Wall clock time and date at job start Mon Mar 30 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46621 * 2 1 4 4 C 1.50695 * 109.47278 * 240.00266 * 2 1 3 5 5 H 1.08005 * 119.99618 * 245.55791 * 4 2 1 6 6 C 1.37879 * 120.00522 * 65.55808 * 4 2 1 7 7 N 1.31516 * 119.99581 * 9.53087 * 6 4 2 8 8 Si 1.86793 * 120.00437 * 189.53181 * 6 4 2 9 9 H 1.48496 * 109.46928 * 84.99065 * 8 6 4 10 10 H 1.48498 * 109.47365 * 204.99346 * 8 6 4 11 11 H 1.48503 * 109.47091 * 324.99557 * 8 6 4 12 12 C 1.50702 * 109.47283 * 119.99496 * 2 1 3 13 13 C 1.38470 * 119.74464 * 59.99058 * 12 2 1 14 14 O 1.35910 * 120.17372 * 0.02562 * 13 12 2 15 15 C 1.38719 * 119.65709 * 180.02562 * 13 12 2 16 16 C 1.37875 * 119.70866 * 0.13810 * 15 13 12 17 17 C 1.38909 * 120.62293 * 359.97438 * 16 15 13 18 18 C 1.37759 * 119.77482 * 359.72841 * 17 16 15 19 19 C 1.50639 * 122.54865 * 180.81635 * 18 17 16 20 20 C 1.52721 * 110.60608 * 342.01129 * 19 18 17 21 21 C 1.53324 * 108.41002 * 51.10578 * 20 19 18 22 22 C 1.50648 * 117.70039 * 179.41886 * 17 16 15 23 23 H 1.08998 * 109.47471 * 301.41379 * 1 2 3 24 24 H 1.08996 * 109.47044 * 61.41657 * 1 2 3 25 25 H 1.09006 * 109.46507 * 181.41379 * 1 2 3 26 26 H 0.96997 * 119.99844 * 179.97438 * 7 6 4 27 27 H 0.96703 * 113.99738 * 270.02602 * 14 13 12 28 28 H 1.07996 * 120.14535 * 180.11768 * 15 13 12 29 29 H 1.08001 * 119.68938 * 180.02562 * 16 15 13 30 30 H 1.09006 * 109.24672 * 102.30750 * 19 18 17 31 31 H 1.09003 * 109.24857 * 221.71735 * 19 18 17 32 32 H 1.08996 * 109.67864 * 291.37376 * 20 19 18 33 33 H 1.09001 * 109.70372 * 170.85089 * 20 19 18 34 34 H 1.08995 * 109.67750 * 170.43467 * 21 20 19 35 35 H 1.08995 * 109.68150 * 49.88236 * 21 20 19 36 36 H 1.08996 * 109.25758 * 282.46790 * 22 17 16 37 37 H 1.09000 * 109.25365 * 41.89677 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5773 -1.6378 -1.1338 6 6 1.7964 -0.1763 -2.4795 7 7 1.3024 1.0373 -2.5931 8 14 2.1784 -1.1762 -4.0103 9 1 1.0259 -2.0579 -4.3259 10 1 2.4272 -0.2591 -5.1514 11 1 3.3859 -2.0068 -3.7705 12 6 2.0324 -0.7103 1.2305 13 6 1.6945 -2.0360 1.4446 14 8 0.9133 -2.6951 0.5488 15 6 2.1575 -2.6879 2.5782 16 6 2.9470 -2.0093 3.4821 17 6 3.2839 -0.6787 3.2683 18 6 2.8304 -0.0310 2.1402 19 6 3.1723 1.4045 1.8373 20 6 3.6631 2.1172 3.0957 21 6 4.7709 1.2691 3.7316 22 6 4.1388 0.0025 4.3049 23 1 -0.3634 0.5356 0.8770 24 1 -0.3633 0.4917 -0.9024 25 1 -0.3632 -1.0274 0.0254 26 1 1.1367 1.4131 -3.4718 27 1 -0.0343 -2.6303 0.7308 28 1 1.9004 -3.7223 2.7520 29 1 3.3077 -2.5172 4.3643 30 1 3.9544 1.4351 1.0786 31 1 2.2855 1.9129 1.4590 32 1 2.8381 2.2302 3.7989 33 1 4.0577 3.0984 2.8320 34 1 5.2522 1.8332 4.5304 35 1 5.5083 1.0012 2.9749 36 1 3.5212 0.2660 5.1635 37 1 4.9267 -0.6791 4.6254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:59 Heat of formation + Delta-G solvation = -42.894062 kcal Electronic energy + Delta-G solvation = -18350.019314 eV Core-core repulsion = 15670.186668 eV Total energy + Delta-G solvation = -2679.832646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85232 -37.22504 -34.45870 -34.44028 -31.96478 -29.94603 -29.04673 -27.31704 -25.01885 -23.22394 -22.40191 -22.11001 -19.36085 -19.14793 -17.03176 -16.35489 -15.66154 -14.97471 -14.67939 -14.45474 -13.71004 -13.53978 -13.37622 -12.79978 -12.64332 -12.32233 -12.18992 -11.92673 -11.50686 -11.44978 -11.00089 -10.82215 -10.63788 -10.57263 -10.54108 -10.27635 -10.19139 -10.04978 -9.72071 -9.12601 -8.83007 -8.20935 -7.83102 -7.55119 -5.94878 -3.92406 1.92213 2.07279 3.37755 3.43110 3.48510 4.25712 4.54682 4.95622 5.07014 5.09269 5.17553 5.39207 5.54721 5.55701 5.64359 5.77644 5.84303 5.92435 5.97221 6.15236 6.18174 6.32204 6.38134 6.46178 6.62494 6.69247 6.74540 6.76670 6.86960 7.04789 7.13085 7.21653 7.33597 7.56209 7.74869 7.97865 8.06314 8.44855 8.57166 9.09485 9.68168 11.14298 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.008171 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.471076 B = 3425.958745 C = 4001.559675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.070 3.930 3 H 0.050 0.950 4 C -0.484 4.484 5 H 0.057 0.943 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.276 1.276 12 C -0.059 4.059 13 C 0.106 3.894 14 O -0.478 6.478 15 C -0.156 4.156 16 C -0.133 4.133 17 C -0.096 4.096 18 C -0.069 4.069 19 C -0.078 4.078 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.072 4.072 23 H 0.009 0.991 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.258 0.742 27 H 0.374 0.626 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -0.769 12.458 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.068 0.932 4 C -0.522 4.522 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.201 1.201 12 C -0.060 4.060 13 C 0.062 3.938 14 O -0.288 6.288 15 C -0.175 4.175 16 C -0.152 4.152 17 C -0.096 4.096 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.109 4.109 23 H 0.028 0.972 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.229 0.771 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.665 -0.787 12.051 12.367 hybrid contribution -0.334 -0.650 -0.769 1.061 sum 2.331 -1.437 11.282 11.609 Atomic orbital electron populations 1.21778 0.98631 0.98889 0.99544 1.17936 0.92097 0.96335 0.88466 0.93171 1.21014 1.34590 1.07107 0.89523 0.92434 1.24914 0.95723 0.94667 0.98795 1.69958 1.46080 1.13941 1.23494 0.86651 0.78738 0.80106 0.82755 1.20701 1.21605 1.20133 1.21044 0.95258 0.93122 0.96574 1.18203 0.96552 0.90297 0.88791 1.84959 1.19766 1.73461 1.50573 1.21242 1.01710 0.99848 0.94658 1.20696 1.00858 0.94216 0.99393 1.19468 1.00006 0.94022 0.96091 1.19395 0.97854 0.95988 0.93726 1.20479 1.02135 0.91775 0.97111 1.21566 0.98157 0.98249 0.97595 1.21538 0.98086 0.95999 1.00029 1.20362 0.97649 0.96465 0.96448 0.97192 0.91301 0.94817 0.93187 0.77077 0.86708 0.87096 0.90478 0.90010 0.92121 0.91901 0.92173 0.91675 0.91473 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.84 37.16 0.33 -2.71 16 2 C 0.07 1.73 1.97 -92.92 -0.18 1.54 16 3 H 0.05 1.32 5.43 -51.93 -0.28 1.04 16 4 C -0.48 -13.45 7.47 -34.44 -0.26 -13.71 16 5 H 0.06 1.68 7.34 -52.48 -0.39 1.30 16 6 C 0.06 1.66 5.19 -17.82 -0.09 1.57 16 7 N -0.90 -25.67 12.17 55.43 0.67 -25.00 16 8 Si 0.89 22.06 29.55 -169.99 -5.02 17.04 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 C -0.06 -1.30 4.77 -104.34 -0.50 -1.80 16 13 C 0.11 2.19 6.13 -39.32 -0.24 1.95 16 14 O -0.48 -9.83 10.95 -19.46 -0.21 -10.05 16 15 C -0.16 -2.77 9.99 -39.54 -0.40 -3.16 16 16 C -0.13 -2.18 9.60 -39.47 -0.38 -2.56 16 17 C -0.10 -1.62 5.74 -104.57 -0.60 -2.22 16 18 C -0.07 -1.35 5.74 -104.63 -0.60 -1.95 16 19 C -0.08 -1.39 4.63 -28.06 -0.13 -1.52 16 20 C -0.12 -1.64 5.98 -26.71 -0.16 -1.80 16 21 C -0.12 -1.51 5.98 -26.70 -0.16 -1.67 16 22 C -0.07 -0.96 5.67 -28.05 -0.16 -1.12 16 23 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.07 1.76 6.88 -51.93 -0.36 1.40 16 25 H 0.03 0.72 5.24 -51.93 -0.27 0.44 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.37 6.13 7.52 45.56 0.34 6.47 16 28 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.11 1.49 8.05 -52.49 -0.42 1.06 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.55 6.57 -51.93 -0.34 1.21 16 32 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -30.12 290.13 -8.37 -38.49 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.65 Total: 4.30 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -3.53 Total: -29.17 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.67 Total: -25.00 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.21 Total: -10.05 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.12 -8.37 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.405 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds