Wall clock time and date at job start Mon Mar 30 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 116.99553 * 2 1 4 4 C 1.38756 * 120.05467 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94113 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05664 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11173 * 0.04763 * 6 5 4 8 8 C 1.50698 * 119.96913 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.43208 * 166.93074 * 8 7 6 10 10 C 1.54889 * 110.48814 * 44.39514 * 8 7 6 11 11 C 1.54889 * 102.74612 * 203.24608 * 10 8 7 12 12 C 1.54263 * 104.19853 * 37.94153 * 11 10 8 13 13 C 1.53886 * 106.59739 * 336.39009 * 12 11 10 14 14 H 1.08997 * 110.02846 * 240.71749 * 13 12 11 15 15 C 1.50698 * 110.03329 * 119.28552 * 13 12 11 16 16 H 1.08001 * 119.99446 * 328.53624 * 15 13 12 17 17 C 1.37869 * 119.99774 * 148.53708 * 15 13 12 18 18 N 1.31516 * 119.99867 * 170.32856 * 17 15 13 19 19 Si 1.86797 * 120.00253 * 350.32471 * 17 15 13 20 20 H 1.48500 * 109.46987 * 86.51353 * 19 17 15 21 21 H 1.48501 * 109.47220 * 206.51224 * 19 17 15 22 22 H 1.48495 * 109.47273 * 326.51257 * 19 17 15 23 23 C 1.38169 * 120.05480 * 0.22358 * 7 6 5 24 24 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47715 * 299.99937 * 1 2 3 26 26 H 1.09003 * 109.47739 * 60.00520 * 1 2 3 27 27 H 1.07997 * 120.02942 * 0.04762 * 4 3 2 28 28 H 1.08004 * 119.97086 * 180.02562 * 5 4 3 29 29 H 1.07992 * 119.94379 * 180.02562 * 6 5 4 30 30 H 1.08995 * 110.75314 * 321.55782 * 10 8 7 31 31 H 1.08997 * 110.75778 * 84.74609 * 10 8 7 32 32 H 1.09000 * 110.48875 * 156.61867 * 11 10 8 33 33 H 1.08998 * 110.48628 * 279.12872 * 11 10 8 34 34 H 1.08994 * 110.03904 * 95.67158 * 12 11 10 35 35 H 1.09004 * 110.03527 * 217.11032 * 12 11 10 36 36 H 0.97004 * 120.00563 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.02537 * 179.74794 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9206 3.6049 -0.0011 6 6 3.3016 3.6760 -0.0005 7 6 4.0558 2.5173 -0.0005 8 6 5.5606 2.5985 -0.0005 9 1 5.9942 1.6255 0.2306 10 6 6.0460 3.6630 1.0145 11 6 7.4478 4.0378 0.4725 12 6 7.2764 4.0254 -1.0605 13 6 6.0764 3.1102 -1.3613 14 1 6.3931 2.2707 -1.9802 15 6 4.9950 3.8907 -2.0630 16 1 4.8645 4.9418 -1.8522 17 6 4.1723 3.2628 -2.9739 18 7 3.1140 3.8866 -3.4433 19 14 4.5610 1.5261 -3.5415 20 1 3.9649 0.5506 -2.5938 21 1 3.9937 1.3096 -4.8967 22 1 6.0333 1.3375 -3.5853 23 6 3.4310 1.2850 -0.0056 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3635 0.5137 -0.8900 27 1 0.2126 2.3203 -0.0002 28 1 1.3336 4.5115 -0.0011 29 1 3.7919 4.6382 -0.0005 30 1 5.3857 4.5302 1.0103 31 1 6.1168 3.2382 2.0158 32 1 7.7365 5.0312 0.8160 33 1 8.1866 3.2986 0.7819 34 1 7.0765 5.0340 -1.4222 35 1 8.1753 3.6299 -1.5335 36 1 2.5353 3.4451 -4.0845 37 1 4.0206 0.3801 -0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261030842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:12 Heat of formation + Delta-G solvation = -23.083250 kcal Electronic energy + Delta-G solvation = -18594.367346 eV Core-core repulsion = 15915.393762 eV Total energy + Delta-G solvation = -2678.973584 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.51751 -38.06347 -35.85235 -32.34602 -30.85711 -29.59361 -28.65087 -26.89124 -26.43192 -23.91213 -21.69990 -21.19801 -19.53593 -18.57780 -17.22070 -16.48155 -15.54120 -15.22909 -15.11013 -14.55241 -14.44785 -13.64648 -13.31761 -12.78486 -12.45404 -12.37642 -12.22207 -12.03580 -11.61800 -11.13209 -11.00626 -10.83047 -10.49611 -10.39814 -10.24617 -10.03516 -9.82577 -9.76974 -9.53225 -9.35480 -8.85331 -8.41597 -7.74308 -7.14442 -6.00622 -3.91924 2.32088 2.47735 3.40507 3.44048 3.50454 3.85237 4.53273 4.74118 5.27554 5.34459 5.44303 5.53609 5.55312 5.64264 5.68792 5.74039 5.79084 6.12611 6.13380 6.32691 6.35741 6.41107 6.48979 6.52717 6.56887 6.67038 6.76130 6.92909 6.95877 7.01492 7.16843 7.33046 7.35946 7.47253 7.69288 7.77874 7.89755 8.19141 8.59317 9.02160 9.65289 11.11114 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.010726 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.000383 B = 2609.933830 C = 3146.933061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.328 6.328 3 C 0.101 3.899 4 C -0.217 4.217 5 C -0.087 4.087 6 C -0.073 4.073 7 C 0.007 3.993 8 C -0.061 4.061 9 H 0.054 0.946 10 C -0.109 4.109 11 C -0.124 4.124 12 C -0.111 4.111 13 C 0.010 3.990 14 H 0.036 0.964 15 C -0.499 4.499 16 H 0.074 0.926 17 C 0.089 3.911 18 N -0.886 5.886 19 Si 0.852 3.148 20 H -0.261 1.261 21 H -0.295 1.295 22 H -0.269 1.269 23 C -0.159 4.159 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.260 0.740 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -3.301 8.196 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.242 6.242 3 C 0.057 3.943 4 C -0.235 4.235 5 C -0.106 4.106 6 C -0.091 4.091 7 C 0.007 3.993 8 C -0.080 4.080 9 H 0.073 0.927 10 C -0.146 4.146 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.009 4.009 14 H 0.054 0.946 15 C -0.536 4.536 16 H 0.092 0.908 17 C -0.114 4.114 18 N -0.523 5.523 19 Si 0.680 3.320 20 H -0.186 1.186 21 H -0.222 1.222 22 H -0.194 1.194 23 C -0.178 4.178 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.894 -3.501 8.055 8.828 hybrid contribution -0.299 -0.900 -0.741 1.203 sum -1.192 -4.401 7.314 8.618 Atomic orbital electron populations 1.22871 0.79770 1.02666 1.00960 1.85984 1.20306 1.28111 1.89833 1.18782 0.92176 0.83407 0.99957 1.20871 0.98540 0.92750 1.11372 1.20668 0.95007 0.95902 0.98985 1.20691 0.92397 0.98257 0.97801 1.19262 0.95078 0.91435 0.93567 1.21363 0.90563 0.97235 0.98852 0.92725 1.22500 0.96362 0.98963 0.96808 1.22335 0.96770 0.99662 0.97346 1.22237 0.97962 1.01098 0.93587 1.19873 0.93665 0.95290 0.92065 0.94627 1.20861 1.13114 0.97200 1.22459 0.90815 1.24853 0.94207 0.96492 0.95895 1.69893 1.13461 1.37878 1.31056 0.87206 0.78836 0.87487 0.78485 1.18636 1.22160 1.19443 1.20106 0.90937 0.97880 1.08862 0.89265 0.93272 0.93146 0.87225 0.87276 0.86093 0.91066 0.93204 0.92928 0.92969 0.91833 0.94050 0.93027 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.33 -6.30 10.50 -19.44 -0.20 -6.51 16 3 C 0.10 2.12 6.69 -39.22 -0.26 1.86 16 4 C -0.22 -4.33 9.04 -39.43 -0.36 -4.69 16 5 C -0.09 -1.81 10.04 -39.60 -0.40 -2.21 16 6 C -0.07 -1.59 6.71 -39.56 -0.27 -1.86 16 7 C 0.01 0.15 3.50 -104.64 -0.37 -0.22 16 8 C -0.06 -1.24 3.03 -90.12 -0.27 -1.52 16 9 H 0.05 1.06 7.99 -51.93 -0.41 0.64 16 10 C -0.11 -1.90 6.21 -24.74 -0.15 -2.06 16 11 C -0.12 -2.03 6.83 -25.07 -0.17 -2.20 16 12 C -0.11 -2.16 6.45 -25.61 -0.17 -2.32 16 13 C 0.01 0.23 2.48 -90.65 -0.23 0.00 16 14 H 0.04 0.85 5.09 -51.93 -0.26 0.59 16 15 C -0.50 -12.98 5.56 -34.44 -0.19 -13.17 16 16 H 0.07 2.07 7.51 -52.49 -0.39 1.68 16 17 C 0.09 2.45 4.55 -17.82 -0.08 2.37 16 18 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 19 Si 0.85 21.80 26.54 -169.99 -4.51 17.28 16 20 H -0.26 -6.71 6.45 56.52 0.36 -6.35 16 21 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.27 -6.67 6.38 56.52 0.36 -6.31 16 23 C -0.16 -3.48 8.57 -39.43 -0.34 -3.82 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 26 H 0.05 0.70 7.66 -51.93 -0.40 0.31 16 27 H 0.11 1.89 6.30 -52.49 -0.33 1.56 16 28 H 0.11 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.12 2.65 5.82 -52.49 -0.31 2.35 16 30 H 0.07 1.28 6.20 -51.93 -0.32 0.95 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.28 7.58 -51.93 -0.39 0.89 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.11 2.33 8.01 -52.49 -0.42 1.91 16 LS Contribution 287.32 15.07 4.33 4.33 Total: -1.00 -29.31 287.32 -7.26 -36.57 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.39 Total: 1.81 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -2.26 Total: -28.39 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.77 Total: -25.10 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.20 Total: -6.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.51 Total: 17.28 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.31 -7.26 -36.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.490 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds