Wall clock time and date at job start Mon Mar 30 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47194 * 119.99575 * 2 1 3 5 5 H 1.08994 * 109.47659 * 295.90514 * 4 2 1 6 6 C 1.50697 * 109.46913 * 175.90461 * 4 2 1 7 7 H 1.08004 * 120.00740 * 305.57112 * 6 4 2 8 8 C 1.37887 * 119.99843 * 125.56882 * 6 4 2 9 9 N 1.31519 * 119.99727 * 186.09204 * 8 6 4 10 10 Si 1.86791 * 120.00067 * 6.09072 * 8 6 4 11 11 H 1.48500 * 109.47356 * 265.99069 * 10 8 6 12 12 H 1.48497 * 109.47514 * 145.98859 * 10 8 6 13 13 H 1.48506 * 109.47055 * 25.98860 * 10 8 6 14 14 C 1.50699 * 109.46849 * 55.90863 * 4 2 1 15 15 C 1.38264 * 119.98202 * 60.00132 * 14 4 2 16 16 C 1.38287 * 120.04470 * 179.97438 * 15 14 4 17 17 C 1.37968 * 119.91913 * 359.97438 * 16 15 14 18 18 C 1.38596 * 120.03882 * 0.02562 * 17 16 15 19 19 C 1.37963 * 120.04103 * 359.74961 * 18 17 16 20 20 C 1.51081 * 107.27401 * 179.97438 * 18 17 16 21 21 O 1.43946 * 105.95947 * 342.31428 * 20 18 17 22 22 C 1.43946 * 104.94526 * 28.44285 * 21 20 18 23 23 H 1.09000 * 109.47510 * 299.99687 * 1 2 3 24 24 H 1.08998 * 109.47455 * 59.99811 * 1 2 3 25 25 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47220 * 240.00437 * 2 1 3 27 27 H 1.08997 * 109.47329 * 185.07740 * 3 2 1 28 28 H 1.09008 * 109.47007 * 305.07458 * 3 2 1 29 29 H 1.09001 * 109.47222 * 65.07379 * 3 2 1 30 30 H 0.96993 * 119.99767 * 180.02562 * 9 8 6 31 31 H 1.08004 * 119.97664 * 359.97438 * 15 14 4 32 32 H 1.08005 * 120.04207 * 180.02562 * 16 15 14 33 33 H 1.07996 * 120.04511 * 180.27978 * 19 18 17 34 34 H 1.09005 * 110.15763 * 223.19090 * 20 18 17 35 35 H 1.08999 * 110.21619 * 101.46725 * 20 18 17 36 36 H 1.09000 * 110.15461 * 212.43343 * 22 21 20 37 37 H 1.09001 * 110.21398 * 90.70859 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.7379 -0.1667 2.1377 6 6 3.5435 -0.8096 1.1995 7 1 4.0307 -1.2468 0.3405 8 6 4.2974 -0.3322 2.2508 9 7 5.6088 -0.2990 2.1577 10 14 3.4559 0.2673 3.8069 11 1 3.2497 1.7355 3.7240 12 1 4.3069 -0.0474 4.9825 13 1 2.1421 -0.4097 3.9515 14 6 1.4566 -2.1096 1.3010 15 6 1.7052 -3.0023 0.2748 16 6 1.1709 -4.2769 0.3213 17 6 0.3898 -4.6570 1.3932 18 6 0.1405 -3.7623 2.4218 19 6 0.6774 -2.4922 2.3777 20 6 -0.7341 -4.4702 3.4300 21 8 -1.2950 -5.6028 2.7412 22 6 -0.3234 -5.9442 1.7355 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 3.1261 1.4440 -0.0909 28 1 1.6042 1.9820 -0.8411 29 1 1.7527 1.9295 0.9319 30 1 6.1391 0.0364 2.8973 31 1 2.3172 -2.7038 -0.5636 32 1 1.3656 -4.9743 -0.4801 33 1 0.4869 -1.7964 3.1814 34 1 -1.5288 -3.8060 3.7698 35 1 -0.1365 -4.8046 4.2780 36 1 -0.8217 -6.3439 0.8522 37 1 0.3853 -6.6732 2.1286 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261030714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:36 Heat of formation + Delta-G solvation = -47.900528 kcal Electronic energy + Delta-G solvation = -18073.594883 eV Core-core repulsion = 15393.545141 eV Total energy + Delta-G solvation = -2680.049742 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56148 -39.22335 -36.85103 -34.35714 -32.55577 -32.26393 -29.77966 -28.61182 -27.66541 -25.59705 -24.21113 -22.69923 -22.03632 -20.16892 -19.06070 -17.46154 -17.20014 -16.95162 -16.37003 -16.30817 -15.24115 -15.09230 -14.87991 -14.68535 -14.25727 -14.08802 -13.73675 -13.55569 -13.42595 -13.15304 -12.96605 -12.78033 -12.66322 -12.09671 -12.07898 -11.77607 -11.67942 -11.54410 -11.30736 -10.88877 -10.85212 -10.66453 -9.67702 -9.14284 -8.27802 -6.27796 0.44422 0.52846 1.31095 1.34090 1.42347 2.33638 2.84015 2.99039 3.11375 3.34649 3.75927 4.07325 4.16749 4.25649 4.38429 4.44798 4.46645 4.50477 4.53162 4.64173 4.76517 4.81084 4.84817 4.90930 5.02335 5.10482 5.16823 5.19751 5.28304 5.38265 5.45113 5.56408 5.58872 5.62848 5.77018 5.78306 5.92198 6.15104 6.37243 6.76551 7.35144 8.88756 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022637 B = 0.008001 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.631211 B = 3498.770069 C = 3905.468119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.047 3.953 5 H 0.041 0.959 6 C -0.486 4.486 7 H 0.037 0.963 8 C 0.017 3.983 9 N -0.947 5.947 10 Si 0.922 3.078 11 H -0.267 1.267 12 H -0.293 1.293 13 H -0.240 1.240 14 C -0.040 4.040 15 C -0.120 4.120 16 C -0.091 4.091 17 C -0.168 4.168 18 C -0.144 4.144 19 C -0.123 4.123 20 C 0.095 3.905 21 O -0.378 6.378 22 C 0.098 3.902 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.263 0.737 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.363 -5.804 -0.699 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.187 4.187 4 C 0.028 3.972 5 H 0.059 0.941 6 C -0.524 4.524 7 H 0.055 0.945 8 C -0.180 4.180 9 N -0.588 5.588 10 Si 0.748 3.252 11 H -0.192 1.192 12 H -0.220 1.220 13 H -0.163 1.163 14 C -0.040 4.040 15 C -0.139 4.139 16 C -0.109 4.109 17 C -0.168 4.168 18 C -0.144 4.144 19 C -0.141 4.141 20 C 0.019 3.981 21 O -0.296 6.296 22 C 0.023 3.977 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.416 -5.864 -0.560 14.652 hybrid contribution 0.909 0.588 0.718 1.299 sum -12.506 -5.276 0.158 13.575 Atomic orbital electron populations 1.21821 0.94873 1.01151 1.01650 1.21094 0.94940 0.96021 0.97779 1.21641 1.00544 0.95858 1.00671 1.18453 0.93437 0.89347 0.95963 0.94074 1.21028 0.90044 1.37932 1.03420 0.94478 1.25815 0.95066 0.95741 1.01355 1.70040 1.06414 1.48995 1.33312 0.86093 0.79854 0.79594 0.79706 1.19225 1.21984 1.16342 1.20470 0.92414 0.98082 0.93058 1.20987 0.99846 0.93682 0.99338 1.20547 0.96784 0.95911 0.97687 1.21169 1.01799 0.97401 0.96439 1.21183 1.00594 0.94788 0.97829 1.20387 0.99546 0.95362 0.98853 1.21790 0.96411 0.86920 0.92988 1.89002 1.42995 1.48260 1.49390 1.21795 0.90698 0.92825 0.92421 0.93047 0.91680 0.93482 0.92829 0.94429 0.91676 0.93974 0.92782 0.86668 0.83807 0.86609 0.87368 0.89724 0.86898 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 8.89 71.98 0.64 -3.64 16 2 C -0.08 -3.01 2.26 -10.79 -0.02 -3.04 16 3 C -0.13 -4.82 8.91 71.98 0.64 -4.18 16 4 C 0.05 2.06 1.48 -12.29 -0.02 2.04 16 5 H 0.04 1.82 4.38 -2.39 -0.01 1.81 16 6 C -0.49 -26.21 7.51 25.60 0.19 -26.02 16 7 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 8 C 0.02 0.97 5.47 84.66 0.46 1.43 16 9 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 10 Si 0.92 43.03 27.20 68.60 1.87 44.90 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.24 -10.23 6.06 99.48 0.60 -9.63 16 14 C -0.04 -1.61 3.31 -19.84 -0.07 -1.67 16 15 C -0.12 -4.54 8.86 22.29 0.20 -4.34 16 16 C -0.09 -2.88 10.04 22.22 0.22 -2.66 16 17 C -0.17 -5.11 6.32 -19.72 -0.12 -5.23 16 18 C -0.14 -4.67 6.32 -19.72 -0.12 -4.79 16 19 C -0.12 -4.57 9.67 22.22 0.21 -4.36 16 20 C 0.09 2.48 7.63 71.36 0.54 3.03 16 21 O -0.38 -10.17 11.72 -148.98 -1.75 -11.92 16 22 C 0.10 2.36 7.63 71.36 0.54 2.91 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.48 7.10 -2.39 -0.02 1.47 16 26 H 0.05 2.09 7.53 -2.39 -0.02 2.07 16 27 H 0.04 1.60 7.52 -2.39 -0.02 1.59 16 28 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.12 4.44 7.62 -2.91 -0.02 4.42 16 32 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.12 4.14 7.54 -2.91 -0.02 4.12 16 34 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -63.15 298.70 4.66 -58.49 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.94 Total: 16.73 kcal Atomic # 6 Polarization: -53.82 SS G_CDS: 3.30 Total: -50.52 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.30 Total: -57.68 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.75 Total: -11.92 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.87 Total: 44.90 kcal Total: -63.15 4.66 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.589 kcal (2) G-P(sol) polarization free energy of solvation -63.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds