Wall clock time and date at job start Mon Mar 30 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 116.99553 * 2 1 4 4 C 1.38756 * 120.05467 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94113 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05664 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11173 * 0.04763 * 6 5 4 8 8 C 1.50698 * 119.96913 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.43208 * 166.93074 * 8 7 6 10 10 C 1.54889 * 110.48814 * 44.39514 * 8 7 6 11 11 C 1.54889 * 102.74612 * 203.24608 * 10 8 7 12 12 C 1.54263 * 104.19853 * 37.94153 * 11 10 8 13 13 C 1.53886 * 106.59739 * 336.39009 * 12 11 10 14 14 H 1.08997 * 110.02846 * 240.71749 * 13 12 11 15 15 C 1.50698 * 110.03329 * 119.28552 * 13 12 11 16 16 H 1.08001 * 119.99446 * 328.53624 * 15 13 12 17 17 C 1.37869 * 119.99774 * 148.53708 * 15 13 12 18 18 N 1.31516 * 119.99867 * 170.32856 * 17 15 13 19 19 Si 1.86797 * 120.00253 * 350.32471 * 17 15 13 20 20 H 1.48500 * 109.46987 * 86.51353 * 19 17 15 21 21 H 1.48501 * 109.47220 * 206.51224 * 19 17 15 22 22 H 1.48495 * 109.47273 * 326.51257 * 19 17 15 23 23 C 1.38169 * 120.05480 * 0.22358 * 7 6 5 24 24 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47715 * 299.99937 * 1 2 3 26 26 H 1.09003 * 109.47739 * 60.00520 * 1 2 3 27 27 H 1.07997 * 120.02942 * 0.04762 * 4 3 2 28 28 H 1.08004 * 119.97086 * 180.02562 * 5 4 3 29 29 H 1.07992 * 119.94379 * 180.02562 * 6 5 4 30 30 H 1.08995 * 110.75314 * 321.55782 * 10 8 7 31 31 H 1.08997 * 110.75778 * 84.74609 * 10 8 7 32 32 H 1.09000 * 110.48875 * 156.61867 * 11 10 8 33 33 H 1.08998 * 110.48628 * 279.12872 * 11 10 8 34 34 H 1.08994 * 110.03904 * 95.67158 * 12 11 10 35 35 H 1.09004 * 110.03527 * 217.11032 * 12 11 10 36 36 H 0.97004 * 120.00563 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.02537 * 179.74794 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9206 3.6049 -0.0011 6 6 3.3016 3.6760 -0.0005 7 6 4.0558 2.5173 -0.0005 8 6 5.5606 2.5985 -0.0005 9 1 5.9942 1.6255 0.2306 10 6 6.0460 3.6630 1.0145 11 6 7.4478 4.0378 0.4725 12 6 7.2764 4.0254 -1.0605 13 6 6.0764 3.1102 -1.3613 14 1 6.3931 2.2707 -1.9802 15 6 4.9950 3.8907 -2.0630 16 1 4.8645 4.9418 -1.8522 17 6 4.1723 3.2628 -2.9739 18 7 3.1140 3.8866 -3.4433 19 14 4.5610 1.5261 -3.5415 20 1 3.9649 0.5506 -2.5938 21 1 3.9937 1.3096 -4.8967 22 1 6.0333 1.3375 -3.5853 23 6 3.4310 1.2850 -0.0056 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3635 0.5137 -0.8900 27 1 0.2126 2.3203 -0.0002 28 1 1.3336 4.5115 -0.0011 29 1 3.7919 4.6382 -0.0005 30 1 5.3857 4.5302 1.0103 31 1 6.1168 3.2382 2.0158 32 1 7.7365 5.0312 0.8160 33 1 8.1866 3.2986 0.7819 34 1 7.0765 5.0340 -1.4222 35 1 8.1753 3.6299 -1.5335 36 1 2.5353 3.4451 -4.0845 37 1 4.0206 0.3801 -0.0096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261030842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:12 Heat of formation + Delta-G solvation = -39.118125 kcal Electronic energy + Delta-G solvation = -18595.062670 eV Core-core repulsion = 15915.393762 eV Total energy + Delta-G solvation = -2679.668909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06991 -39.59251 -37.38789 -34.38718 -32.43542 -31.12558 -30.40163 -28.29374 -27.83865 -25.76959 -23.32133 -22.75877 -21.00197 -20.25838 -19.08075 -18.17180 -17.03375 -16.75338 -16.54598 -16.29114 -16.03752 -15.38517 -14.81254 -14.54681 -14.24606 -13.90304 -13.81089 -13.71084 -13.01899 -12.79190 -12.67014 -12.45656 -12.21292 -11.92403 -11.77003 -11.60612 -11.44866 -11.39517 -11.16080 -11.11601 -10.75055 -10.48697 -9.38799 -8.76553 -8.14708 -6.04341 0.69081 0.83708 1.34342 1.39072 1.41706 2.43743 2.50110 3.07855 3.27560 3.99390 4.03640 4.11038 4.22387 4.26234 4.37831 4.38617 4.55295 4.63348 4.68534 4.75817 4.78424 4.93337 4.96393 5.06740 5.09470 5.11008 5.27502 5.36409 5.37761 5.50726 5.55595 5.65607 5.75549 5.83306 5.85983 6.13808 6.15615 6.49496 6.65987 6.91419 7.53341 8.99632 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.010726 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.000383 B = 2609.933830 C = 3146.933061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.344 6.344 3 C 0.096 3.904 4 C -0.220 4.220 5 C -0.096 4.096 6 C -0.090 4.090 7 C -0.002 4.002 8 C -0.062 4.062 9 H 0.067 0.933 10 C -0.105 4.105 11 C -0.113 4.113 12 C -0.112 4.112 13 C 0.001 3.999 14 H 0.023 0.977 15 C -0.477 4.477 16 H 0.044 0.956 17 C 0.050 3.950 18 N -0.925 5.925 19 Si 0.889 3.111 20 H -0.263 1.263 21 H -0.304 1.304 22 H -0.256 1.256 23 C -0.181 4.181 24 H 0.121 0.879 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.254 0.746 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 -4.263 9.604 10.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.258 6.258 3 C 0.052 3.948 4 C -0.239 4.239 5 C -0.114 4.114 6 C -0.108 4.108 7 C -0.002 4.002 8 C -0.081 4.081 9 H 0.085 0.915 10 C -0.142 4.142 11 C -0.150 4.150 12 C -0.149 4.149 13 C -0.018 4.018 14 H 0.042 0.958 15 C -0.515 4.515 16 H 0.062 0.938 17 C -0.149 4.149 18 N -0.564 5.564 19 Si 0.716 3.284 20 H -0.188 1.188 21 H -0.232 1.232 22 H -0.181 1.181 23 C -0.200 4.200 24 H 0.139 0.861 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.340 -4.473 9.478 10.485 hybrid contribution -0.535 -0.600 -1.143 1.398 sum -0.875 -5.072 8.334 9.796 Atomic orbital electron populations 1.23245 0.77072 1.05174 1.01738 1.85965 1.23108 1.27234 1.89531 1.18967 0.92308 0.84436 0.99102 1.21152 1.00015 0.92075 1.10647 1.20951 0.94981 0.97028 0.98421 1.20696 0.93075 0.97944 0.99128 1.19432 0.95874 0.91357 0.93505 1.21349 0.89912 0.98744 0.98118 0.91456 1.22483 0.96657 0.97727 0.97339 1.22298 0.96590 1.01615 0.94541 1.22170 0.96991 0.99412 0.96356 1.19943 0.93920 0.95077 0.92857 0.95838 1.20961 1.13183 0.95944 1.21413 0.93789 1.25276 0.94351 0.98627 0.96645 1.70005 1.14843 1.39039 1.32545 0.86609 0.79279 0.85002 0.77461 1.18816 1.23150 1.18069 1.20308 0.91793 0.98019 1.09898 0.86065 0.91497 0.93244 0.84507 0.85912 0.87179 0.92128 0.90701 0.90969 0.90650 0.93354 0.92635 0.93660 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.81 113.37 1.11 1.68 16 2 O -0.34 -12.64 10.50 -92.48 -0.97 -13.61 16 3 C 0.10 3.96 6.69 22.51 0.15 4.11 16 4 C -0.22 -8.56 9.04 22.37 0.20 -8.36 16 5 C -0.10 -3.94 10.04 22.26 0.22 -3.71 16 6 C -0.09 -3.94 6.71 22.28 0.15 -3.79 16 7 C 0.00 -0.07 3.50 -19.88 -0.07 -0.14 16 8 C -0.06 -2.44 3.03 -10.47 -0.03 -2.48 16 9 H 0.07 2.46 7.99 -2.39 -0.02 2.44 16 10 C -0.10 -3.41 6.21 31.88 0.20 -3.22 16 11 C -0.11 -3.34 6.83 31.67 0.22 -3.13 16 12 C -0.11 -4.13 6.45 31.32 0.20 -3.93 16 13 C 0.00 0.04 2.48 -10.81 -0.03 0.01 16 14 H 0.02 1.09 5.09 -2.39 -0.01 1.08 16 15 C -0.48 -25.09 5.56 25.60 0.14 -24.95 16 16 H 0.04 2.55 7.51 -2.91 -0.02 2.53 16 17 C 0.05 2.79 4.55 84.65 0.39 3.17 16 18 N -0.92 -55.18 13.96 21.44 0.30 -54.88 16 19 Si 0.89 44.93 26.54 68.60 1.82 46.75 16 20 H -0.26 -13.29 6.45 99.48 0.64 -12.65 16 21 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 22 H -0.26 -12.26 6.38 99.48 0.63 -11.62 16 23 C -0.18 -7.83 8.57 22.37 0.19 -7.63 16 24 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 1.47 7.66 -2.39 -0.02 1.45 16 26 H 0.05 1.27 7.66 -2.39 -0.02 1.25 16 27 H 0.14 4.43 6.30 -2.91 -0.02 4.41 16 28 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.11 4.95 5.82 -2.91 -0.02 4.93 16 30 H 0.06 2.10 6.20 -2.39 -0.01 2.09 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.91 7.58 -2.39 -0.02 1.89 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.11 4.68 8.01 -2.91 -0.02 4.65 16 Total: -1.00 -63.16 287.32 5.11 -58.05 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.91 Total: 16.06 kcal Atomic # 6 Polarization: -55.41 SS G_CDS: 3.05 Total: -52.37 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.30 Total: -54.88 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.97 Total: -13.61 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.82 Total: 46.75 kcal Total: -63.16 5.11 -58.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.932 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds