Wall clock time and date at job start Mon Mar 30 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99752 * 2 1 4 4 C 1.38733 * 120.05264 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94284 * 180.02562 * 4 3 2 6 6 C 1.38272 * 120.05863 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.94730 * 179.97438 * 6 5 4 8 8 C 1.53774 * 113.61697 * 119.99822 * 7 6 5 9 9 C 1.53781 * 87.08351 * 140.06552 * 8 7 6 10 10 C 1.53004 * 113.61414 * 89.11463 * 9 8 7 11 11 C 1.50699 * 109.46843 * 175.00274 * 10 9 8 12 12 H 1.08002 * 120.00516 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99783 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99956 * 180.27458 * 13 11 10 16 16 H 1.48503 * 109.47407 * 269.72718 * 15 13 11 17 17 H 1.48505 * 109.47281 * 29.72474 * 15 13 11 18 18 H 1.48501 * 109.47274 * 149.72572 * 15 13 11 19 19 C 1.53777 * 113.69111 * 217.53570 * 7 6 5 20 20 C 1.38260 * 120.10571 * 0.25239 * 6 5 4 21 21 C 1.38148 * 120.06101 * 359.44802 * 20 6 5 22 22 H 1.09002 * 109.47266 * 59.99921 * 1 2 3 23 23 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47121 * 300.00183 * 1 2 3 25 25 H 1.08002 * 120.02716 * 359.97438 * 4 3 2 26 26 H 1.07999 * 119.97407 * 180.02562 * 5 4 3 27 27 H 1.09004 * 112.84829 * 348.80318 * 7 6 5 28 28 H 1.09001 * 113.61295 * 25.51421 * 8 7 6 29 29 H 1.08998 * 113.69218 * 254.62637 * 8 7 6 30 30 H 1.09000 * 113.61502 * 219.93703 * 9 8 7 31 31 H 1.09001 * 109.46361 * 55.00616 * 10 9 8 32 32 H 1.08997 * 109.46991 * 295.00506 * 10 9 8 33 33 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 34 34 H 1.09002 * 113.61475 * 105.45656 * 19 7 6 35 35 H 1.09005 * 113.61484 * 334.55692 * 19 7 6 36 36 H 1.08005 * 119.97238 * 179.70554 * 20 6 5 37 37 H 1.07997 * 120.03008 * 180.24939 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3019 3.6759 0.0016 7 6 3.9860 5.0186 0.0028 8 6 3.6385 5.8881 -1.2170 9 6 3.5951 7.0852 -0.2526 10 6 4.9471 7.7795 -0.0763 11 6 4.7742 9.0044 0.7844 12 1 3.7977 9.2622 1.1671 13 6 5.8626 9.7966 1.0826 14 7 7.0515 9.4835 0.6154 15 14 5.6498 11.3106 2.1557 16 1 5.3496 12.4862 1.2995 17 1 4.5293 11.0909 3.1052 18 1 6.9012 11.5586 2.9158 19 6 3.2713 6.0755 0.8612 20 6 1.9211 3.6048 0.0069 21 6 1.2915 2.3751 0.0001 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 4.0208 0.3799 0.0014 26 1 5.1345 2.5751 0.0011 27 1 5.0561 4.9482 0.1982 28 1 2.6721 5.6503 -1.6615 29 1 4.4395 5.9496 -1.9535 30 1 2.7844 7.7837 -0.4598 31 1 5.3348 8.0727 -1.0519 32 1 5.6474 7.0949 0.4023 33 1 7.8171 10.0411 0.8248 34 1 3.7769 6.2875 1.8033 35 1 2.2044 5.8889 0.9848 36 1 1.3342 4.5114 0.0121 37 1 0.2129 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260967965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:50 Heat of formation + Delta-G solvation = -25.493071 kcal Electronic energy + Delta-G solvation = -17010.679478 eV Core-core repulsion = 14331.601396 eV Total energy + Delta-G solvation = -2679.078082 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.31976 -40.11191 -37.86763 -34.98486 -32.12208 -31.84168 -29.94162 -28.12573 -26.45280 -25.90937 -24.43004 -23.26515 -21.90782 -19.23372 -19.11197 -18.51359 -17.30215 -16.69064 -16.59453 -16.49071 -15.58756 -15.54263 -14.56870 -14.53575 -14.43413 -14.19975 -13.79022 -13.52925 -13.35465 -13.09889 -12.83618 -12.75400 -12.47946 -12.36471 -12.05908 -11.79021 -11.69312 -11.36980 -10.99044 -10.94115 -10.69039 -10.48175 -9.91323 -8.95295 -8.17570 -6.27439 0.42851 0.47936 1.40276 1.41489 1.52579 2.42221 2.42253 2.79910 3.15324 3.76419 3.88132 3.96116 4.01206 4.04306 4.21015 4.29884 4.35937 4.42329 4.49104 4.57649 4.73603 4.77554 4.87759 4.90843 5.00831 5.07282 5.15427 5.25956 5.33113 5.36513 5.43884 5.52089 5.63888 5.81016 5.84631 5.86020 5.90762 6.30626 6.49322 6.89061 7.41090 8.94194 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.055108 B = 0.003852 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.971199 B = 7267.158677 C = 7435.615809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.107 3.893 4 C -0.160 4.160 5 C -0.088 4.088 6 C -0.107 4.107 7 C -0.061 4.061 8 C -0.120 4.120 9 C -0.103 4.103 10 C 0.045 3.955 11 C -0.534 4.534 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.962 3.038 16 H -0.273 1.273 17 H -0.263 1.263 18 H -0.283 1.283 19 C -0.118 4.118 20 C -0.082 4.082 21 C -0.204 4.204 22 H 0.063 0.937 23 H 0.119 0.881 24 H 0.062 0.938 25 H 0.139 0.861 26 H 0.134 0.866 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.061 0.939 31 H -0.012 1.012 32 H -0.005 1.005 33 H 0.262 0.738 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 -17.241 -1.359 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.062 3.938 4 C -0.178 4.178 5 C -0.106 4.106 6 C -0.107 4.107 7 C -0.079 4.079 8 C -0.157 4.157 9 C -0.122 4.122 10 C 0.008 3.992 11 C -0.572 4.572 12 H 0.077 0.923 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.787 3.213 16 H -0.198 1.198 17 H -0.188 1.188 18 H -0.209 1.209 19 C -0.155 4.155 20 C -0.100 4.100 21 C -0.223 4.223 22 H 0.082 0.918 23 H 0.137 0.863 24 H 0.081 0.919 25 H 0.157 0.843 26 H 0.152 0.848 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.006 0.994 32 H 0.013 0.987 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.154 0.846 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.257 -17.390 -1.354 21.909 hybrid contribution 0.354 1.123 0.445 1.258 sum -12.903 -16.267 -0.909 20.783 Atomic orbital electron populations 1.23327 0.76615 1.05485 1.02177 1.86030 1.23353 1.26740 1.88890 1.19174 0.92568 0.84688 0.97400 1.20576 0.91891 0.98696 1.06646 1.21062 1.00474 0.91088 0.97928 1.19779 0.94109 0.94272 1.02589 1.21285 0.98721 0.90246 0.97691 1.23054 1.01632 0.95376 0.95640 1.22344 0.98132 0.94961 0.96741 1.18790 0.91876 0.94037 0.94535 1.21671 0.94451 1.09925 1.31167 0.92330 1.25966 0.94955 1.01365 0.97674 1.70101 1.00114 1.40302 1.47032 0.85485 0.77737 0.79227 0.78838 1.19821 1.18756 1.20869 1.22989 1.00361 0.95120 0.97003 1.20994 0.93793 0.97860 0.97342 1.21423 1.01019 0.91615 1.08225 0.91815 0.86290 0.91903 0.84305 0.84805 0.90397 0.88735 0.92708 0.92011 0.99391 0.98694 0.92885 0.93372 0.88635 0.84633 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.11 10.50 -92.41 -0.97 -8.08 16 3 C 0.11 2.53 6.69 22.51 0.15 2.68 16 4 C -0.16 -3.91 9.99 22.37 0.22 -3.69 16 5 C -0.09 -2.32 9.70 22.26 0.22 -2.10 16 6 C -0.11 -3.05 5.29 -19.85 -0.11 -3.15 16 7 C -0.06 -2.03 3.63 -11.02 -0.04 -2.07 16 8 C -0.12 -4.07 7.14 31.12 0.22 -3.85 16 9 C -0.10 -4.26 3.78 -10.27 -0.04 -4.30 16 10 C 0.04 2.38 4.65 29.85 0.14 2.52 16 11 C -0.53 -30.72 9.10 25.60 0.23 -30.49 16 12 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 13 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 14 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 15 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 C -0.12 -4.20 6.99 31.12 0.22 -3.99 16 20 C -0.08 -2.04 8.62 22.25 0.19 -1.84 16 21 C -0.20 -4.48 9.04 22.37 0.20 -4.27 16 22 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 23 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.67 7.66 -2.38 -0.02 0.66 16 25 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 26 H 0.13 3.26 8.05 -2.91 -0.02 3.24 16 27 H 0.08 2.85 7.67 -2.38 -0.02 2.83 16 28 H 0.09 2.72 7.73 -2.39 -0.02 2.70 16 29 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 30 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H -0.01 -0.30 7.39 -2.39 -0.02 -0.32 16 33 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 34 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 35 H 0.10 2.85 6.30 -2.38 -0.02 2.84 16 36 H 0.14 3.04 6.64 -2.91 -0.02 3.02 16 37 H 0.15 2.40 6.30 -2.91 -0.02 2.38 16 Total: -1.00 -66.80 304.63 5.57 -61.23 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.04 Total: 10.29 kcal Atomic # 6 Polarization: -56.08 SS G_CDS: 3.19 Total: -52.90 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.28 Total: -57.38 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.97 Total: -8.08 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.80 5.57 -61.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.741 kcal (2) G-P(sol) polarization free energy of solvation -66.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds