Wall clock time and date at job start Mon Mar 30 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 116.99745 * 2 1 4 4 C 1.38474 * 119.78770 * 0.02562 * 3 2 1 5 5 C 1.38131 * 119.70784 * 179.97438 * 4 3 2 6 6 C 1.37999 * 119.83700 * 0.10281 * 5 4 3 7 7 C 1.38915 * 120.66235 * 359.97438 * 6 5 4 8 8 C 1.37616 * 119.71254 * 359.81895 * 7 6 5 9 9 C 1.50628 * 122.59226 * 180.40345 * 8 7 6 10 10 H 1.09001 * 109.25557 * 222.09256 * 9 8 7 11 11 C 1.52994 * 109.25568 * 102.65631 * 9 8 7 12 12 C 1.52741 * 110.57736 * 342.36990 * 9 8 7 13 13 C 1.53329 * 108.36260 * 51.09387 * 12 9 8 14 14 C 1.50645 * 117.73136 * 179.77432 * 7 6 5 15 15 H 1.08998 * 109.24559 * 282.77571 * 14 7 6 16 16 C 1.50694 * 109.21864 * 42.21596 * 14 7 6 17 17 H 1.07998 * 120.00425 * 36.16257 * 16 14 7 18 18 C 1.37873 * 120.00130 * 216.15274 * 16 14 7 19 19 N 1.31519 * 120.00056 * 5.76055 * 18 16 14 20 20 Si 1.86804 * 120.00489 * 185.75393 * 18 16 14 21 21 H 1.48493 * 109.47180 * 90.00076 * 20 18 16 22 22 H 1.48495 * 109.47525 * 210.00643 * 20 18 16 23 23 H 1.48502 * 109.46732 * 330.00250 * 20 18 16 24 24 H 1.09002 * 109.47273 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47159 * 300.00046 * 1 2 3 26 26 H 1.09000 * 109.47204 * 60.00428 * 1 2 3 27 27 H 1.08000 * 120.14986 * 359.96967 * 4 3 2 28 28 H 1.08005 * 120.08240 * 180.11932 * 5 4 3 29 29 H 1.07994 * 119.66983 * 179.97438 * 6 5 4 30 30 H 1.09005 * 109.47108 * 298.90251 * 11 9 8 31 31 H 1.09000 * 109.47512 * 58.90989 * 11 9 8 32 32 H 1.09002 * 109.47261 * 178.91167 * 11 9 8 33 33 H 1.08995 * 109.68799 * 291.37811 * 12 9 8 34 34 H 1.09000 * 109.68267 * 170.80862 * 12 9 8 35 35 H 1.09003 * 109.68582 * 49.83203 * 13 12 9 36 36 H 1.09004 * 109.68243 * 170.34069 * 13 12 9 37 37 H 0.96996 * 120.00298 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2874 2.3694 0.0005 5 6 1.9162 3.5993 0.0011 6 6 3.2945 3.6658 -0.0011 7 6 4.0597 2.5064 -0.0033 8 6 3.4378 1.2787 0.0005 9 6 4.2033 -0.0185 0.0074 10 1 3.7297 -0.7190 -0.6805 11 6 4.1843 -0.6081 1.4191 12 6 5.6507 0.2099 -0.4237 13 6 6.2306 1.3529 0.4178 14 6 5.5587 2.6557 -0.0108 15 1 5.8887 2.9164 -1.0164 16 6 5.9525 3.7549 0.9419 17 1 5.4054 3.8931 1.8628 18 6 7.0112 4.5841 0.6381 19 7 7.6054 4.4903 -0.5315 20 14 7.6019 5.8409 1.8876 21 1 8.6484 5.2309 2.7465 22 1 8.1671 7.0166 1.1780 23 1 6.4595 6.2744 2.7315 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2089 2.3117 0.0005 28 1 1.3305 4.5068 0.0034 29 1 3.7833 4.6288 -0.0011 30 1 4.6658 0.0851 2.1088 31 1 3.1527 -0.7726 1.7303 32 1 4.7209 -1.5569 1.4239 33 1 5.6813 0.4791 -1.4794 34 1 6.2305 -0.6982 -0.2588 35 1 6.0333 1.1682 1.4738 36 1 7.3058 1.4219 0.2520 37 1 8.3500 5.0739 -0.7454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260914433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:10 Heat of formation + Delta-G solvation = -50.488500 kcal Electronic energy + Delta-G solvation = -18327.936359 eV Core-core repulsion = 15647.774394 eV Total energy + Delta-G solvation = -2680.161965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44671 -39.15660 -36.90878 -35.34619 -32.84851 -31.17369 -29.93370 -28.25147 -27.92612 -25.74546 -23.57671 -23.41061 -22.04882 -19.49727 -18.68749 -18.22924 -17.13629 -16.53988 -16.49404 -16.37083 -15.63198 -15.18187 -14.68286 -14.48469 -14.29237 -13.92259 -13.60865 -13.21170 -13.16524 -12.86763 -12.75332 -12.62713 -12.39222 -12.31757 -12.22047 -11.84510 -11.66079 -11.57310 -11.21790 -10.80675 -10.75486 -10.51991 -9.32554 -8.85950 -8.12290 -6.20650 0.61298 0.71126 1.40121 1.41344 1.51268 2.41831 2.52672 3.01466 3.17271 3.87912 3.98424 4.19680 4.22136 4.35413 4.46012 4.48137 4.54413 4.67331 4.70696 4.79257 4.79781 4.84955 4.90867 5.01054 5.12735 5.17191 5.23301 5.35233 5.40378 5.51109 5.56903 5.64447 5.69697 5.75958 5.89490 6.08804 6.17865 6.40122 6.65657 6.93264 7.43956 8.95878 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.007661 C = 0.006555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.992695 B = 3653.883304 C = 4270.538634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.117 3.883 4 C -0.225 4.225 5 C -0.094 4.094 6 C -0.162 4.162 7 C -0.026 4.026 8 C -0.133 4.133 9 C -0.031 4.031 10 H 0.080 0.920 11 C -0.131 4.131 12 C -0.111 4.111 13 C -0.095 4.095 14 C 0.063 3.937 15 H 0.035 0.965 16 C -0.510 4.510 17 H 0.047 0.953 18 C 0.016 3.984 19 N -0.927 5.927 20 Si 0.951 3.049 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.269 1.269 24 H 0.120 0.880 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.152 0.848 28 H 0.141 0.859 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.032 0.968 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.710 -8.441 1.301 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.072 3.928 4 C -0.244 4.244 5 C -0.112 4.112 6 C -0.181 4.181 7 C -0.026 4.026 8 C -0.133 4.133 9 C -0.049 4.049 10 H 0.098 0.902 11 C -0.188 4.188 12 C -0.149 4.149 13 C -0.133 4.133 14 C 0.045 3.955 15 H 0.053 0.947 16 C -0.548 4.548 17 H 0.065 0.935 18 C -0.182 4.182 19 N -0.566 5.566 20 Si 0.776 3.224 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.193 1.193 24 H 0.138 0.862 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.170 0.830 28 H 0.159 0.841 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.497 -8.557 1.202 15.193 hybrid contribution 0.554 1.333 0.395 1.496 sum -11.943 -7.224 1.596 14.049 Atomic orbital electron populations 1.23299 0.77052 1.05278 1.01930 1.86023 1.22861 1.26382 1.88823 1.18996 0.91401 0.84858 0.97529 1.21263 1.00609 0.91675 1.10804 1.21075 0.93687 0.98164 0.98229 1.21227 0.94160 0.98444 1.04220 1.20213 0.97404 0.91663 0.93360 1.19188 0.90902 0.95319 1.07939 1.19734 0.94104 0.92740 0.98370 0.90194 1.21749 1.01639 1.00271 0.95109 1.21638 0.95695 0.98637 0.98900 1.21524 0.98124 0.95028 0.98667 1.17833 0.86907 0.93662 0.97114 0.94721 1.21234 1.14293 1.14558 1.04763 0.93508 1.25691 0.96914 0.98968 0.96670 1.70036 1.23853 1.40696 1.22031 0.85665 0.78692 0.78670 0.79343 1.20027 1.20894 1.19323 0.86219 0.92121 0.92092 0.82999 0.84099 0.87837 0.94082 0.92454 0.90974 0.93535 0.90435 0.93170 0.94949 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.37 8.89 -92.46 -0.82 -10.20 16 3 C 0.12 4.03 6.53 22.59 0.15 4.17 16 4 C -0.23 -7.03 9.02 22.30 0.20 -6.83 16 5 C -0.09 -3.27 10.04 22.19 0.22 -3.05 16 6 C -0.16 -7.13 9.04 22.38 0.20 -6.93 16 7 C -0.03 -1.21 5.42 -19.87 -0.11 -1.31 16 8 C -0.13 -5.30 5.03 -19.77 -0.10 -5.40 16 9 C -0.03 -1.10 2.37 -11.65 -0.03 -1.13 16 10 H 0.08 2.61 7.76 -2.39 -0.02 2.59 16 11 C -0.13 -4.09 8.89 71.98 0.64 -3.45 16 12 C -0.11 -4.21 5.42 30.62 0.17 -4.04 16 13 C -0.10 -4.40 5.19 30.61 0.16 -4.24 16 14 C 0.06 3.28 2.34 -12.40 -0.03 3.25 16 15 H 0.03 2.06 7.20 -2.39 -0.02 2.04 16 16 C -0.51 -28.48 6.87 25.60 0.18 -28.30 16 17 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 18 C 0.02 0.89 5.45 84.65 0.46 1.35 16 19 N -0.93 -54.84 12.75 21.45 0.27 -54.57 16 20 Si 0.95 44.23 29.54 68.60 2.03 46.25 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 0.99 7.65 -2.38 -0.02 0.97 16 26 H 0.06 0.99 7.65 -2.39 -0.02 0.97 16 27 H 0.15 3.53 6.27 -2.91 -0.02 3.51 16 28 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.10 4.96 7.26 -2.91 -0.02 4.94 16 30 H 0.04 1.42 6.43 -2.38 -0.02 1.41 16 31 H 0.06 1.71 7.45 -2.39 -0.02 1.69 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.08 2.49 8.12 -2.39 -0.02 2.47 16 35 H 0.05 2.27 6.23 -2.39 -0.01 2.26 16 36 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.26 14.73 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -64.00 292.64 5.75 -58.25 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.05 Total: 14.71 kcal Atomic # 6 Polarization: -57.67 SS G_CDS: 3.22 Total: -54.45 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.27 Total: -54.57 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.82 Total: -10.20 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -64.00 5.75 -58.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260914433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.757 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds