.11 289.42 5.49 -63.62 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.98 Total: 21.19 kcal Atomic # 6 Polarization: -61.70 SS G_CDS: 3.43 Total: -58.27 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.30 Total: -60.05 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.90 Total: -14.23 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.73 kcal Total: -69.11 5.49 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260871711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.109 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds