Wall clock time and date at job start Mon Mar 30 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35900 * 117.00246 * 2 1 4 4 C 1.38754 * 120.05153 * 359.97438 * 3 2 1 5 5 C 1.38134 * 119.94273 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05320 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11583 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.97622 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.05579 * 181.42111 * 8 7 6 10 10 C 1.54266 * 110.02909 * 302.83339 * 8 7 6 11 11 C 1.55238 * 104.23333 * 142.89580 * 10 8 7 12 12 C 1.54894 * 102.58338 * 322.08174 * 11 10 8 13 13 C 1.53869 * 110.03024 * 59.99620 * 8 7 6 14 14 H 1.08995 * 110.03881 * 0.02562 * 13 8 7 15 15 C 1.50710 * 110.07030 * 121.41162 * 13 8 7 16 16 H 1.07997 * 119.99847 * 358.64898 * 15 13 8 17 17 C 1.37878 * 119.99864 * 178.64061 * 15 13 8 18 18 N 1.31510 * 119.99892 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99671 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47050 * 90.00636 * 19 17 15 21 21 H 1.48500 * 109.47230 * 210.00337 * 19 17 15 22 22 H 1.48497 * 109.47265 * 330.00635 * 19 17 15 23 23 C 1.38171 * 120.05237 * 0.25420 * 7 6 5 24 24 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47131 * 300.00428 * 1 2 3 26 26 H 1.08998 * 109.47189 * 59.99979 * 1 2 3 27 27 H 1.07991 * 120.03207 * 359.95863 * 4 3 2 28 28 H 1.08000 * 119.97335 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.94381 * 179.97438 * 6 5 4 30 30 H 1.09005 * 110.48526 * 261.57452 * 10 8 7 31 31 H 1.09007 * 110.48724 * 24.07936 * 10 8 7 32 32 H 1.08996 * 110.89448 * 203.79739 * 11 10 8 33 33 H 1.08993 * 110.76342 * 80.31404 * 11 10 8 34 34 H 1.09002 * 110.48891 * 279.18596 * 12 11 10 35 35 H 1.08998 * 110.48494 * 156.67683 * 12 11 10 36 36 H 0.97005 * 119.99979 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.02621 * 179.72647 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0011 8 6 5.5608 2.5982 0.0011 9 1 5.9891 1.5962 -0.0239 10 6 6.0462 3.4107 -1.2171 11 6 7.2631 4.2119 -0.6812 12 6 6.8128 4.5914 0.7514 13 6 6.0482 3.3489 1.2526 14 1 5.1964 3.6543 1.8603 15 6 6.9672 2.4678 2.0591 16 1 7.1721 1.4590 1.7325 17 6 7.5464 2.9497 3.2139 18 7 7.2965 4.1780 3.6117 19 14 8.6848 1.8573 4.2138 20 1 10.0808 2.0296 3.7374 21 1 8.6009 2.2356 5.6474 22 1 8.2780 0.4384 4.0516 23 6 3.4310 1.2848 -0.0042 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3204 -0.0016 28 1 1.3340 4.5114 -0.0008 29 1 3.7922 4.6381 0.0005 30 1 6.3537 2.7437 -2.0226 31 1 5.2635 4.0870 -1.5610 32 1 7.4352 5.1052 -1.2814 33 1 8.1553 3.5864 -0.6528 34 1 6.1548 5.4601 0.7269 35 1 7.6785 4.7875 1.3840 36 1 7.7036 4.5169 4.4243 37 1 4.0206 0.3799 -0.0083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261030846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:15 Heat of formation + Delta-G solvation = -32.737546 kcal Electronic energy + Delta-G solvation = -17768.694649 eV Core-core repulsion = 15089.302422 eV Total energy + Delta-G solvation = -2679.392226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88800 -38.11745 -36.12377 -32.45186 -31.09326 -29.92643 -27.99000 -27.26543 -26.53530 -24.04590 -22.17341 -21.39706 -19.58725 -18.81399 -17.13928 -16.29715 -15.84477 -15.56673 -15.45481 -14.61171 -14.49309 -13.83082 -13.48922 -13.14015 -12.68493 -12.48354 -12.24268 -11.87166 -11.46150 -11.40287 -11.01610 -10.94121 -10.71903 -10.48003 -10.31801 -10.14015 -9.88218 -9.75398 -9.55614 -9.36981 -8.74381 -8.27466 -8.20372 -7.75798 -5.94839 -3.98374 1.79247 1.88243 3.33648 3.40534 3.43993 3.47328 4.21253 4.48380 5.01351 5.16023 5.18541 5.25712 5.35817 5.44780 5.56149 5.66066 5.79630 5.84912 5.87081 5.97520 6.17863 6.44145 6.47114 6.57040 6.64960 6.69935 6.79932 6.83139 6.89826 7.00471 7.17997 7.25245 7.34819 7.51602 7.71014 7.78654 8.01631 8.04124 8.52648 9.03901 9.64726 11.12860 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.006607 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.347078 B = 4236.846050 C = 4865.326126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.120 3.880 4 C -0.227 4.227 5 C -0.085 4.085 6 C -0.148 4.148 7 C -0.005 4.005 8 C -0.058 4.058 9 H 0.073 0.927 10 C -0.112 4.112 11 C -0.122 4.122 12 C -0.102 4.102 13 C 0.059 3.941 14 H 0.030 0.970 15 C -0.507 4.507 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.886 3.114 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.153 4.153 24 H 0.094 0.906 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.259 0.741 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 -2.497 -8.350 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.076 3.924 4 C -0.246 4.246 5 C -0.103 4.103 6 C -0.166 4.166 7 C -0.005 4.005 8 C -0.076 4.076 9 H 0.091 0.909 10 C -0.149 4.149 11 C -0.160 4.160 12 C -0.140 4.140 13 C 0.040 3.960 14 H 0.048 0.952 15 C -0.545 4.545 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.171 4.171 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.251 -2.572 -8.195 13.373 hybrid contribution 0.290 -0.416 0.740 0.897 sum -9.961 -2.988 -7.455 12.796 Atomic orbital electron populations 1.22957 0.79177 1.03296 1.01076 1.86048 1.20766 1.27541 1.89190 1.18986 0.92309 0.83723 0.97400 1.21023 0.99211 0.92580 1.11739 1.20844 0.94680 0.96532 0.98218 1.20971 0.93199 0.98754 1.03674 1.20024 0.96731 0.91464 0.92285 1.21190 0.88105 1.00807 0.97494 0.90854 1.22493 0.97945 0.98039 0.96453 1.22546 0.97334 0.97984 0.98090 1.22310 1.01061 0.97356 0.93321 1.19305 0.95095 0.91827 0.89754 0.95157 1.21284 1.27278 0.98725 1.07231 0.92734 1.24950 0.96733 0.95002 0.97381 1.69973 1.44078 1.15189 1.23588 0.86681 0.81267 0.81098 0.79496 1.20757 1.21342 1.19963 1.20379 0.90859 0.98579 1.07301 0.88746 0.92912 0.93036 0.86349 0.86427 0.85837 0.93232 0.92466 0.93759 0.92076 0.95393 0.90228 0.93151 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.93 10.50 -19.43 -0.20 -5.14 16 3 C 0.12 2.03 6.69 -39.22 -0.26 1.76 16 4 C -0.23 -3.43 9.04 -39.43 -0.36 -3.79 16 5 C -0.08 -1.32 10.04 -39.60 -0.40 -1.71 16 6 C -0.15 -2.64 8.13 -39.56 -0.32 -2.96 16 7 C 0.00 -0.09 4.68 -104.64 -0.49 -0.58 16 8 C -0.06 -1.19 2.78 -90.65 -0.25 -1.44 16 9 H 0.07 1.56 7.14 -51.93 -0.37 1.19 16 10 C -0.11 -2.04 6.27 -24.88 -0.16 -2.19 16 11 C -0.12 -2.38 6.94 -24.55 -0.17 -2.55 16 12 C -0.10 -2.38 5.90 -25.07 -0.15 -2.53 16 13 C 0.06 1.44 2.28 -90.65 -0.21 1.23 16 14 H 0.03 0.83 7.30 -51.93 -0.38 0.45 16 15 C -0.51 -13.85 8.52 -34.44 -0.29 -14.14 16 16 H 0.05 1.48 7.33 -52.49 -0.38 1.09 16 17 C 0.06 1.68 5.07 -17.82 -0.09 1.59 16 18 N -0.89 -25.58 11.85 55.43 0.66 -24.92 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.15 -2.83 9.62 -39.43 -0.38 -3.21 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.12 1.44 6.30 -52.49 -0.33 1.11 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 2.18 7.73 -52.49 -0.41 1.77 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.98 6.86 -51.93 -0.36 0.62 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 2.09 6.42 -51.93 -0.33 1.75 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.13 2.27 7.96 -52.49 -0.42 1.85 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -29.44 298.41 -8.05 -37.49 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.45 Total: 0.86 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -2.53 Total: -29.23 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.66 Total: -24.92 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.20 Total: -5.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.44 -8.05 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.756 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds