Wall clock time and date at job start Mon Mar 30 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99523 * 2 1 4 4 C 1.38745 * 120.05769 * 0.04591 * 3 2 1 5 5 C 1.38122 * 119.94745 * 179.97438 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11401 * 359.97438 * 6 5 4 8 8 C 1.38169 * 120.05492 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.02848 * 179.97438 * 8 7 6 10 10 C 1.53787 * 113.61334 * 37.49397 * 9 8 7 11 11 C 1.53785 * 87.08104 * 220.01895 * 10 9 8 12 12 C 1.52993 * 113.69323 * 270.87402 * 11 10 9 13 13 C 1.50696 * 109.47311 * 272.53684 * 12 11 10 14 14 H 1.07996 * 119.99817 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00150 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99969 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99967 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47426 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47221 * 120.00123 * 17 15 13 20 20 H 1.48504 * 109.46978 * 240.00124 * 17 15 13 21 21 C 1.53784 * 113.61254 * 299.99931 * 9 8 7 22 22 H 1.08995 * 109.47018 * 299.99822 * 1 2 3 23 23 H 1.08995 * 109.47252 * 60.00318 * 1 2 3 24 24 H 1.09003 * 109.46721 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.02960 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.97891 * 180.29661 * 5 4 3 27 27 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.97188 * 180.02562 * 7 6 5 29 29 H 1.09001 * 112.85256 * 168.80739 * 9 8 7 30 30 H 1.08999 * 113.61239 * 334.56760 * 10 9 8 31 31 H 1.08996 * 113.60870 * 105.47387 * 10 9 8 32 32 H 1.08996 * 113.61389 * 139.97903 * 11 10 9 33 33 H 1.09001 * 109.47034 * 32.53659 * 12 11 10 34 34 H 1.08997 * 109.47304 * 152.53478 * 12 11 10 35 35 H 0.97006 * 120.00504 * 179.97438 * 16 15 13 36 36 H 1.09002 * 113.61294 * 254.52529 * 21 9 8 37 37 H 1.08998 * 113.61766 * 25.34586 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 0.0010 5 6 1.9207 3.6048 0.0015 6 6 3.3018 3.6759 0.0005 7 6 4.0559 2.5172 -0.0004 8 6 3.4311 1.2849 -0.0010 9 6 4.2537 0.0223 -0.0026 10 6 5.5274 0.1158 0.8542 11 6 6.2405 -0.6670 -0.2610 12 6 6.1714 -2.1855 -0.0871 13 6 7.3209 -2.6456 0.7719 14 1 8.0300 -1.9269 1.1552 15 6 7.4672 -3.9841 1.0686 16 7 6.6034 -4.8592 0.6023 17 14 8.8917 -4.5543 2.1340 18 1 9.7144 -3.3828 2.5291 19 1 8.3635 -5.2218 3.3509 20 1 9.7300 -5.5117 1.3686 21 6 5.1794 -0.1082 -1.2237 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2127 2.3203 0.0013 26 1 1.3338 4.5114 0.0071 27 1 3.7920 4.6382 0.0005 28 1 5.1343 2.5754 -0.0008 29 1 3.6594 -0.8704 0.1921 30 1 5.8966 1.1338 0.9779 31 1 5.4608 -0.4289 1.7960 32 1 7.2493 -0.3102 -0.4684 33 1 5.2297 -2.4539 0.3918 34 1 6.2323 -2.6661 -1.0635 35 1 6.7065 -5.8010 0.8107 36 1 4.8320 -0.8337 -1.9593 37 1 5.4524 0.8485 -1.6690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:51 Heat of formation + Delta-G solvation = -7.366292 kcal Electronic energy + Delta-G solvation = -17411.306575 eV Core-core repulsion = 14733.014529 eV Total energy + Delta-G solvation = -2678.292046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33502 -38.39762 -36.96227 -32.90646 -31.24934 -30.03512 -28.27499 -27.17342 -24.94121 -24.55982 -22.72957 -21.88085 -20.69726 -18.04216 -17.60220 -16.44351 -16.08584 -15.66976 -15.53657 -14.56937 -14.34881 -14.14643 -13.89099 -13.32649 -12.93073 -12.40152 -12.22805 -11.99328 -11.74843 -11.67658 -11.36696 -11.10749 -11.07676 -10.90848 -10.60439 -10.41016 -10.23063 -9.63499 -9.25397 -9.09452 -8.83466 -8.66386 -8.27092 -7.96165 -5.92980 -3.94177 1.41872 1.54040 3.35238 3.37817 3.42595 3.46976 3.84388 4.51640 4.81032 4.87172 5.06775 5.11131 5.14195 5.37754 5.41011 5.42561 5.46470 5.53173 5.57121 5.70189 5.77319 5.81149 6.18447 6.31031 6.34374 6.39478 6.49959 6.61243 6.81535 6.86787 6.87966 6.91359 7.06808 7.37624 7.51147 7.77111 7.92143 8.08030 8.52144 9.12807 9.69110 11.18403 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032758 B = 0.004960 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.556875 B = 5644.028883 C = 6164.664491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.126 3.874 4 C -0.211 4.211 5 C -0.096 4.096 6 C -0.158 4.158 7 C -0.082 4.082 8 C -0.085 4.085 9 C -0.067 4.067 10 C -0.126 4.126 11 C -0.092 4.092 12 C 0.037 3.963 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.132 4.132 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.259 0.741 36 H 0.062 0.938 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 14.997 -1.757 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.114 4.114 6 C -0.176 4.176 7 C -0.100 4.100 8 C -0.086 4.086 9 C -0.085 4.085 10 C -0.163 4.163 11 C -0.110 4.110 12 C 0.000 4.000 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.170 4.170 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.117 0.883 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.343 14.611 -1.754 18.580 hybrid contribution 0.361 -0.215 0.603 0.735 sum -10.982 14.397 -1.151 18.144 Atomic orbital electron populations 1.23025 0.78969 1.03872 1.00843 1.86161 1.20778 1.26710 1.88521 1.18935 0.92018 0.84128 0.96886 1.21166 0.99658 0.92496 1.09612 1.20824 0.94679 0.96650 0.99218 1.21007 0.93871 0.98223 1.04483 1.20933 1.00206 0.90978 0.97854 1.19440 0.90248 0.96258 1.02641 1.21434 0.94066 0.94416 0.98611 1.23037 0.95004 0.99418 0.98870 1.22488 0.96093 0.98886 0.93580 1.18963 0.97193 0.86942 0.96899 1.21288 1.10763 0.92307 1.30764 0.92655 1.25015 0.96268 0.96984 0.96267 1.69977 1.36050 1.01937 1.45669 0.86580 0.82650 0.78694 0.80338 1.19767 1.21111 1.21114 1.23123 0.97551 1.00196 0.96098 0.92970 0.92979 0.88275 0.85902 0.86338 0.86257 0.85221 0.87950 0.91506 0.91096 0.92056 0.96193 0.96393 0.93172 0.91877 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.68 9.43 -19.44 -0.18 -4.87 16 3 C 0.13 1.90 6.66 -39.22 -0.26 1.64 16 4 C -0.21 -2.62 9.04 -39.44 -0.36 -2.98 16 5 C -0.10 -1.09 10.04 -39.60 -0.40 -1.49 16 6 C -0.16 -1.89 10.04 -39.56 -0.40 -2.28 16 7 C -0.08 -1.14 8.61 -39.60 -0.34 -1.48 16 8 C -0.09 -1.36 5.30 -104.47 -0.55 -1.92 16 9 C -0.07 -1.22 3.52 -90.96 -0.32 -1.54 16 10 C -0.13 -2.39 6.99 -25.91 -0.18 -2.57 16 11 C -0.09 -1.95 3.78 -89.81 -0.34 -2.29 16 12 C 0.04 0.97 4.65 -27.89 -0.13 0.84 16 13 C -0.51 -14.71 9.10 -34.44 -0.31 -15.02 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.13 -2.41 7.14 -25.91 -0.18 -2.60 16 22 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 23 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 24 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.12 1.22 6.30 -52.49 -0.33 0.89 16 26 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 27 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.13 1.68 6.66 -52.49 -0.35 1.33 16 29 H 0.10 2.07 6.91 -51.93 -0.36 1.71 16 30 H 0.07 1.10 6.31 -51.93 -0.33 0.77 16 31 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 32 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 33 H 0.02 0.56 7.40 -51.93 -0.38 0.17 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.07 1.09 7.72 -51.93 -0.40 0.69 16 LS Contribution 303.11 15.07 4.57 4.57 Total: -1.00 -31.56 303.11 -8.22 -39.78 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.44 Total: -0.92 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -2.88 Total: -28.89 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.64 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.18 Total: -4.87 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.56 -8.22 -39.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.417 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds