Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00247 * 2 1 4 4 C 1.38731 * 120.05338 * 359.72445 * 3 2 1 5 5 C 1.38146 * 119.94125 * 179.69580 * 4 3 2 6 6 C 1.38269 * 120.05661 * 0.60053 * 5 4 3 7 7 C 1.50702 * 119.94379 * 179.69564 * 6 5 4 8 8 H 1.08999 * 110.01452 * 180.02562 * 7 6 5 9 9 C 1.54266 * 110.03185 * 301.43056 * 7 6 5 10 10 C 1.54891 * 104.19162 * 142.89616 * 9 7 6 11 11 C 1.54892 * 102.74892 * 322.05605 * 10 9 7 12 12 C 1.53868 * 110.03043 * 58.60186 * 7 6 5 13 13 H 1.09004 * 110.03633 * 359.97438 * 12 7 6 14 14 C 1.50699 * 110.03448 * 121.42788 * 12 7 6 15 15 H 1.08002 * 119.99648 * 28.61912 * 14 12 7 16 16 C 1.37873 * 120.00335 * 208.61809 * 14 12 7 17 17 N 1.31516 * 120.00374 * 179.81329 * 16 14 12 18 18 Si 1.86809 * 119.99876 * 359.81056 * 16 14 12 19 19 H 1.48496 * 109.46930 * 84.70106 * 18 16 14 20 20 H 1.48498 * 109.46857 * 204.70296 * 18 16 14 21 21 H 1.48496 * 109.46820 * 324.70088 * 18 16 14 22 22 C 1.38263 * 120.10999 * 359.67535 * 6 5 4 23 23 C 1.38149 * 120.05529 * 0.02643 * 22 6 5 24 24 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46474 * 59.99802 * 1 2 3 26 26 H 1.09000 * 109.47364 * 300.00430 * 1 2 3 27 27 H 1.07994 * 120.02943 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.97265 * 180.31881 * 5 4 3 29 29 H 1.08996 * 110.48919 * 261.57364 * 9 7 6 30 30 H 1.08996 * 110.48537 * 24.08898 * 9 7 6 31 31 H 1.08999 * 110.75423 * 80.37452 * 10 9 7 32 32 H 1.08998 * 110.75512 * 203.55761 * 10 9 7 33 33 H 1.09003 * 110.48287 * 156.61844 * 11 10 9 34 34 H 1.08997 * 110.48998 * 279.13425 * 11 10 9 35 35 H 0.96999 * 120.00428 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.97372 * 179.97438 * 22 6 5 37 37 H 1.08001 * 120.02567 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3751 -0.0058 5 6 1.9212 3.6047 0.0006 6 6 3.3021 3.6758 0.0002 7 6 3.9862 5.0185 0.0002 8 1 5.0681 4.8860 -0.0006 9 6 3.5523 5.8327 -1.2362 10 6 3.4585 7.2893 -0.7179 11 6 2.8738 7.1088 0.7050 12 6 3.5548 5.8298 1.2344 13 1 2.8503 5.2526 1.8332 14 6 4.7613 6.1920 2.0617 15 1 5.7243 6.3125 1.5880 16 6 4.6356 6.3695 3.4231 17 7 5.6892 6.6819 4.1456 18 14 2.9687 6.1662 4.2416 19 1 2.7378 4.7309 4.5446 20 1 2.9377 6.9496 5.5027 21 1 1.9057 6.6565 3.3280 22 6 4.0562 2.5169 0.0002 23 6 3.4314 1.2848 0.0000 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 0.2131 2.3202 -0.0107 28 1 1.3344 4.5114 0.0013 29 1 4.3004 5.7560 -2.0252 30 1 2.5823 5.4908 -1.5969 31 1 4.4462 7.7482 -0.6744 32 1 2.7874 7.8790 -1.3424 33 1 3.1267 7.9634 1.3326 34 1 1.7928 6.9768 0.6594 35 1 5.6007 6.8072 5.1034 36 1 5.1346 2.5749 -0.0006 37 1 4.0209 0.3799 0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = -32.572828 kcal Electronic energy + Delta-G solvation = -17840.941308 eV Core-core repulsion = 15161.556224 eV Total energy + Delta-G solvation = -2679.385083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97338 -38.29498 -36.23618 -32.38870 -30.81021 -30.59779 -28.70530 -27.70694 -26.18483 -23.78189 -22.50355 -21.29099 -19.82103 -18.54505 -17.94353 -16.87871 -15.91669 -15.63433 -15.19161 -14.67966 -14.35751 -13.69112 -13.51767 -13.19971 -13.10662 -12.65897 -12.40757 -12.10365 -11.95071 -11.65610 -11.15411 -10.99965 -10.70188 -10.62057 -10.26209 -10.13961 -10.10101 -9.82210 -9.67235 -9.46616 -8.90568 -8.64130 -8.50520 -7.64564 -6.03476 -4.00632 1.68701 1.80110 3.32432 3.39944 3.40569 3.42868 4.11903 4.46638 4.96696 5.11071 5.12447 5.19898 5.23406 5.35087 5.40616 5.56378 5.63878 5.72920 5.80130 5.88892 6.01630 6.25277 6.31593 6.38522 6.50685 6.52669 6.60289 6.62327 6.73137 6.77280 6.97930 7.04161 7.09155 7.20398 7.38672 7.46686 7.62348 7.85724 8.58209 9.01566 9.60650 11.09911 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.007369 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.985229 B = 3798.917593 C = 4305.733615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.104 3.896 4 C -0.207 4.207 5 C -0.081 4.081 6 C -0.081 4.081 7 C -0.046 4.046 8 H 0.080 0.920 9 C -0.114 4.114 10 C -0.116 4.116 11 C -0.122 4.122 12 C 0.023 3.977 13 H 0.031 0.969 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.872 3.128 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.264 1.264 22 C -0.080 4.080 23 C -0.150 4.150 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.545 -8.356 -9.803 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.059 3.941 4 C -0.226 4.226 5 C -0.099 4.099 6 C -0.081 4.081 7 C -0.064 4.064 8 H 0.098 0.902 9 C -0.151 4.151 10 C -0.154 4.154 11 C -0.161 4.161 12 C 0.004 3.996 13 H 0.049 0.951 14 C -0.540 4.540 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.542 5.542 18 Si 0.699 3.301 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.188 1.188 22 C -0.098 4.098 23 C -0.169 4.169 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.397 -8.508 -9.605 15.905 hybrid contribution -1.141 0.028 0.715 1.347 sum -10.539 -8.480 -8.890 16.187 Atomic orbital electron populations 1.22966 0.79071 1.03311 1.01210 1.86019 1.20855 1.27462 1.89419 1.18939 0.92364 0.83772 0.98990 1.21135 0.99440 0.92511 1.09532 1.20827 0.94521 0.96651 0.97879 1.20113 0.93262 0.95849 0.98872 1.20990 0.99563 0.90047 0.95816 0.90172 1.22454 0.99995 0.95836 0.96850 1.22385 1.00668 0.95589 0.96754 1.22735 0.96848 1.01012 0.95459 1.19783 0.96179 0.91198 0.92483 0.95053 1.21052 0.94604 1.46600 0.91750 0.90888 1.25019 0.96055 0.94613 0.97377 1.69897 1.29147 1.48614 1.06506 0.86934 0.85719 0.78475 0.78933 1.20280 1.21742 1.18839 1.20972 1.00053 0.90910 0.97857 1.20360 0.91171 0.98495 1.06869 0.88721 0.92958 0.92868 0.86137 0.85955 0.92802 0.92524 0.91554 0.93428 0.91871 0.94769 0.92784 0.85302 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.61 10.50 -19.43 -0.20 -4.81 16 3 C 0.10 1.64 6.69 -39.22 -0.26 1.37 16 4 C -0.21 -3.19 9.04 -39.43 -0.36 -3.54 16 5 C -0.08 -1.37 8.07 -39.60 -0.32 -1.69 16 6 C -0.08 -1.47 4.69 -104.60 -0.49 -1.96 16 7 C -0.05 -0.89 2.78 -90.66 -0.25 -1.15 16 8 H 0.08 1.66 7.32 -51.93 -0.38 1.28 16 9 C -0.11 -1.92 6.27 -25.07 -0.16 -2.08 16 10 C -0.12 -2.06 6.91 -24.74 -0.17 -2.23 16 11 C -0.12 -2.53 5.90 -25.07 -0.15 -2.68 16 12 C 0.02 0.52 1.79 -90.66 -0.16 0.35 16 13 H 0.03 0.75 4.99 -51.93 -0.26 0.49 16 14 C -0.50 -13.78 8.59 -34.44 -0.30 -14.08 16 15 H 0.07 2.17 7.88 -52.49 -0.41 1.75 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 18 Si 0.87 21.84 26.74 -169.99 -4.55 17.30 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.28 6.81 56.52 0.39 -5.90 16 22 C -0.08 -1.36 9.67 -39.60 -0.38 -1.74 16 23 C -0.15 -2.40 9.99 -39.43 -0.39 -2.79 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 27 H 0.12 1.53 6.30 -52.49 -0.33 1.20 16 28 H 0.12 1.98 7.81 -52.49 -0.41 1.57 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.89 6.95 -51.93 -0.36 0.52 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.41 7.83 -51.93 -0.41 1.00 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.13 2.02 7.96 -52.49 -0.42 1.61 16 37 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -30.58 297.33 -7.46 -38.03 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.46 Total: 0.83 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -2.50 Total: -29.01 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: 0.77 Total: -26.82 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.20 Total: -4.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.55 Total: 17.30 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.58 -7.46 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.460 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds