Wall clock time and date at job start Mon Mar 30 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00124 * 2 1 4 4 C 1.38749 * 120.05604 * 0.25409 * 3 2 1 5 5 C 1.38125 * 119.94618 * 180.32068 * 4 3 2 6 6 C 1.38290 * 120.05076 * 359.67829 * 5 4 3 7 7 C 1.38240 * 120.11431 * 0.02871 * 6 5 4 8 8 C 1.38169 * 120.05689 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.03102 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47097 * 265.00283 * 9 8 7 11 11 H 1.09008 * 115.55064 * 29.27666 * 10 9 8 12 12 C 1.53000 * 117.49920 * 243.60885 * 10 9 8 13 13 C 1.53002 * 60.02940 * 252.47484 * 12 10 9 14 14 H 1.08999 * 117.49664 * 252.51862 * 13 12 10 15 15 C 1.52999 * 117.49968 * 107.50530 * 13 12 10 16 16 C 1.50699 * 109.47531 * 116.38655 * 15 13 12 17 17 H 1.08000 * 119.99844 * 0.02562 * 16 15 13 18 18 C 1.37869 * 120.00037 * 179.97438 * 16 15 13 19 19 N 1.31520 * 120.00109 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46947 * 60.00490 * 20 18 16 22 22 H 1.48498 * 109.47439 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47441 * 300.00426 * 20 18 16 24 24 H 1.09000 * 109.47396 * 59.99701 * 1 2 3 25 25 H 1.09000 * 109.47355 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47134 * 299.99921 * 1 2 3 27 27 H 1.08000 * 120.03108 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.97491 * 179.70061 * 5 4 3 29 29 H 1.08009 * 119.94115 * 179.97438 * 6 5 4 30 30 H 1.08001 * 119.97732 * 180.02562 * 7 6 5 31 31 H 1.08995 * 109.46909 * 145.00087 * 9 8 7 32 32 H 1.08999 * 109.46673 * 25.00256 * 9 8 7 33 33 H 1.09002 * 117.49833 * 359.97438 * 12 10 9 34 34 H 1.09002 * 117.49953 * 144.97630 * 12 10 9 35 35 H 1.09007 * 109.46856 * 236.39135 * 15 13 12 36 36 H 1.09004 * 109.46879 * 356.38351 * 15 13 12 37 37 H 0.96997 * 119.99796 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0053 5 6 1.9209 3.6047 -0.0014 6 6 3.3020 3.6757 -0.0067 7 6 4.0560 2.5170 -0.0059 8 6 3.4312 1.2847 -0.0003 9 6 4.2537 0.0220 0.0000 10 6 4.4215 -0.4777 -1.4363 11 1 4.4109 0.2935 -2.2066 12 6 3.8104 -1.8356 -1.7878 13 6 5.3283 -1.6899 -1.6623 14 1 5.9140 -1.7159 -2.5812 15 6 5.9985 -2.3101 -0.4347 16 6 6.9381 -3.4034 -0.8737 17 1 7.0468 -3.6327 -1.9235 18 6 7.6598 -4.1101 0.0646 19 7 7.5279 -3.8305 1.3430 20 14 8.8251 -5.4649 -0.4796 21 1 9.8631 -4.8946 -1.3755 22 1 9.4754 -6.0668 0.7120 23 1 8.0628 -6.5106 -1.2080 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2129 2.3204 0.0099 28 1 1.3340 4.5114 -0.0021 29 1 3.7923 4.6380 -0.0123 30 1 5.1345 2.5750 -0.0096 31 1 3.7489 -0.7403 0.5933 32 1 5.2340 0.2271 0.4302 33 1 3.2893 -2.3732 -0.9956 34 1 3.3976 -1.9578 -2.7892 35 1 6.5584 -1.5427 0.1001 36 1 5.2364 -2.7283 0.2229 37 1 8.0354 -4.3280 2.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261013257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:16 Heat of formation + Delta-G solvation = -5.709590 kcal Electronic energy + Delta-G solvation = -17252.611475 eV Core-core repulsion = 14574.391269 eV Total energy + Delta-G solvation = -2678.220206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14553 -37.54630 -36.95760 -32.87772 -32.07165 -30.02953 -28.22634 -27.44949 -26.38675 -23.17339 -22.05098 -21.71422 -20.42489 -18.50530 -17.82098 -16.45949 -16.10240 -15.64862 -15.50137 -14.60767 -14.39393 -14.24493 -13.65572 -13.29380 -12.86027 -12.42611 -12.36642 -11.97784 -11.92074 -11.60183 -11.22419 -11.07938 -10.90793 -10.82021 -10.78139 -10.56608 -10.44510 -9.62414 -9.19919 -9.00129 -8.72630 -8.60843 -8.21464 -7.96119 -5.93130 -3.94345 1.41879 1.54281 3.37920 3.39166 3.41887 3.44702 3.85588 4.50627 4.69957 4.82063 4.89517 5.07432 5.11707 5.14944 5.38006 5.42203 5.45372 5.48466 5.66397 5.73548 5.83370 5.92744 5.96330 6.20325 6.31283 6.43888 6.48285 6.56974 6.57852 6.73217 6.87438 6.92913 7.04464 7.24353 7.52130 7.76798 7.88747 8.07004 8.51917 9.11310 9.68568 11.18107 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.034357 B = 0.004642 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.781962 B = 6030.775653 C = 6368.210714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.130 3.870 4 C -0.212 4.212 5 C -0.095 4.095 6 C -0.159 4.159 7 C -0.082 4.082 8 C -0.096 4.096 9 C -0.039 4.039 10 C -0.158 4.158 11 H 0.086 0.914 12 C -0.176 4.176 13 C -0.118 4.118 14 H 0.088 0.912 15 C 0.050 3.950 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.051 0.949 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.348 13.095 -2.297 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.085 3.915 4 C -0.231 4.231 5 C -0.113 4.113 6 C -0.177 4.177 7 C -0.100 4.100 8 C -0.096 4.096 9 C -0.076 4.076 10 C -0.176 4.176 11 H 0.105 0.895 12 C -0.213 4.213 13 C -0.136 4.136 14 H 0.107 0.893 15 C 0.013 3.987 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.070 0.930 25 H 0.117 0.883 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.208 12.835 -2.117 18.538 hybrid contribution 0.267 -0.551 -0.306 0.684 sum -12.940 12.284 -2.423 18.006 Atomic orbital electron populations 1.23018 0.79151 1.03798 1.00783 1.86192 1.20556 1.26533 1.88310 1.18905 0.91946 0.84162 0.96506 1.21172 0.99671 0.92514 1.09731 1.20829 0.94680 0.96670 0.99092 1.21009 0.93876 0.98263 1.04540 1.20993 1.00142 0.91013 0.97862 1.19490 0.90626 0.96416 1.03093 1.19968 0.98620 0.93048 0.95947 1.22194 1.08093 0.91227 0.96116 0.89549 1.22985 0.97877 0.99471 1.00982 1.22817 0.91005 0.97681 1.02098 0.89334 1.18721 0.94825 0.94760 0.90398 1.21231 1.23557 1.17507 0.93001 0.92777 1.25006 0.97129 0.97408 0.94940 1.69956 1.42053 1.41427 1.00217 0.86675 0.81189 0.82311 0.77912 1.20298 1.21355 1.20314 0.93017 0.88348 0.93052 0.85909 0.86348 0.86233 0.85264 0.90463 0.90486 0.89301 0.90735 0.96035 0.96258 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.30 -4.48 9.64 -19.42 -0.19 -4.67 16 3 C 0.13 1.93 6.66 -39.22 -0.26 1.67 16 4 C -0.21 -2.61 9.04 -39.43 -0.36 -2.96 16 5 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 6 C -0.16 -1.88 10.04 -39.56 -0.40 -2.28 16 7 C -0.08 -1.13 9.68 -39.61 -0.38 -1.51 16 8 C -0.10 -1.50 5.10 -104.47 -0.53 -2.04 16 9 C -0.04 -0.70 4.43 -27.89 -0.12 -0.82 16 10 C -0.16 -2.95 5.72 -90.59 -0.52 -3.46 16 11 H 0.09 1.52 8.07 -51.92 -0.42 1.10 16 12 C -0.18 -3.40 9.82 -26.73 -0.26 -3.66 16 13 C -0.12 -2.57 5.70 -90.58 -0.52 -3.09 16 14 H 0.09 1.92 8.00 -51.93 -0.42 1.51 16 15 C 0.05 1.31 4.34 -27.88 -0.12 1.19 16 16 C -0.51 -14.86 9.08 -34.44 -0.31 -15.18 16 17 H 0.05 1.52 7.68 -52.49 -0.40 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 27 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.08 1.51 7.43 -51.93 -0.39 1.12 16 32 H 0.08 1.43 7.51 -51.93 -0.39 1.04 16 33 H 0.09 1.78 7.92 -51.93 -0.41 1.37 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.60 7.61 -51.93 -0.39 0.20 16 36 H 0.02 0.54 7.88 -51.93 -0.41 0.13 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -31.47 311.19 -8.67 -40.15 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.60 Total: 0.22 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -3.29 Total: -30.82 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.54 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.19 Total: -4.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.47 -8.67 -40.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261013257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.438 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds