Wall clock time and date at job start Mon Mar 30 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47194 * 119.99575 * 2 1 3 5 5 H 1.08994 * 109.47659 * 295.90514 * 4 2 1 6 6 C 1.50697 * 109.46913 * 175.90461 * 4 2 1 7 7 H 1.08004 * 120.00740 * 305.57112 * 6 4 2 8 8 C 1.37887 * 119.99843 * 125.56882 * 6 4 2 9 9 N 1.31519 * 119.99727 * 186.09204 * 8 6 4 10 10 Si 1.86791 * 120.00067 * 6.09072 * 8 6 4 11 11 H 1.48500 * 109.47356 * 265.99069 * 10 8 6 12 12 H 1.48497 * 109.47514 * 145.98859 * 10 8 6 13 13 H 1.48506 * 109.47055 * 25.98860 * 10 8 6 14 14 C 1.50699 * 109.46849 * 55.90863 * 4 2 1 15 15 C 1.38264 * 119.98202 * 60.00132 * 14 4 2 16 16 C 1.38287 * 120.04470 * 179.97438 * 15 14 4 17 17 C 1.37968 * 119.91913 * 359.97438 * 16 15 14 18 18 C 1.38596 * 120.03882 * 0.02562 * 17 16 15 19 19 C 1.37963 * 120.04103 * 359.74961 * 18 17 16 20 20 C 1.51081 * 107.27401 * 179.97438 * 18 17 16 21 21 O 1.43946 * 105.95947 * 342.31428 * 20 18 17 22 22 C 1.43946 * 104.94526 * 28.44285 * 21 20 18 23 23 H 1.09000 * 109.47510 * 299.99687 * 1 2 3 24 24 H 1.08998 * 109.47455 * 59.99811 * 1 2 3 25 25 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47220 * 240.00437 * 2 1 3 27 27 H 1.08997 * 109.47329 * 185.07740 * 3 2 1 28 28 H 1.09008 * 109.47007 * 305.07458 * 3 2 1 29 29 H 1.09001 * 109.47222 * 65.07379 * 3 2 1 30 30 H 0.96993 * 119.99767 * 180.02562 * 9 8 6 31 31 H 1.08004 * 119.97664 * 359.97438 * 15 14 4 32 32 H 1.08005 * 120.04207 * 180.02562 * 16 15 14 33 33 H 1.07996 * 120.04511 * 180.27978 * 19 18 17 34 34 H 1.09005 * 110.15763 * 223.19090 * 20 18 17 35 35 H 1.08999 * 110.21619 * 101.46725 * 20 18 17 36 36 H 1.09000 * 110.15461 * 212.43343 * 22 21 20 37 37 H 1.09001 * 110.21398 * 90.70859 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.7379 -0.1667 2.1377 6 6 3.5435 -0.8096 1.1995 7 1 4.0307 -1.2468 0.3405 8 6 4.2974 -0.3322 2.2508 9 7 5.6088 -0.2990 2.1577 10 14 3.4559 0.2673 3.8069 11 1 3.2497 1.7355 3.7240 12 1 4.3069 -0.0474 4.9825 13 1 2.1421 -0.4097 3.9515 14 6 1.4566 -2.1096 1.3010 15 6 1.7052 -3.0023 0.2748 16 6 1.1709 -4.2769 0.3213 17 6 0.3898 -4.6570 1.3932 18 6 0.1405 -3.7623 2.4218 19 6 0.6774 -2.4922 2.3777 20 6 -0.7341 -4.4702 3.4300 21 8 -1.2950 -5.6028 2.7412 22 6 -0.3234 -5.9442 1.7355 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 3.1261 1.4440 -0.0909 28 1 1.6042 1.9820 -0.8411 29 1 1.7527 1.9295 0.9319 30 1 6.1391 0.0364 2.8973 31 1 2.3172 -2.7038 -0.5636 32 1 1.3656 -4.9743 -0.4801 33 1 0.4869 -1.7964 3.1814 34 1 -1.5288 -3.8060 3.7698 35 1 -0.1365 -4.8046 4.2780 36 1 -0.8217 -6.3439 0.8522 37 1 0.3853 -6.6732 2.1286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261030714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:36 Heat of formation + Delta-G solvation = -32.271179 kcal Electronic energy + Delta-G solvation = -18072.917144 eV Core-core repulsion = 15393.545141 eV Total energy + Delta-G solvation = -2679.372003 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.27726 -37.80318 -35.38359 -32.35770 -31.16616 -30.89914 -28.24150 -27.21229 -26.22890 -24.09756 -22.58806 -21.38600 -20.61848 -18.59936 -17.08256 -16.19770 -16.01848 -15.62156 -14.85182 -14.52063 -13.93600 -13.58462 -13.43168 -12.98061 -12.81302 -12.50270 -12.44827 -12.21571 -11.84454 -11.76042 -11.50552 -11.30099 -10.98339 -10.59317 -10.51436 -10.21880 -10.05976 -9.87112 -9.74240 -9.48149 -9.10116 -8.62461 -8.28704 -7.71945 -6.17512 -4.15336 1.84556 1.93177 3.21303 3.29704 3.31177 4.10487 4.26926 4.33711 4.60712 4.97615 5.15152 5.33741 5.52087 5.55134 5.58878 5.68697 5.73406 5.82277 5.83856 5.97448 6.09610 6.18847 6.25703 6.38957 6.50750 6.52234 6.56367 6.61307 6.68941 6.75348 6.96115 7.03868 7.11185 7.15679 7.25221 7.44809 7.58776 7.66670 8.41566 8.87161 9.44818 10.95145 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022637 B = 0.008001 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.631211 B = 3498.770069 C = 3905.468119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.133 4.133 4 C 0.045 3.955 5 H 0.046 0.954 6 C -0.498 4.498 7 H 0.077 0.923 8 C 0.075 3.925 9 N -0.894 5.894 10 Si 0.869 3.131 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.261 1.261 14 C -0.017 4.017 15 C -0.104 4.104 16 C -0.094 4.094 17 C -0.168 4.168 18 C -0.136 4.136 19 C -0.110 4.110 20 C 0.094 3.906 21 O -0.369 6.369 22 C 0.098 3.902 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 -4.783 -1.143 11.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.190 4.190 4 C 0.026 3.974 5 H 0.064 0.936 6 C -0.536 4.536 7 H 0.095 0.905 8 C -0.127 4.127 9 N -0.531 5.531 10 Si 0.697 3.303 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.186 1.186 14 C -0.017 4.017 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.168 4.168 18 C -0.136 4.136 19 C -0.128 4.128 20 C 0.018 3.982 21 O -0.288 6.288 22 C 0.022 3.978 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.560 -4.838 -0.992 11.658 hybrid contribution 0.053 0.374 0.972 1.043 sum -10.507 -4.464 -0.020 11.416 Atomic orbital electron populations 1.21948 0.97533 1.00868 1.00234 1.21161 0.92745 0.96425 0.99539 1.21677 1.02527 0.95516 0.99266 1.18535 0.96296 0.87675 0.94926 0.93590 1.20849 0.87481 1.39947 1.05279 0.90533 1.25059 0.94673 0.94909 0.98098 1.69893 1.04701 1.46306 1.32243 0.86969 0.80078 0.79519 0.83779 1.20149 1.21459 1.18607 1.20654 0.90523 0.98906 0.91622 1.20948 0.99187 0.92499 0.99607 1.20289 0.97714 0.96491 0.96743 1.20717 1.02709 0.96181 0.97177 1.20839 1.00787 0.95315 0.96689 1.20349 0.99013 0.94260 0.99219 1.21671 0.96083 0.86974 0.93512 1.89001 1.42534 1.48224 1.49046 1.21608 0.90496 0.94104 0.91615 0.93621 0.93998 0.93197 0.92031 0.91196 0.94731 0.94107 0.92554 0.85703 0.86775 0.86788 0.89149 0.91115 0.89364 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.89 37.16 0.33 -2.14 16 2 C -0.08 -1.53 2.26 -90.62 -0.20 -1.73 16 3 C -0.13 -2.49 8.91 37.16 0.33 -2.16 16 4 C 0.04 0.97 1.48 -92.93 -0.14 0.84 16 5 H 0.05 1.04 4.38 -51.93 -0.23 0.81 16 6 C -0.50 -12.92 7.51 -34.44 -0.26 -13.18 16 7 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 8 C 0.08 2.05 5.47 -17.81 -0.10 1.95 16 9 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 10 Si 0.87 20.69 27.20 -169.99 -4.62 16.07 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.26 -5.88 6.06 56.52 0.34 -5.54 16 14 C -0.02 -0.34 3.31 -104.59 -0.35 -0.68 16 15 C -0.10 -1.98 8.86 -39.55 -0.35 -2.33 16 16 C -0.09 -1.58 10.04 -39.66 -0.40 -1.98 16 17 C -0.17 -2.79 6.32 -104.40 -0.66 -3.45 16 18 C -0.14 -2.38 6.32 -104.40 -0.66 -3.04 16 19 C -0.11 -2.13 9.67 -39.66 -0.38 -2.51 16 20 C 0.09 1.39 7.63 36.19 0.28 1.66 16 21 O -0.37 -5.68 11.72 -35.23 -0.41 -6.10 16 22 C 0.10 1.37 7.63 36.19 0.28 1.65 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.84 7.10 -51.93 -0.37 0.47 16 26 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 27 H 0.07 1.46 7.52 -51.93 -0.39 1.07 16 28 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.13 2.33 7.62 -52.48 -0.40 1.93 16 32 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.11 2.14 7.54 -52.49 -0.40 1.74 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -28.51 298.70 -7.64 -36.15 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.60 Total: 1.91 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -2.28 Total: -27.11 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 0.77 Total: -25.41 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.41 Total: -6.10 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.62 Total: 16.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.51 -7.64 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.874 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds