Wall clock time and date at job start Mon Mar 30 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00247 * 2 1 4 4 C 1.38731 * 120.05338 * 359.72445 * 3 2 1 5 5 C 1.38146 * 119.94125 * 179.69580 * 4 3 2 6 6 C 1.38269 * 120.05661 * 0.60053 * 5 4 3 7 7 C 1.50702 * 119.94379 * 179.69564 * 6 5 4 8 8 H 1.08999 * 110.01452 * 180.02562 * 7 6 5 9 9 C 1.54266 * 110.03185 * 301.43056 * 7 6 5 10 10 C 1.54891 * 104.19162 * 142.89616 * 9 7 6 11 11 C 1.54892 * 102.74892 * 322.05605 * 10 9 7 12 12 C 1.53868 * 110.03043 * 58.60186 * 7 6 5 13 13 H 1.09004 * 110.03633 * 359.97438 * 12 7 6 14 14 C 1.50699 * 110.03448 * 121.42788 * 12 7 6 15 15 H 1.08002 * 119.99648 * 28.61912 * 14 12 7 16 16 C 1.37873 * 120.00335 * 208.61809 * 14 12 7 17 17 N 1.31516 * 120.00374 * 179.81329 * 16 14 12 18 18 Si 1.86809 * 119.99876 * 359.81056 * 16 14 12 19 19 H 1.48496 * 109.46930 * 84.70106 * 18 16 14 20 20 H 1.48498 * 109.46857 * 204.70296 * 18 16 14 21 21 H 1.48496 * 109.46820 * 324.70088 * 18 16 14 22 22 C 1.38263 * 120.10999 * 359.67535 * 6 5 4 23 23 C 1.38149 * 120.05529 * 0.02643 * 22 6 5 24 24 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46474 * 59.99802 * 1 2 3 26 26 H 1.09000 * 109.47364 * 300.00430 * 1 2 3 27 27 H 1.07994 * 120.02943 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.97265 * 180.31881 * 5 4 3 29 29 H 1.08996 * 110.48919 * 261.57364 * 9 7 6 30 30 H 1.08996 * 110.48537 * 24.08898 * 9 7 6 31 31 H 1.08999 * 110.75423 * 80.37452 * 10 9 7 32 32 H 1.08998 * 110.75512 * 203.55761 * 10 9 7 33 33 H 1.09003 * 110.48287 * 156.61844 * 11 10 9 34 34 H 1.08997 * 110.48998 * 279.13425 * 11 10 9 35 35 H 0.96999 * 120.00428 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.97372 * 179.97438 * 22 6 5 37 37 H 1.08001 * 120.02567 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2916 2.3751 -0.0058 5 6 1.9212 3.6047 0.0006 6 6 3.3021 3.6758 0.0002 7 6 3.9862 5.0185 0.0002 8 1 5.0681 4.8860 -0.0006 9 6 3.5523 5.8327 -1.2362 10 6 3.4585 7.2893 -0.7179 11 6 2.8738 7.1088 0.7050 12 6 3.5548 5.8298 1.2344 13 1 2.8503 5.2526 1.8332 14 6 4.7613 6.1920 2.0617 15 1 5.7243 6.3125 1.5880 16 6 4.6356 6.3695 3.4231 17 7 5.6892 6.6819 4.1456 18 14 2.9687 6.1662 4.2416 19 1 2.7378 4.7309 4.5446 20 1 2.9377 6.9496 5.5027 21 1 1.9057 6.6565 3.3280 22 6 4.0562 2.5169 0.0002 23 6 3.4314 1.2848 0.0000 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8899 27 1 0.2131 2.3202 -0.0107 28 1 1.3344 4.5114 0.0013 29 1 4.3004 5.7560 -2.0252 30 1 2.5823 5.4908 -1.5969 31 1 4.4462 7.7482 -0.6744 32 1 2.7874 7.8790 -1.3424 33 1 3.1267 7.9634 1.3326 34 1 1.7928 6.9768 0.6594 35 1 5.6007 6.8072 5.1034 36 1 5.1346 2.5749 -0.0006 37 1 4.0209 0.3799 0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:09 Heat of formation + Delta-G solvation = -49.695089 kcal Electronic energy + Delta-G solvation = -17841.683785 eV Core-core repulsion = 15161.556224 eV Total energy + Delta-G solvation = -2680.127560 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17169 -39.63872 -37.57456 -34.51543 -32.05585 -31.87935 -30.52378 -28.75179 -27.44553 -25.65948 -23.74836 -22.58098 -21.35833 -20.16860 -19.09669 -18.83769 -17.17028 -16.70930 -16.58386 -16.36345 -15.61826 -15.38577 -14.77107 -14.55961 -14.51633 -14.31740 -13.77529 -13.66812 -13.27337 -12.98063 -12.75064 -12.41875 -12.29881 -11.88382 -11.83255 -11.71336 -11.60405 -11.46345 -11.24352 -11.19508 -10.83976 -10.66989 -9.88387 -8.90682 -8.25565 -6.25476 0.45074 0.53876 1.33343 1.33909 1.45120 2.36508 2.43027 2.85592 3.10640 3.87793 3.93169 4.01328 4.08312 4.14579 4.36741 4.41905 4.43647 4.54730 4.59363 4.71839 4.76855 4.82644 4.89218 4.99749 5.01631 5.08954 5.14665 5.24464 5.33792 5.37491 5.44989 5.52258 5.66444 5.69170 5.80968 5.91623 5.94876 6.39129 6.51337 6.80818 7.38260 8.91594 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.007369 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.985229 B = 3798.917593 C = 4305.733615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.103 3.897 4 C -0.205 4.205 5 C -0.087 4.087 6 C -0.104 4.104 7 C -0.042 4.042 8 H 0.054 0.946 9 C -0.104 4.104 10 C -0.112 4.112 11 C -0.123 4.123 12 C 0.019 3.981 13 H 0.025 0.975 14 C -0.498 4.498 15 H 0.031 0.969 16 C 0.009 3.991 17 N -0.954 5.954 18 Si 0.933 3.067 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.239 1.239 22 C -0.093 4.093 23 C -0.159 4.159 24 H 0.120 0.880 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.151 0.849 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 -9.363 -11.148 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.058 3.942 4 C -0.223 4.223 5 C -0.105 4.105 6 C -0.104 4.104 7 C -0.061 4.061 8 H 0.072 0.928 9 C -0.142 4.142 10 C -0.149 4.149 11 C -0.161 4.161 12 C 0.000 4.000 13 H 0.043 0.957 14 C -0.536 4.536 15 H 0.050 0.950 16 C -0.187 4.187 17 N -0.595 5.595 18 Si 0.757 3.243 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.162 1.162 22 C -0.111 4.111 23 C -0.178 4.178 24 H 0.138 0.862 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.711 -9.519 -10.980 19.306 hybrid contribution -0.078 0.244 1.087 1.117 sum -12.788 -9.275 -9.893 18.640 Atomic orbital electron populations 1.23323 0.76672 1.05478 1.02122 1.86017 1.23332 1.26639 1.89041 1.19092 0.92434 0.84679 0.97950 1.21417 1.00977 0.91615 1.08284 1.20963 0.93847 0.97802 0.97840 1.20047 0.94189 0.95068 1.01105 1.20792 0.98258 0.91295 0.95749 0.92790 1.22415 1.01508 0.94440 0.95819 1.22360 1.00358 0.96660 0.95529 1.22639 0.98264 0.98502 0.96723 1.19779 0.94059 0.92893 0.93242 0.95666 1.21361 0.94899 1.45105 0.92272 0.95039 1.25856 0.99771 0.94816 0.98219 1.70053 1.31635 1.51065 1.06794 0.85946 0.81792 0.78380 0.78158 1.20109 1.21693 1.16238 1.21066 1.00263 0.91395 0.98407 1.20549 0.91998 0.98519 1.06711 0.86157 0.91561 0.92302 0.83159 0.84950 0.91397 0.90340 0.93267 0.90007 0.94216 0.92196 0.92874 0.85407 0.84381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.59 10.50 -92.46 -0.97 -9.56 16 3 C 0.10 3.00 6.69 22.51 0.15 3.15 16 4 C -0.20 -5.60 9.04 22.37 0.20 -5.40 16 5 C -0.09 -2.70 8.07 22.26 0.18 -2.52 16 6 C -0.10 -3.68 4.69 -19.85 -0.09 -3.77 16 7 C -0.04 -1.65 2.78 -10.82 -0.03 -1.68 16 8 H 0.05 2.33 7.32 -2.39 -0.02 2.31 16 9 C -0.10 -3.29 6.27 31.67 0.20 -3.09 16 10 C -0.11 -3.72 6.91 31.89 0.22 -3.50 16 11 C -0.12 -4.88 5.90 31.67 0.19 -4.70 16 12 C 0.02 0.87 1.79 -10.82 -0.02 0.85 16 13 H 0.03 1.17 4.99 -2.39 -0.01 1.16 16 14 C -0.50 -28.37 8.59 25.60 0.22 -28.15 16 15 H 0.03 1.99 7.88 -2.91 -0.02 1.97 16 16 C 0.01 0.55 5.47 84.65 0.46 1.01 16 17 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 18 Si 0.93 45.27 26.74 68.60 1.83 47.11 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 21 H -0.24 -10.55 6.81 99.48 0.68 -9.88 16 22 C -0.09 -3.15 9.67 22.25 0.22 -2.94 16 23 C -0.16 -4.88 9.99 22.37 0.22 -4.66 16 24 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 25 H 0.07 0.89 7.65 -2.38 -0.02 0.87 16 26 H 0.06 0.89 7.67 -2.39 -0.02 0.87 16 27 H 0.15 3.12 6.30 -2.91 -0.02 3.11 16 28 H 0.13 3.79 7.81 -2.91 -0.02 3.77 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.08 2.16 6.95 -2.39 -0.02 2.14 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.73 7.83 -2.39 -0.02 1.71 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.13 4.16 7.96 -2.91 -0.02 4.13 16 37 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -67.97 297.33 5.40 -62.57 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.01 Total: 14.25 kcal Atomic # 6 Polarization: -57.20 SS G_CDS: 3.23 Total: -53.97 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.30 Total: -60.39 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.97 Total: -9.56 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.83 Total: 47.11 kcal Total: -67.97 5.40 -62.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.871 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds