Wall clock time and date at job start Mon Mar 30 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35907 * 116.99919 * 2 1 4 4 C 1.38471 * 120.16984 * 0.02562 * 3 2 1 5 5 C 1.38786 * 120.50167 * 180.02562 * 4 3 2 6 6 C 1.37759 * 119.73606 * 359.74502 * 5 4 3 7 7 C 1.38905 * 119.76999 * 0.31366 * 6 5 4 8 8 C 1.37877 * 120.62376 * 359.83856 * 7 6 5 9 9 C 1.50704 * 120.14226 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46974 * 264.99851 * 9 8 7 11 11 H 1.07994 * 120.00451 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99855 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99876 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99829 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47471 * 90.00073 * 14 12 10 16 16 H 1.48501 * 109.46836 * 209.99851 * 14 12 10 17 17 H 1.48495 * 109.47351 * 329.99718 * 14 12 10 18 18 C 1.50660 * 122.52929 * 180.37202 * 6 5 4 19 19 C 1.52721 * 110.59555 * 342.20018 * 18 6 5 20 20 C 1.53326 * 108.38617 * 51.13225 * 19 18 6 21 21 C 1.50646 * 117.70609 * 179.38290 * 5 4 3 22 22 H 1.08998 * 109.47631 * 60.00060 * 1 2 3 23 23 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47563 * 299.99717 * 1 2 3 25 25 H 1.08002 * 119.75028 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.69104 * 179.82103 * 7 6 5 27 27 H 1.08995 * 109.47029 * 25.00025 * 9 8 7 28 28 H 1.09004 * 109.47129 * 145.00565 * 9 8 7 29 29 H 0.96999 * 119.99924 * 180.02562 * 13 12 10 30 30 H 1.08996 * 109.24729 * 221.91231 * 18 6 5 31 31 H 1.08993 * 109.21616 * 102.47087 * 18 6 5 32 32 H 1.08996 * 109.68491 * 291.40822 * 19 18 6 33 33 H 1.08999 * 109.71414 * 170.87118 * 19 18 6 34 34 H 1.08996 * 109.68783 * 49.82192 * 20 19 18 35 35 H 1.09005 * 109.68239 * 170.37074 * 20 19 18 36 36 H 1.08999 * 109.24435 * 42.27930 * 21 5 4 37 37 H 1.09002 * 109.25383 * 282.85305 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2952 2.3745 0.0005 5 6 1.9181 3.6147 0.0000 6 6 3.2937 3.6885 0.0043 7 6 4.0469 2.5214 0.0024 8 6 3.4309 1.2879 -0.0002 9 6 4.2588 0.0286 -0.0028 10 6 4.4314 -0.4562 -1.4192 11 1 3.9866 0.0928 -2.2359 12 6 5.1573 -1.6008 -1.6724 13 7 5.3084 -2.0236 -2.9086 14 14 5.9261 -2.5508 -0.2598 15 1 4.9640 -3.5685 0.2341 16 1 7.1618 -3.2258 -0.7317 17 1 6.2639 -1.6135 0.8414 18 6 4.0346 5.0002 0.0122 19 6 3.1149 6.1394 -0.4224 20 6 1.8327 6.0723 0.4157 21 6 1.0406 4.8392 -0.0137 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2167 2.3164 0.0005 26 1 5.1253 2.5807 0.0029 27 1 5.2365 0.2357 0.4321 28 1 3.7548 -0.7387 0.5849 29 1 5.8187 -2.8290 -3.0867 30 1 4.8800 4.9395 -0.6730 31 1 4.4017 5.1988 1.0191 32 1 2.8691 6.0302 -1.4786 33 1 3.6113 7.0958 -0.2580 34 1 2.0884 5.9948 1.4724 35 1 1.2363 6.9689 0.2467 36 1 0.2063 4.6910 0.6720 37 1 0.6541 4.9931 -1.0212 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:34 Heat of formation + Delta-G solvation = -38.776172 kcal Electronic energy + Delta-G solvation = -17773.770767 eV Core-core repulsion = 15094.116687 eV Total energy + Delta-G solvation = -2679.654081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99218 -38.02144 -35.40038 -33.04391 -32.04972 -30.79764 -28.43527 -27.29534 -26.78924 -23.42246 -22.57296 -21.60381 -20.88072 -18.88013 -16.86998 -16.68812 -16.09032 -15.19536 -15.00345 -14.30532 -14.23305 -13.92170 -13.72369 -13.45142 -12.92599 -12.67065 -12.46292 -12.10518 -11.97750 -11.73077 -11.44052 -11.28747 -10.96734 -10.82709 -10.64136 -10.40854 -10.24208 -10.17268 -9.86122 -9.66780 -9.25426 -8.47525 -7.99630 -7.25175 -5.97191 -3.93878 1.95129 2.03691 3.36266 3.42586 3.46373 3.90454 4.31904 4.50922 4.83203 4.89698 4.96732 5.27181 5.32775 5.36270 5.41816 5.48848 5.51422 5.67337 5.69608 5.72511 5.78108 5.79948 5.94240 6.02826 6.12324 6.16763 6.23350 6.33810 6.38773 6.68424 6.75506 6.97150 7.12737 7.20078 7.41865 7.59109 7.80709 8.08579 8.61146 9.08111 9.63928 11.16306 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.006718 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.597224 B = 4167.074131 C = 4848.518823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.297 6.297 3 C 0.126 3.874 4 C -0.215 4.215 5 C -0.066 4.066 6 C -0.116 4.116 7 C -0.090 4.090 8 C -0.059 4.059 9 C 0.023 3.977 10 C -0.500 4.500 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.074 4.074 22 H 0.049 0.951 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.025 0.975 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 13.404 7.732 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.210 6.210 3 C 0.081 3.919 4 C -0.234 4.234 5 C -0.066 4.066 6 C -0.116 4.116 7 C -0.108 4.108 8 C -0.060 4.060 9 C -0.014 4.014 10 C -0.538 4.538 11 H 0.089 0.911 12 C -0.133 4.133 13 N -0.544 5.544 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.109 4.109 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.111 4.111 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.064 0.936 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.165 13.060 7.622 17.185 hybrid contribution 0.093 -0.620 0.491 0.796 sum -8.072 12.440 8.112 16.903 Atomic orbital electron populations 1.22939 0.80144 1.03226 1.00356 1.86258 1.19655 1.26627 1.88416 1.18791 0.92107 0.83778 0.97213 1.21033 0.99064 0.92019 1.11253 1.19091 0.92862 0.93519 1.01166 1.19370 0.92596 0.94682 1.04985 1.20870 0.99592 0.90543 0.99759 1.19608 0.90674 0.96907 0.98807 1.18636 0.93766 0.90315 0.98667 1.20896 1.32583 1.09518 0.90809 0.91108 1.24965 0.95983 0.96961 0.95399 1.69906 1.41688 1.23939 1.18848 0.86811 0.78972 0.80524 0.83222 1.20220 1.21417 1.19012 1.20340 0.97590 0.91626 1.01363 1.21528 0.96026 0.97927 1.00100 1.21518 0.96653 0.97195 1.00085 1.20377 0.97007 0.92340 1.01390 0.93257 0.88822 0.93595 0.86513 0.85891 0.95700 0.95417 0.92801 0.91122 0.91442 0.91736 0.91970 0.91807 0.92024 0.91541 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.19 9.66 -19.45 -0.19 -6.37 16 3 C 0.13 2.63 6.65 -39.32 -0.26 2.37 16 4 C -0.21 -3.74 8.62 -39.29 -0.34 -4.08 16 5 C -0.07 -1.07 5.74 -104.62 -0.60 -1.67 16 6 C -0.12 -1.96 5.74 -104.57 -0.60 -2.56 16 7 C -0.09 -1.77 9.24 -39.47 -0.36 -2.13 16 8 C -0.06 -1.34 5.08 -104.58 -0.53 -1.87 16 9 C 0.02 0.59 3.91 -29.03 -0.11 0.48 16 10 C -0.50 -14.83 9.65 -34.44 -0.33 -15.16 16 11 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -28.53 13.96 55.43 0.77 -27.75 16 14 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 18 C -0.07 -0.96 5.67 -28.05 -0.16 -1.12 16 19 C -0.12 -1.32 5.98 -26.71 -0.16 -1.48 16 20 C -0.12 -1.24 5.98 -26.70 -0.16 -1.40 16 21 C -0.07 -0.91 5.67 -28.05 -0.16 -1.07 16 22 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.12 1.71 6.28 -52.49 -0.33 1.38 16 26 H 0.12 2.29 8.05 -52.49 -0.42 1.87 16 27 H 0.02 0.62 7.11 -51.93 -0.37 0.25 16 28 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 298.37 15.07 4.50 4.50 Total: -1.00 -32.86 298.37 -8.14 -41.00 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.67 Total: -2.57 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.88 Total: -26.36 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.77 Total: -27.75 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.19 Total: -6.37 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.86 -8.14 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.223 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds