Wall clock time and date at job start Mon Mar 30 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35907 * 116.99919 * 2 1 4 4 C 1.38471 * 120.16984 * 0.02562 * 3 2 1 5 5 C 1.38786 * 120.50167 * 180.02562 * 4 3 2 6 6 C 1.37759 * 119.73606 * 359.74502 * 5 4 3 7 7 C 1.38905 * 119.76999 * 0.31366 * 6 5 4 8 8 C 1.37877 * 120.62376 * 359.83856 * 7 6 5 9 9 C 1.50704 * 120.14226 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46974 * 264.99851 * 9 8 7 11 11 H 1.07994 * 120.00451 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99855 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99876 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99829 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47471 * 90.00073 * 14 12 10 16 16 H 1.48501 * 109.46836 * 209.99851 * 14 12 10 17 17 H 1.48495 * 109.47351 * 329.99718 * 14 12 10 18 18 C 1.50660 * 122.52929 * 180.37202 * 6 5 4 19 19 C 1.52721 * 110.59555 * 342.20018 * 18 6 5 20 20 C 1.53326 * 108.38617 * 51.13225 * 19 18 6 21 21 C 1.50646 * 117.70609 * 179.38290 * 5 4 3 22 22 H 1.08998 * 109.47631 * 60.00060 * 1 2 3 23 23 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47563 * 299.99717 * 1 2 3 25 25 H 1.08002 * 119.75028 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.69104 * 179.82103 * 7 6 5 27 27 H 1.08995 * 109.47029 * 25.00025 * 9 8 7 28 28 H 1.09004 * 109.47129 * 145.00565 * 9 8 7 29 29 H 0.96999 * 119.99924 * 180.02562 * 13 12 10 30 30 H 1.08996 * 109.24729 * 221.91231 * 18 6 5 31 31 H 1.08993 * 109.21616 * 102.47087 * 18 6 5 32 32 H 1.08996 * 109.68491 * 291.40822 * 19 18 6 33 33 H 1.08999 * 109.71414 * 170.87118 * 19 18 6 34 34 H 1.08996 * 109.68783 * 49.82192 * 20 19 18 35 35 H 1.09005 * 109.68239 * 170.37074 * 20 19 18 36 36 H 1.08999 * 109.24435 * 42.27930 * 21 5 4 37 37 H 1.09002 * 109.25383 * 282.85305 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2952 2.3745 0.0005 5 6 1.9181 3.6147 0.0000 6 6 3.2937 3.6885 0.0043 7 6 4.0469 2.5214 0.0024 8 6 3.4309 1.2879 -0.0002 9 6 4.2588 0.0286 -0.0028 10 6 4.4314 -0.4562 -1.4192 11 1 3.9866 0.0928 -2.2359 12 6 5.1573 -1.6008 -1.6724 13 7 5.3084 -2.0236 -2.9086 14 14 5.9261 -2.5508 -0.2598 15 1 4.9640 -3.5685 0.2341 16 1 7.1618 -3.2258 -0.7317 17 1 6.2639 -1.6135 0.8414 18 6 4.0346 5.0002 0.0122 19 6 3.1149 6.1394 -0.4224 20 6 1.8327 6.0723 0.4157 21 6 1.0406 4.8392 -0.0137 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2167 2.3164 0.0005 26 1 5.1253 2.5807 0.0029 27 1 5.2365 0.2357 0.4321 28 1 3.7548 -0.7387 0.5849 29 1 5.8187 -2.8290 -3.0867 30 1 4.8800 4.9395 -0.6730 31 1 4.4017 5.1988 1.0191 32 1 2.8691 6.0302 -1.4786 33 1 3.6113 7.0958 -0.2580 34 1 2.0884 5.9948 1.4724 35 1 1.2363 6.9689 0.2467 36 1 0.2063 4.6910 0.6720 37 1 0.6541 4.9931 -1.0212 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:34 Heat of formation + Delta-G solvation = -58.246704 kcal Electronic energy + Delta-G solvation = -17774.615073 eV Core-core repulsion = 15094.116687 eV Total energy + Delta-G solvation = -2680.498386 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35989 -39.29438 -36.78364 -35.00194 -33.47489 -32.37839 -29.80226 -28.86497 -28.03974 -25.06267 -23.82600 -22.91250 -22.38580 -20.13198 -18.98395 -18.21469 -17.43450 -16.55384 -16.51860 -15.95454 -15.40225 -15.33094 -14.89256 -14.67811 -14.61447 -14.05050 -13.91527 -13.69810 -13.40210 -13.13716 -12.78221 -12.72084 -12.44169 -12.31123 -12.01756 -11.81995 -11.69534 -11.63479 -11.30208 -11.25243 -11.01883 -10.77902 -9.46228 -8.71778 -8.29349 -6.32384 0.49709 0.60991 1.33491 1.35518 1.47688 2.35117 2.57711 2.87216 3.04716 3.76726 3.87088 4.03306 4.11674 4.20339 4.31856 4.36129 4.39781 4.43007 4.61534 4.70049 4.71723 4.76240 4.83431 4.93205 5.01556 5.05907 5.09251 5.13354 5.19487 5.23005 5.37623 5.52296 5.58047 5.59080 5.72853 5.87324 6.09723 6.26107 6.67443 6.72109 7.29483 8.87768 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.006718 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.597224 B = 4167.074131 C = 4848.518823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.105 3.895 4 C -0.212 4.212 5 C -0.061 4.061 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.109 4.109 9 C 0.035 3.965 10 C -0.507 4.507 11 H 0.021 0.979 12 C 0.007 3.993 13 N -0.951 5.951 14 Si 0.951 3.049 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.248 1.248 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.075 4.075 22 H 0.057 0.943 23 H 0.109 0.891 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.121 0.879 27 H 0.027 0.973 28 H 0.020 0.980 29 H 0.267 0.733 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 15.486 9.565 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.060 3.940 4 C -0.231 4.231 5 C -0.061 4.061 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.109 4.109 9 C -0.002 4.002 10 C -0.545 4.545 11 H 0.039 0.961 12 C -0.190 4.190 13 N -0.592 5.592 14 Si 0.774 3.226 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.172 1.172 18 C -0.111 4.111 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.112 4.112 22 H 0.076 0.924 23 H 0.127 0.873 24 H 0.090 0.910 25 H 0.164 0.836 26 H 0.139 0.861 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.288 15.162 9.461 20.141 hybrid contribution 0.334 -1.178 -0.160 1.234 sum -8.954 13.984 9.301 19.032 Atomic orbital electron populations 1.23262 0.77315 1.04930 1.01923 1.86176 1.22819 1.27368 1.88716 1.18987 0.91919 0.84971 0.98088 1.21379 1.00420 0.91296 1.10004 1.19688 0.93164 0.94893 0.98367 1.19795 0.93298 0.95264 1.03613 1.21020 0.99926 0.90947 1.00070 1.19567 0.91789 0.96507 1.03059 1.18385 0.94419 0.91892 0.95545 1.21077 1.32140 1.09399 0.91892 0.96086 1.25950 0.96496 0.98024 0.98489 1.70061 1.42918 1.24834 1.21412 0.85654 0.78215 0.79084 0.79690 1.19293 1.20314 1.17182 1.20433 0.97714 0.90589 1.02320 1.21550 0.96146 0.97921 0.99771 1.21540 0.96300 0.97332 0.99942 1.20509 0.96964 0.91052 1.02639 0.92438 0.87262 0.91046 0.83572 0.86057 0.95436 0.96155 0.92421 0.91411 0.89979 0.92400 0.89493 0.91569 0.89287 0.89543 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.34 -14.36 9.66 -92.51 -0.89 -15.26 16 3 C 0.11 4.48 6.65 22.44 0.15 4.63 16 4 C -0.21 -7.13 8.62 22.46 0.19 -6.93 16 5 C -0.06 -1.85 5.74 -19.86 -0.11 -1.97 16 6 C -0.12 -3.93 5.74 -19.83 -0.11 -4.04 16 7 C -0.10 -4.11 9.24 22.34 0.21 -3.90 16 8 C -0.11 -5.09 5.08 -19.83 -0.10 -5.19 16 9 C 0.03 1.84 3.91 29.10 0.11 1.95 16 10 C -0.51 -31.69 9.65 25.60 0.25 -31.45 16 11 H 0.02 1.46 7.98 -2.91 -0.02 1.44 16 12 C 0.01 0.41 5.47 84.66 0.46 0.88 16 13 N -0.95 -62.27 13.96 21.45 0.30 -61.97 16 14 Si 0.95 46.74 27.47 68.60 1.88 48.62 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 18 C -0.07 -1.81 5.67 29.74 0.17 -1.64 16 19 C -0.12 -2.19 5.98 30.61 0.18 -2.01 16 20 C -0.11 -1.91 5.98 30.61 0.18 -1.73 16 21 C -0.07 -1.55 5.67 29.74 0.17 -1.38 16 22 H 0.06 1.50 7.66 -2.39 -0.02 1.48 16 23 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.07 1.62 7.66 -2.39 -0.02 1.60 16 25 H 0.15 3.89 6.28 -2.91 -0.02 3.87 16 26 H 0.12 4.72 8.05 -2.91 -0.02 4.70 16 27 H 0.03 1.40 7.11 -2.39 -0.02 1.38 16 28 H 0.02 1.08 7.13 -2.39 -0.02 1.06 16 29 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 30 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.09 1.49 8.12 -2.39 -0.02 1.48 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -75.42 298.37 5.13 -70.29 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.98 Total: 9.41 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 2.86 Total: -51.09 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.30 Total: -61.97 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.89 Total: -15.26 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.88 Total: 48.62 kcal Total: -75.42 5.13 -70.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.042 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds