Wall clock time and date at job start Mon Mar 30 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32379 * 120.48860 * 2 1 4 4 C 1.31783 * 120.77268 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.09469 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46948 * 300.00157 * 5 4 3 7 7 C 1.52996 * 109.46865 * 60.00069 * 5 4 3 8 8 N 1.31796 * 121.81358 * 0.02562 * 4 3 2 9 9 C 1.32422 * 120.79978 * 359.97438 * 8 4 3 10 10 C 1.38454 * 118.99539 * 0.02562 * 9 8 4 11 11 C 1.51059 * 109.87185 * 179.97438 * 10 9 8 12 12 H 1.08997 * 110.38814 * 136.00902 * 11 10 9 13 13 C 1.50695 * 110.30354 * 258.12636 * 11 10 9 14 14 H 1.08004 * 120.00546 * 357.45742 * 13 11 10 15 15 C 1.37885 * 119.99721 * 177.17994 * 13 11 10 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46986 * 90.00256 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00273 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00102 * 17 15 13 21 21 C 1.54420 * 105.14752 * 17.04536 * 11 10 9 22 22 C 1.51176 * 131.30113 * 179.97438 * 9 8 4 23 23 H 1.09002 * 109.47240 * 270.02749 * 1 2 3 24 24 H 1.09003 * 109.46916 * 30.02211 * 1 2 3 25 25 H 1.09001 * 109.47681 * 150.01879 * 1 2 3 26 26 H 1.09000 * 109.47371 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.46894 * 59.99942 * 6 5 4 28 28 H 1.09003 * 109.46975 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46818 * 299.99989 * 6 5 4 30 30 H 1.08999 * 109.47588 * 60.00130 * 7 5 4 31 31 H 1.09001 * 109.47077 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.47348 * 299.99523 * 7 5 4 33 33 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 34 34 H 1.08998 * 110.81327 * 92.10890 * 21 11 10 35 35 H 1.09000 * 110.80483 * 215.42798 * 21 11 10 36 36 H 1.09001 * 110.30008 * 44.04791 * 22 9 8 37 37 H 1.08999 * 110.38009 * 281.94973 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1786 1.1408 0.0000 4 6 3.4964 1.1473 0.0005 5 6 4.2226 2.4677 0.0011 6 6 3.8369 3.2625 -1.2482 7 6 3.8360 3.2618 1.2503 8 7 4.1967 0.0308 0.0005 9 6 3.5934 -1.1480 0.0005 10 6 2.2096 -1.1938 0.0000 11 6 1.7434 -2.6306 -0.0005 12 1 0.9267 -2.7650 0.7088 13 6 1.3059 -3.0379 -1.3839 14 1 1.3177 -2.3171 -2.1881 15 6 0.8960 -4.3323 -1.6241 16 7 0.8864 -5.2113 -0.6459 17 14 0.3531 -4.8370 -3.3387 18 1 1.5261 -5.3301 -4.1043 19 1 -0.6620 -5.9163 -3.2388 20 1 -0.2365 -3.6660 -4.0361 21 6 2.9741 -3.4544 0.4367 22 6 4.1498 -2.5537 0.0001 23 1 -0.3634 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 5.2982 2.2909 0.0010 27 1 2.7613 3.4393 -1.2485 28 1 4.3625 4.2174 -1.2480 29 1 4.1123 2.6967 -2.1382 30 1 4.1107 2.6957 2.1403 31 1 4.3609 4.2171 1.2506 32 1 2.7604 3.4388 1.2500 33 1 0.5977 -6.1218 -0.8148 34 1 2.9785 -3.6006 1.5168 35 1 3.0030 -4.4125 -0.0823 36 1 4.9725 -2.6350 0.7105 37 1 4.4859 -2.8285 -0.9997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261018167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:09 Heat of formation + Delta-G solvation = 19.153701 kcal Electronic energy + Delta-G solvation = -18006.472585 eV Core-core repulsion = 15361.623284 eV Total energy + Delta-G solvation = -2644.849302 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.76394 -36.88246 -34.69495 -33.70170 -32.15899 -29.65646 -27.84013 -27.12624 -27.02241 -24.46604 -22.98317 -21.53523 -19.74142 -19.48862 -17.13980 -16.41316 -15.35088 -14.89584 -14.71305 -14.05539 -13.69665 -13.41339 -13.12606 -12.97928 -12.40957 -12.19208 -12.12449 -11.94119 -11.75229 -11.62957 -11.15696 -11.09678 -11.03539 -10.89567 -10.73495 -10.51279 -10.35166 -10.05591 -9.59315 -9.49588 -9.31454 -8.54802 -8.40736 -7.99792 -6.15457 -4.22531 1.73633 1.77752 3.22723 3.30299 3.33908 4.24745 4.28711 4.41912 4.58272 5.13892 5.19544 5.22875 5.33150 5.38357 5.57902 5.73946 5.74625 5.93551 5.95237 5.98357 6.03375 6.05792 6.09395 6.17398 6.35261 6.36191 6.44879 6.53667 6.59367 6.83414 6.95146 7.05693 7.21163 7.43320 7.62239 7.76188 7.85828 8.20743 8.78816 8.82621 9.42507 10.90962 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.006590 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.965453 B = 4247.578570 C = 4487.622395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.167 3.833 3 N -0.519 5.519 4 C 0.294 3.706 5 C -0.018 4.018 6 C -0.138 4.138 7 C -0.137 4.137 8 N -0.525 5.525 9 C 0.153 3.847 10 C -0.153 4.153 11 C 0.091 3.909 12 H 0.043 0.957 13 C -0.507 4.507 14 H 0.055 0.945 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.102 4.102 22 C -0.063 4.063 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.263 0.737 34 H 0.041 0.959 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 9.977 2.030 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.022 3.978 3 N -0.234 5.234 4 C 0.026 3.974 5 C -0.038 4.038 6 C -0.196 4.196 7 C -0.195 4.195 8 N -0.239 5.239 9 C 0.008 3.992 10 C -0.157 4.157 11 C 0.071 3.929 12 H 0.061 0.939 13 C -0.545 4.545 14 H 0.073 0.927 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.140 4.140 22 C -0.101 4.101 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.900 10.641 2.068 11.521 hybrid contribution -0.641 -1.165 -0.971 1.647 sum 3.260 9.476 1.097 10.081 Atomic orbital electron populations 1.20689 0.88461 1.03923 1.02635 1.21166 0.97187 0.87130 0.92308 1.67897 1.09452 1.30151 1.15947 1.22656 0.86782 0.93354 0.94631 1.19766 0.98935 0.88555 0.96584 1.21764 1.02466 0.98995 0.96375 1.21759 1.02463 0.99005 0.96321 1.67388 1.42637 0.98009 1.15881 1.22392 0.92276 0.93692 0.90860 1.22718 0.96161 0.99418 0.97420 1.18190 0.94294 0.82603 0.97780 0.93938 1.20887 1.44252 0.95704 0.93625 0.92676 1.24926 0.95250 0.96395 0.97028 1.69940 1.46896 1.04144 1.31295 0.86572 0.78584 0.78386 0.84429 1.20558 1.21037 1.19852 1.22339 0.93195 1.00067 0.98448 1.21064 0.99311 0.87562 1.02203 0.90920 0.91330 0.88833 0.89372 0.91599 0.92264 0.92986 0.93052 0.92263 0.91609 0.92669 0.94060 0.88284 0.91482 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 10.11 36.00 0.36 -1.38 16 2 C 0.17 3.44 6.82 -82.25 -0.56 2.88 16 3 N -0.52 -10.24 9.75 -7.00 -0.07 -10.31 16 4 C 0.29 5.63 6.34 -157.20 -1.00 4.63 16 5 C -0.02 -0.27 3.25 -91.77 -0.30 -0.56 16 6 C -0.14 -1.80 9.09 37.16 0.34 -1.46 16 7 C -0.14 -1.74 9.09 37.16 0.34 -1.40 16 8 N -0.52 -10.94 10.31 -6.86 -0.07 -11.01 16 9 C 0.15 3.33 7.38 -82.03 -0.60 2.72 16 10 C -0.15 -3.42 5.29 -104.26 -0.55 -3.97 16 11 C 0.09 2.17 2.32 -92.01 -0.21 1.95 16 12 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.51 -13.10 8.38 -34.44 -0.29 -13.39 16 14 H 0.05 1.47 7.76 -52.48 -0.41 1.06 16 15 C 0.07 1.72 5.10 -17.82 -0.09 1.63 16 16 N -0.88 -23.58 11.82 55.43 0.66 -22.92 16 17 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.10 -2.26 6.19 -25.25 -0.16 -2.42 16 22 C -0.06 -1.28 6.76 -26.91 -0.18 -1.46 16 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.09 1.76 7.60 -51.93 -0.39 1.36 16 26 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 2.39 6.42 -51.93 -0.33 2.06 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 304.49 15.07 4.59 4.59 Total: -1.00 -27.77 304.49 -8.57 -36.34 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.75 Total: 0.23 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.90 Total: -12.23 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.52 Total: -44.25 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.77 -8.57 -36.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.493 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds