Wall clock time and date at job start Mon Mar 30 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 116.99745 * 2 1 4 4 C 1.38474 * 119.78770 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.70784 * 179.97438 * 4 3 2 6 6 C 1.37999 * 119.83700 * 0.10281 * 5 4 3 7 7 C 1.38915 * 120.66235 * 359.97438 * 6 5 4 8 8 C 1.37616 * 119.71254 * 359.81895 * 7 6 5 9 9 C 1.50628 * 122.59226 * 180.40345 * 8 7 6 10 10 H 1.09001 * 109.25557 * 222.09256 * 9 8 7 11 11 C 1.52994 * 109.25568 * 102.65631 * 9 8 7 12 12 C 1.52741 * 110.57736 * 342.36990 * 9 8 7 13 13 C 1.53329 * 108.36260 * 51.09387 * 12 9 8 14 14 C 1.50645 * 117.73136 * 179.77432 * 7 6 5 15 15 H 1.08998 * 109.24559 * 282.77571 * 14 7 6 16 16 C 1.50694 * 109.21864 * 42.21596 * 14 7 6 17 17 H 1.07998 * 120.00425 * 36.16257 * 16 14 7 18 18 C 1.37873 * 120.00130 * 216.15274 * 16 14 7 19 19 N 1.31519 * 120.00056 * 5.76055 * 18 16 14 20 20 Si 1.86804 * 120.00489 * 185.75393 * 18 16 14 21 21 H 1.48493 * 109.47180 * 90.00076 * 20 18 16 22 22 H 1.48495 * 109.47525 * 210.00643 * 20 18 16 23 23 H 1.48502 * 109.46732 * 330.00250 * 20 18 16 24 24 H 1.09002 * 109.47273 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47159 * 300.00046 * 1 2 3 26 26 H 1.09000 * 109.47204 * 60.00428 * 1 2 3 27 27 H 1.08000 * 120.14986 * 359.96967 * 4 3 2 28 28 H 1.08005 * 120.08240 * 180.11932 * 5 4 3 29 29 H 1.07994 * 119.66983 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.47108 * 298.90251 * 11 9 8 31 31 H 1.09000 * 109.47512 * 58.90989 * 11 9 8 32 32 H 1.09002 * 109.47261 * 178.91167 * 11 9 8 33 33 H 1.08995 * 109.68799 * 291.37811 * 12 9 8 34 34 H 1.09000 * 109.68267 * 170.80862 * 12 9 8 35 35 H 1.09003 * 109.68582 * 49.83203 * 13 12 9 36 36 H 1.09004 * 109.68243 * 170.34069 * 13 12 9 37 37 H 0.96996 * 120.00298 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2874 2.3694 0.0005 5 6 1.9162 3.5993 0.0011 6 6 3.2945 3.6658 -0.0011 7 6 4.0597 2.5064 -0.0033 8 6 3.4378 1.2787 0.0005 9 6 4.2033 -0.0185 0.0074 10 1 3.7297 -0.7190 -0.6805 11 6 4.1843 -0.6081 1.4191 12 6 5.6507 0.2099 -0.4237 13 6 6.2306 1.3529 0.4178 14 6 5.5587 2.6557 -0.0108 15 1 5.8887 2.9164 -1.0164 16 6 5.9525 3.7549 0.9419 17 1 5.4054 3.8931 1.8628 18 6 7.0112 4.5841 0.6381 19 7 7.6054 4.4903 -0.5315 20 14 7.6019 5.8409 1.8876 21 1 8.6484 5.2309 2.7465 22 1 8.1671 7.0166 1.1780 23 1 6.4595 6.2744 2.7315 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2089 2.3117 0.0005 28 1 1.3305 4.5068 0.0034 29 1 3.7833 4.6288 -0.0011 30 1 4.6658 0.0851 2.1088 31 1 3.1527 -0.7726 1.7303 32 1 4.7209 -1.5569 1.4239 33 1 5.6813 0.4791 -1.4794 34 1 6.2305 -0.6982 -0.2588 35 1 6.0333 1.1682 1.4738 36 1 7.3058 1.4219 0.2520 37 1 8.3500 5.0739 -0.7454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260914433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:10 Heat of formation + Delta-G solvation = -35.936050 kcal Electronic energy + Delta-G solvation = -18327.305318 eV Core-core repulsion = 15647.774394 eV Total energy + Delta-G solvation = -2679.530924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00692 -37.75768 -35.42107 -33.47537 -31.03174 -29.68234 -28.48816 -26.88338 -26.49707 -23.95579 -22.03421 -21.82113 -20.48794 -17.94695 -17.16011 -16.31503 -15.76452 -15.39302 -14.89206 -14.58289 -14.12863 -13.73237 -13.21291 -12.89143 -12.57424 -12.46676 -12.13891 -11.76303 -11.54493 -11.37094 -11.20968 -10.97445 -10.93783 -10.64991 -10.60358 -10.38791 -9.99980 -9.92110 -9.51183 -9.00823 -8.95304 -8.50897 -7.72675 -7.40066 -6.04920 -4.07133 2.11871 2.22649 3.29501 3.36714 3.39966 3.68988 4.39705 4.56521 5.18753 5.25043 5.29315 5.30635 5.42727 5.56422 5.63250 5.74209 5.80831 6.06432 6.15062 6.21278 6.23806 6.36475 6.45559 6.51375 6.58704 6.67891 6.82706 6.86257 7.02912 7.07204 7.19122 7.28993 7.41409 7.63404 7.73591 7.86287 7.91303 8.02804 8.39868 9.01280 9.55290 11.03661 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.007661 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.992695 B = 3653.883304 C = 4270.538634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.113 3.887 4 C -0.235 4.235 5 C -0.101 4.101 6 C -0.134 4.134 7 C 0.004 3.996 8 C -0.118 4.118 9 C -0.033 4.033 10 H 0.066 0.934 11 C -0.138 4.138 12 C -0.119 4.119 13 C -0.102 4.102 14 C 0.062 3.938 15 H 0.077 0.923 16 C -0.505 4.505 17 H 0.056 0.944 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.225 -7.074 0.518 12.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.069 3.931 4 C -0.254 4.254 5 C -0.119 4.119 6 C -0.152 4.152 7 C 0.003 3.997 8 C -0.119 4.119 9 C -0.052 4.052 10 H 0.084 0.916 11 C -0.195 4.195 12 C -0.157 4.157 13 C -0.140 4.140 14 C 0.044 3.956 15 H 0.095 0.905 16 C -0.543 4.543 17 H 0.074 0.926 18 C -0.137 4.137 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.148 0.852 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.994 -7.179 0.411 12.312 hybrid contribution -0.052 0.976 0.664 1.182 sum -10.047 -6.203 1.075 11.856 Atomic orbital electron populations 1.22902 0.79862 1.02834 1.00866 1.86033 1.20077 1.27782 1.89354 1.18982 0.91892 0.83439 0.98831 1.20856 0.98687 0.92776 1.13036 1.20807 0.95069 0.96172 0.99827 1.21317 0.92390 0.99803 1.01671 1.20422 0.98804 0.89999 0.90455 1.19026 0.89323 0.95583 1.07933 1.19700 0.95237 0.93194 0.97034 0.91589 1.21819 1.01067 0.99793 0.96829 1.21716 0.94545 0.99102 1.00304 1.21699 0.99702 0.94495 0.98135 1.18011 0.84552 0.93152 0.99884 0.90495 1.21016 1.14554 1.13869 1.04872 0.92553 1.24968 0.96678 0.96969 0.95039 1.69905 1.23221 1.39526 1.20368 0.86626 0.79158 0.80911 0.81549 1.20596 1.21284 1.19836 0.89103 0.93255 0.93258 0.86895 0.87067 0.85205 0.92234 0.93111 0.93387 0.92490 0.93119 0.93119 0.92591 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.17 8.89 -19.44 -0.17 -5.34 16 3 C 0.11 2.08 6.53 -39.08 -0.25 1.83 16 4 C -0.23 -4.05 9.02 -39.53 -0.36 -4.41 16 5 C -0.10 -1.84 10.04 -39.71 -0.40 -2.23 16 6 C -0.13 -2.86 9.04 -39.42 -0.36 -3.22 16 7 C 0.00 0.08 5.42 -104.62 -0.57 -0.49 16 8 C -0.12 -2.39 5.03 -104.47 -0.53 -2.92 16 9 C -0.03 -0.61 2.37 -91.94 -0.22 -0.83 16 10 H 0.07 1.16 7.76 -51.93 -0.40 0.76 16 11 C -0.14 -2.31 8.89 37.15 0.33 -1.98 16 12 C -0.12 -2.26 5.42 -26.69 -0.14 -2.40 16 13 C -0.10 -2.27 5.19 -26.70 -0.14 -2.41 16 14 C 0.06 1.52 2.34 -93.09 -0.22 1.31 16 15 H 0.08 2.11 7.20 -51.93 -0.37 1.74 16 16 C -0.51 -13.43 6.87 -34.44 -0.24 -13.66 16 17 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 18 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 19 N -0.89 -25.18 12.75 55.43 0.71 -24.48 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 26 H 0.05 0.52 7.65 -51.93 -0.40 0.13 16 27 H 0.11 1.61 6.27 -52.49 -0.33 1.28 16 28 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 29 H 0.13 2.92 7.26 -52.49 -0.38 2.54 16 30 H 0.06 1.07 6.43 -51.93 -0.33 0.73 16 31 H 0.05 0.83 7.45 -51.93 -0.39 0.44 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.05 1.11 6.23 -51.93 -0.32 0.79 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -28.36 292.64 -7.67 -36.03 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.40 Total: 1.85 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -2.19 Total: -28.40 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.71 Total: -24.48 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.17 Total: -5.34 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.36 -7.67 -36.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260914433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.092 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds