Wall clock time and date at job start Mon Mar 30 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00371 * 2 1 4 4 C 1.38763 * 120.17498 * 359.97438 * 3 2 1 5 5 C 1.37831 * 119.71525 * 180.09615 * 4 3 2 6 6 C 1.38963 * 120.62390 * 359.94058 * 5 4 3 7 7 C 1.37709 * 119.76813 * 359.83281 * 6 5 4 8 8 C 1.38431 * 120.17730 * 179.97438 * 3 2 1 9 9 C 1.50641 * 122.56146 * 180.68616 * 7 6 5 10 10 H 1.09005 * 109.25309 * 102.48886 * 9 7 6 11 11 C 1.52997 * 109.25080 * 221.91549 * 9 7 6 12 12 C 1.52726 * 110.59279 * 342.20488 * 9 7 6 13 13 C 1.53326 * 108.37658 * 51.12147 * 12 9 7 14 14 C 1.50655 * 117.69420 * 179.78261 * 6 5 4 15 15 H 1.09001 * 109.24773 * 42.01052 * 14 6 5 16 16 C 1.50697 * 109.25002 * 282.54736 * 14 6 5 17 17 H 1.07995 * 120.00530 * 324.97086 * 16 14 6 18 18 C 1.37880 * 119.99846 * 144.96480 * 16 14 6 19 19 N 1.31512 * 120.00094 * 354.93519 * 18 16 14 20 20 Si 1.86805 * 119.99952 * 174.92959 * 18 16 14 21 21 H 1.48503 * 109.47214 * 270.00209 * 20 18 16 22 22 H 1.48496 * 109.46937 * 30.00380 * 20 18 16 23 23 H 1.48497 * 109.46833 * 150.00657 * 20 18 16 24 24 H 1.08995 * 109.47515 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46802 * 300.00412 * 1 2 3 26 26 H 1.09002 * 109.46836 * 59.99677 * 1 2 3 27 27 H 1.07997 * 120.14257 * 0.08128 * 4 3 2 28 28 H 1.07998 * 119.68841 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.74368 * 0.04393 * 8 3 2 30 30 H 1.08998 * 109.47021 * 60.00261 * 11 9 7 31 31 H 1.09005 * 109.46875 * 179.97438 * 11 9 7 32 32 H 1.08998 * 109.47502 * 299.99800 * 11 9 7 33 33 H 1.08999 * 109.68433 * 170.83735 * 12 9 7 34 34 H 1.09001 * 109.68571 * 291.35626 * 12 9 7 35 35 H 1.09003 * 109.68004 * 170.38662 * 13 12 9 36 36 H 1.09001 * 109.68421 * 49.83823 * 13 12 9 37 37 H 0.97006 * 120.00230 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2939 2.3769 -0.0005 5 6 1.9296 3.5999 -0.0025 6 6 3.3171 3.6765 -0.0028 7 6 4.0656 2.5207 0.0025 8 6 3.4282 1.2874 0.0005 9 6 5.5719 2.5303 0.0177 10 1 5.9226 2.3081 1.0256 11 6 6.0930 1.4607 -0.9441 12 6 6.1047 3.8959 -0.4111 13 6 5.4044 4.9727 0.4261 14 6 3.9426 5.0470 -0.0101 15 1 3.3962 5.6951 0.6751 16 6 3.8679 5.6199 -1.4019 17 1 3.9678 4.9707 -2.2592 18 6 3.6720 6.9729 -1.5809 19 7 3.4509 7.7484 -0.5421 20 14 3.7207 7.7044 -3.2991 21 1 5.1105 8.1150 -3.6231 22 1 3.2623 6.6901 -4.2821 23 1 2.8280 8.8897 -3.3579 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2151 2.3264 0.0004 28 1 1.3438 4.5072 -0.0034 29 1 4.0151 0.3808 0.0002 30 1 5.7366 1.6736 -1.9519 31 1 7.1830 1.4649 -0.9362 32 1 5.7309 0.4819 -0.6298 33 1 7.1804 3.9404 -0.2406 34 1 5.8937 4.0569 -1.4683 35 1 5.8860 5.9366 0.2616 36 1 5.4593 4.7099 1.4825 37 1 3.3133 8.7004 -0.6680 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:05 Heat of formation + Delta-G solvation = -36.652532 kcal Electronic energy + Delta-G solvation = -18103.602741 eV Core-core repulsion = 15424.040748 eV Total energy + Delta-G solvation = -2679.561993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86154 -38.15520 -34.86682 -33.76278 -31.45720 -29.30906 -28.90574 -26.97047 -26.14961 -23.86558 -22.38685 -21.58844 -20.30530 -18.65876 -17.20087 -16.10652 -15.71801 -15.38872 -15.03019 -14.61784 -14.01673 -13.56405 -13.16296 -13.08153 -12.60173 -12.32520 -12.06748 -11.98210 -11.91904 -11.38758 -11.24216 -11.06700 -10.89451 -10.76236 -10.50742 -10.34593 -10.22018 -9.83191 -9.40946 -8.98795 -8.96567 -8.45540 -8.07772 -7.24223 -6.03279 -4.06277 2.03242 2.24761 3.29127 3.36165 3.40001 3.66466 4.37626 4.55478 5.19341 5.24477 5.31124 5.33427 5.45029 5.52241 5.62172 5.63947 5.70454 6.01137 6.07364 6.12822 6.16265 6.25850 6.39407 6.51589 6.57683 6.67873 6.71778 6.79861 6.99177 7.07500 7.19321 7.27337 7.40312 7.55397 7.66867 7.88460 7.91300 8.02912 8.39161 9.01495 9.56131 11.04054 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.007881 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.234465 B = 3552.030923 C = 4284.139182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.327 6.327 3 C 0.091 3.909 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.054 4.054 7 C -0.052 4.052 8 C -0.156 4.156 9 C -0.046 4.046 10 H 0.070 0.930 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.102 4.102 14 C 0.065 3.935 15 H 0.068 0.932 16 C -0.497 4.497 17 H 0.054 0.946 18 C 0.064 3.936 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.287 1.287 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 -11.033 1.637 11.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.242 6.242 3 C 0.047 3.953 4 C -0.230 4.230 5 C -0.094 4.094 6 C -0.054 4.054 7 C -0.053 4.053 8 C -0.175 4.175 9 C -0.064 4.064 10 H 0.088 0.912 11 C -0.200 4.200 12 C -0.144 4.144 13 C -0.140 4.140 14 C 0.046 3.954 15 H 0.086 0.914 16 C -0.535 4.535 17 H 0.073 0.927 18 C -0.137 4.137 19 N -0.532 5.532 20 Si 0.717 3.283 21 H -0.206 1.206 22 H -0.199 1.199 23 H -0.213 1.213 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.138 -11.026 1.679 11.211 hybrid contribution -0.420 0.612 -1.005 1.250 sum -1.557 -10.414 0.674 10.551 Atomic orbital electron populations 1.22897 0.79492 1.02845 1.01102 1.85974 1.20494 1.27798 1.89905 1.18736 0.92257 0.83539 1.00761 1.21073 0.99039 0.92739 1.10143 1.21034 0.94819 0.96375 0.97181 1.20372 0.92931 0.96638 0.95501 1.19392 0.94976 0.91462 0.99432 1.20301 0.90929 0.97959 1.08311 1.19961 0.91013 0.96541 0.98906 0.91174 1.21899 1.00086 0.98111 0.99897 1.21548 0.97587 0.93306 1.01976 1.21605 0.99086 0.97565 0.95731 1.17945 0.91531 0.87697 0.98202 0.91355 1.20956 1.49105 0.92110 0.91307 0.92737 1.24958 0.94752 0.97390 0.96609 1.69913 1.48788 1.05137 1.29350 0.86641 0.77990 0.78755 0.84953 1.20577 1.19898 1.21301 0.89093 0.93138 0.93085 0.86691 0.85974 0.86363 0.92538 0.92992 0.92964 0.93642 0.90807 0.92193 0.95290 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.82 101.05 0.99 1.37 16 2 O -0.33 -5.31 10.50 -19.41 -0.20 -5.52 16 3 C 0.09 1.65 6.68 -39.32 -0.26 1.39 16 4 C -0.21 -3.87 9.04 -39.54 -0.36 -4.23 16 5 C -0.08 -1.59 9.51 -39.46 -0.38 -1.97 16 6 C -0.05 -1.19 5.00 -104.57 -0.52 -1.72 16 7 C -0.05 -1.04 5.43 -104.63 -0.57 -1.60 16 8 C -0.16 -2.88 8.99 -39.29 -0.35 -3.24 16 9 C -0.05 -0.81 2.77 -91.94 -0.25 -1.06 16 10 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 11 C -0.14 -2.13 8.69 37.16 0.32 -1.81 16 12 C -0.11 -2.05 5.20 -26.70 -0.14 -2.19 16 13 C -0.10 -2.23 5.41 -26.70 -0.14 -2.38 16 14 C 0.06 1.57 2.29 -93.09 -0.21 1.36 16 15 H 0.07 1.85 7.22 -51.93 -0.37 1.47 16 16 C -0.50 -13.17 7.21 -34.44 -0.25 -13.42 16 17 H 0.05 1.48 7.64 -52.49 -0.40 1.08 16 18 C 0.06 1.74 5.45 -17.82 -0.10 1.65 16 19 N -0.89 -25.18 12.77 55.43 0.71 -24.47 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 26 H 0.05 0.57 7.67 -51.93 -0.40 0.18 16 27 H 0.12 1.79 6.33 -52.49 -0.33 1.46 16 28 H 0.12 2.60 8.05 -52.49 -0.42 2.17 16 29 H 0.12 1.96 6.33 -52.49 -0.33 1.62 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.55 7.06 -51.93 -0.37 1.18 16 35 H 0.06 1.41 8.11 -51.93 -0.42 0.99 16 36 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -28.48 295.21 -7.74 -36.22 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.45 Total: 1.12 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -2.22 Total: -27.84 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.71 Total: -24.47 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.20 Total: -5.52 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.48 -7.74 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.435 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds