Wall clock time and date at job start Mon Mar 30 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32379 * 120.48860 * 2 1 4 4 C 1.31783 * 120.77268 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.09469 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46948 * 300.00157 * 5 4 3 7 7 C 1.52996 * 109.46865 * 60.00069 * 5 4 3 8 8 N 1.31796 * 121.81358 * 0.02562 * 4 3 2 9 9 C 1.32422 * 120.79978 * 359.97438 * 8 4 3 10 10 C 1.38454 * 118.99539 * 0.02562 * 9 8 4 11 11 C 1.51059 * 109.87185 * 179.97438 * 10 9 8 12 12 H 1.08997 * 110.38814 * 136.00902 * 11 10 9 13 13 C 1.50695 * 110.30354 * 258.12636 * 11 10 9 14 14 H 1.08004 * 120.00546 * 357.45742 * 13 11 10 15 15 C 1.37885 * 119.99721 * 177.17994 * 13 11 10 16 16 N 1.31514 * 120.00035 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99853 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46986 * 90.00256 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00273 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00102 * 17 15 13 21 21 C 1.54420 * 105.14752 * 17.04536 * 11 10 9 22 22 C 1.51176 * 131.30113 * 179.97438 * 9 8 4 23 23 H 1.09002 * 109.47240 * 270.02749 * 1 2 3 24 24 H 1.09003 * 109.46916 * 30.02211 * 1 2 3 25 25 H 1.09001 * 109.47681 * 150.01879 * 1 2 3 26 26 H 1.09000 * 109.47371 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.46894 * 59.99942 * 6 5 4 28 28 H 1.09003 * 109.46975 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.46818 * 299.99989 * 6 5 4 30 30 H 1.08999 * 109.47588 * 60.00130 * 7 5 4 31 31 H 1.09001 * 109.47077 * 180.02562 * 7 5 4 32 32 H 1.09001 * 109.47348 * 299.99523 * 7 5 4 33 33 H 0.97000 * 119.99706 * 179.97438 * 16 15 13 34 34 H 1.08998 * 110.81327 * 92.10890 * 21 11 10 35 35 H 1.09000 * 110.80483 * 215.42798 * 21 11 10 36 36 H 1.09001 * 110.30008 * 44.04791 * 22 9 8 37 37 H 1.08999 * 110.38009 * 281.94973 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1786 1.1408 0.0000 4 6 3.4964 1.1473 0.0005 5 6 4.2226 2.4677 0.0011 6 6 3.8369 3.2625 -1.2482 7 6 3.8360 3.2618 1.2503 8 7 4.1967 0.0308 0.0005 9 6 3.5934 -1.1480 0.0005 10 6 2.2096 -1.1938 0.0000 11 6 1.7434 -2.6306 -0.0005 12 1 0.9267 -2.7650 0.7088 13 6 1.3059 -3.0379 -1.3839 14 1 1.3177 -2.3171 -2.1881 15 6 0.8960 -4.3323 -1.6241 16 7 0.8864 -5.2113 -0.6459 17 14 0.3531 -4.8370 -3.3387 18 1 1.5261 -5.3301 -4.1043 19 1 -0.6620 -5.9163 -3.2388 20 1 -0.2365 -3.6660 -4.0361 21 6 2.9741 -3.4544 0.4367 22 6 4.1498 -2.5537 0.0001 23 1 -0.3634 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 5.2982 2.2909 0.0010 27 1 2.7613 3.4393 -1.2485 28 1 4.3625 4.2174 -1.2480 29 1 4.1123 2.6967 -2.1382 30 1 4.1107 2.6957 2.1403 31 1 4.3609 4.2171 1.2506 32 1 2.7604 3.4388 1.2500 33 1 0.5977 -6.1218 -0.8148 34 1 2.9785 -3.6006 1.5168 35 1 3.0030 -4.4125 -0.0823 36 1 4.9725 -2.6350 0.7105 37 1 4.4859 -2.8285 -0.9997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261018167.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:09 Heat of formation + Delta-G solvation = 5.114649 kcal Electronic energy + Delta-G solvation = -18007.081364 eV Core-core repulsion = 15361.623284 eV Total energy + Delta-G solvation = -2645.458081 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.35071 -38.47328 -36.06849 -35.32835 -33.99156 -31.20137 -29.62950 -28.69592 -28.02654 -26.30834 -24.47826 -23.13826 -21.29412 -21.04652 -18.73633 -18.35994 -16.82560 -16.64791 -16.34745 -15.36260 -15.17507 -15.01648 -14.62656 -14.34061 -14.06503 -13.75473 -13.49799 -13.26935 -13.11831 -13.02686 -12.89110 -12.83701 -12.62247 -12.14464 -12.11610 -12.08926 -11.85592 -11.83059 -11.37441 -11.20010 -11.01740 -10.48820 -10.05260 -9.69541 -8.14578 -6.27679 0.13287 0.14809 1.40606 1.43562 1.51969 2.40914 2.80774 2.82140 3.08641 3.14209 3.70211 3.90391 3.99211 4.08702 4.23215 4.26457 4.38961 4.47093 4.66168 4.72073 4.79637 4.83371 4.85064 4.88705 4.96527 5.03652 5.09888 5.16299 5.25610 5.26585 5.34702 5.44797 5.50281 5.64971 5.75351 5.79816 6.20246 6.25830 6.76386 7.24205 7.39738 8.90983 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.006590 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.965453 B = 4247.578570 C = 4487.622395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.161 3.839 3 N -0.520 5.520 4 C 0.292 3.708 5 C -0.021 4.021 6 C -0.132 4.132 7 C -0.131 4.131 8 N -0.536 5.536 9 C 0.144 3.856 10 C -0.184 4.184 11 C 0.093 3.907 12 H 0.017 0.983 13 C -0.516 4.516 14 H 0.040 0.960 15 C 0.028 3.972 16 N -0.907 5.907 17 Si 0.948 3.052 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.274 1.274 21 C -0.096 4.096 22 C -0.055 4.055 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.265 0.735 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 11.665 1.791 12.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.016 3.984 3 N -0.235 5.235 4 C 0.024 3.976 5 C -0.041 4.041 6 C -0.190 4.190 7 C -0.189 4.189 8 N -0.251 5.251 9 C -0.001 4.001 10 C -0.188 4.188 11 C 0.074 3.926 12 H 0.035 0.965 13 C -0.554 4.554 14 H 0.059 0.941 15 C -0.172 4.172 16 N -0.546 5.546 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.199 1.199 21 C -0.135 4.135 22 C -0.093 4.093 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.542 12.334 1.830 13.270 hybrid contribution -0.833 -1.609 -0.869 2.010 sum 3.709 10.725 0.961 11.388 Atomic orbital electron populations 1.20689 0.86695 1.03933 1.03821 1.21632 0.98618 0.87002 0.91112 1.68048 1.09776 1.29313 1.16340 1.23696 0.86997 0.94632 0.92271 1.20034 0.98895 0.86731 0.98472 1.21739 1.02320 1.00132 0.94799 1.21727 1.02336 1.00087 0.94704 1.67514 1.42745 0.98082 1.16791 1.22596 0.92255 0.94570 0.90674 1.22650 0.96825 0.99078 1.00204 1.18024 0.94102 0.84293 0.96231 0.96479 1.20997 1.44556 0.95651 0.94228 0.94133 1.25535 0.95290 0.96351 1.00066 1.70026 1.47410 1.04355 1.32758 0.85702 0.78256 0.77931 0.80679 1.20196 1.20469 1.19915 1.22172 0.93596 0.99170 0.98557 1.20982 0.99059 0.86447 1.02815 0.89075 0.89350 0.90615 0.88528 0.92463 0.88787 0.94225 0.93848 0.88883 0.92422 0.92535 0.93354 0.90417 0.88876 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.26 10.11 71.23 0.72 -2.54 16 2 C 0.16 6.62 6.82 42.54 0.29 6.92 16 3 N -0.52 -19.96 9.75 -176.06 -1.72 -21.68 16 4 C 0.29 10.79 6.34 138.75 0.88 11.67 16 5 C -0.02 -0.57 3.25 -11.54 -0.04 -0.61 16 6 C -0.13 -3.08 9.09 71.98 0.65 -2.42 16 7 C -0.13 -2.93 9.09 71.98 0.65 -2.27 16 8 N -0.54 -21.88 10.31 -175.61 -1.81 -23.69 16 9 C 0.14 6.23 7.38 42.67 0.31 6.55 16 10 C -0.18 -8.28 5.29 -19.63 -0.10 -8.38 16 11 C 0.09 4.56 2.32 -11.69 -0.03 4.53 16 12 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 13 C -0.52 -27.29 8.38 25.60 0.21 -27.08 16 14 H 0.04 2.21 7.76 -2.91 -0.02 2.19 16 15 C 0.03 1.46 5.10 84.66 0.43 1.89 16 16 N -0.91 -49.05 11.82 21.45 0.25 -48.80 16 17 Si 0.95 41.95 29.54 68.60 2.03 43.97 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C -0.10 -4.35 6.19 31.56 0.20 -4.16 16 22 C -0.06 -2.21 6.76 30.48 0.21 -2.00 16 23 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 24 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.07 2.90 7.60 -2.39 -0.02 2.88 16 26 H 0.10 2.46 8.10 -2.39 -0.02 2.44 16 27 H 0.06 1.44 8.01 -2.39 -0.02 1.42 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.39 8.01 -2.39 -0.02 1.37 16 33 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 3.84 6.42 -2.39 -0.02 3.82 16 36 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -59.38 304.49 4.19 -55.19 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 1.04 Total: 12.91 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.39 Total: -17.90 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -3.27 Total: -94.17 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -59.38 4.19 -55.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018167.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.303 kcal (2) G-P(sol) polarization free energy of solvation -59.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds