Wall clock time and date at job start Mon Mar 30 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35900 * 117.00246 * 2 1 4 4 C 1.38754 * 120.05153 * 359.97438 * 3 2 1 5 5 C 1.38134 * 119.94273 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05320 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11583 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.97622 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.05579 * 181.42111 * 8 7 6 10 10 C 1.54266 * 110.02909 * 302.83339 * 8 7 6 11 11 C 1.55238 * 104.23333 * 142.89580 * 10 8 7 12 12 C 1.54894 * 102.58338 * 322.08174 * 11 10 8 13 13 C 1.53869 * 110.03024 * 59.99620 * 8 7 6 14 14 H 1.08995 * 110.03881 * 0.02562 * 13 8 7 15 15 C 1.50710 * 110.07030 * 121.41162 * 13 8 7 16 16 H 1.07997 * 119.99847 * 358.64898 * 15 13 8 17 17 C 1.37878 * 119.99864 * 178.64061 * 15 13 8 18 18 N 1.31510 * 119.99892 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99671 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47050 * 90.00636 * 19 17 15 21 21 H 1.48500 * 109.47230 * 210.00337 * 19 17 15 22 22 H 1.48497 * 109.47265 * 330.00635 * 19 17 15 23 23 C 1.38171 * 120.05237 * 0.25420 * 7 6 5 24 24 H 1.09001 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47131 * 300.00428 * 1 2 3 26 26 H 1.08998 * 109.47189 * 59.99979 * 1 2 3 27 27 H 1.07991 * 120.03207 * 359.95863 * 4 3 2 28 28 H 1.08000 * 119.97335 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.94381 * 179.97438 * 6 5 4 30 30 H 1.09005 * 110.48526 * 261.57452 * 10 8 7 31 31 H 1.09007 * 110.48724 * 24.07936 * 10 8 7 32 32 H 1.08996 * 110.89448 * 203.79739 * 11 10 8 33 33 H 1.08993 * 110.76342 * 80.31404 * 11 10 8 34 34 H 1.09002 * 110.48891 * 279.18596 * 12 11 10 35 35 H 1.08998 * 110.48494 * 156.67683 * 12 11 10 36 36 H 0.97005 * 119.99979 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.02621 * 179.72647 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5171 0.0011 8 6 5.5608 2.5982 0.0011 9 1 5.9891 1.5962 -0.0239 10 6 6.0462 3.4107 -1.2171 11 6 7.2631 4.2119 -0.6812 12 6 6.8128 4.5914 0.7514 13 6 6.0482 3.3489 1.2526 14 1 5.1964 3.6543 1.8603 15 6 6.9672 2.4678 2.0591 16 1 7.1721 1.4590 1.7325 17 6 7.5464 2.9497 3.2139 18 7 7.2965 4.1780 3.6117 19 14 8.6848 1.8573 4.2138 20 1 10.0808 2.0296 3.7374 21 1 8.6009 2.2356 5.6474 22 1 8.2780 0.4384 4.0516 23 6 3.4310 1.2848 -0.0042 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3204 -0.0016 28 1 1.3340 4.5114 -0.0008 29 1 3.7922 4.6381 0.0005 30 1 6.3537 2.7437 -2.0226 31 1 5.2635 4.0870 -1.5610 32 1 7.4352 5.1052 -1.2814 33 1 8.1553 3.5864 -0.6528 34 1 6.1548 5.4601 0.7269 35 1 7.6785 4.7875 1.3840 36 1 7.7036 4.5169 4.4243 37 1 4.0206 0.3799 -0.0083 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261030846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:15 Heat of formation + Delta-G solvation = -48.062801 kcal Electronic energy + Delta-G solvation = -17769.359202 eV Core-core repulsion = 15089.302422 eV Total energy + Delta-G solvation = -2680.056779 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15419 -39.55669 -37.56393 -34.49431 -32.48895 -31.19516 -29.88350 -28.46487 -27.83449 -26.00592 -23.46926 -22.79360 -21.27764 -20.37920 -18.49780 -18.24044 -17.08946 -16.90336 -16.58935 -16.47236 -16.02381 -15.43729 -14.91011 -14.35345 -14.27424 -14.06335 -13.57491 -13.35934 -13.08652 -12.87219 -12.66519 -12.45644 -12.28437 -12.09963 -11.88648 -11.65342 -11.58095 -11.43028 -11.23960 -11.13434 -10.76095 -10.37766 -9.59903 -9.04591 -8.08272 -6.18287 0.47977 0.57285 1.39649 1.40559 1.50353 2.41264 2.44986 2.88856 3.21009 3.89771 3.94578 4.10569 4.21977 4.23797 4.35538 4.42806 4.43127 4.56499 4.61560 4.72533 4.74693 4.94745 5.00592 5.01869 5.09506 5.18556 5.23798 5.31777 5.39019 5.50781 5.57677 5.66860 5.68962 5.86285 5.92998 5.99961 6.09796 6.45467 6.53901 6.92621 7.47949 8.98615 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.006607 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.347078 B = 4236.846050 C = 4865.326126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.118 3.882 4 C -0.219 4.219 5 C -0.079 4.079 6 C -0.165 4.165 7 C -0.025 4.025 8 C -0.052 4.052 9 H 0.057 0.943 10 C -0.102 4.102 11 C -0.114 4.114 12 C -0.100 4.100 13 C 0.057 3.943 14 H -0.007 1.007 15 C -0.524 4.524 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 0.947 3.053 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.178 4.178 24 H 0.118 0.882 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.044 0.956 36 H 0.259 0.741 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -2.762 -9.436 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.073 3.927 4 C -0.238 4.238 5 C -0.096 4.096 6 C -0.183 4.183 7 C -0.025 4.025 8 C -0.071 4.071 9 H 0.076 0.924 10 C -0.139 4.139 11 C -0.151 4.151 12 C -0.138 4.138 13 C 0.039 3.961 14 H 0.012 0.988 15 C -0.562 4.562 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.773 3.227 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.196 4.196 24 H 0.137 0.863 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.838 -2.848 -9.292 15.316 hybrid contribution 0.652 -0.377 1.101 1.334 sum -11.185 -3.226 -8.190 14.234 Atomic orbital electron populations 1.23340 0.76426 1.05484 1.02305 1.86029 1.23609 1.26938 1.88891 1.19067 0.91894 0.85037 0.96702 1.21413 1.00955 0.91577 1.09822 1.21221 0.93847 0.98191 0.96385 1.21049 0.94513 0.97971 1.04747 1.19919 0.95843 0.92518 0.94265 1.20984 0.89648 0.99659 0.96781 0.92424 1.22443 0.97580 0.98107 0.95809 1.22477 0.97483 0.99242 0.95902 1.22157 0.99510 0.96875 0.95243 1.19216 0.93481 0.92547 0.90864 0.98841 1.21639 1.27759 0.98875 1.07975 0.93357 1.25678 0.98204 0.96222 0.98482 1.70095 1.45062 1.16590 1.23944 0.85730 0.79630 0.79397 0.77987 1.19876 1.21023 1.19648 1.20418 0.92253 0.98048 1.08919 0.86337 0.91982 0.91319 0.82770 0.83070 0.86240 0.91094 0.90907 0.90848 0.92826 0.95152 0.93711 0.93202 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -9.87 10.50 -92.42 -0.97 -10.84 16 3 C 0.12 3.83 6.69 22.51 0.15 3.98 16 4 C -0.22 -6.01 9.04 22.37 0.20 -5.81 16 5 C -0.08 -2.25 10.04 22.26 0.22 -2.03 16 6 C -0.16 -5.79 8.13 22.28 0.18 -5.61 16 7 C -0.03 -0.99 4.68 -19.88 -0.09 -1.08 16 8 C -0.05 -2.21 2.78 -10.82 -0.03 -2.24 16 9 H 0.06 2.56 7.14 -2.39 -0.02 2.54 16 10 C -0.10 -3.62 6.27 31.79 0.20 -3.42 16 11 C -0.11 -4.35 6.94 32.01 0.22 -4.13 16 12 C -0.10 -4.75 5.90 31.67 0.19 -4.56 16 13 C 0.06 2.93 2.28 -10.81 -0.02 2.91 16 14 H -0.01 -0.38 7.30 -2.39 -0.02 -0.40 16 15 C -0.52 -29.67 8.52 25.60 0.22 -29.45 16 16 H 0.05 2.71 7.33 -2.91 -0.02 2.69 16 17 C 0.01 0.71 5.07 84.66 0.43 1.14 16 18 N -0.92 -54.37 11.85 21.45 0.25 -54.11 16 19 Si 0.95 44.84 29.54 68.60 2.03 46.87 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 C -0.18 -6.68 9.62 22.37 0.22 -6.46 16 24 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 26 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 27 H 0.15 3.06 6.30 -2.92 -0.02 3.04 16 28 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.12 4.20 7.73 -2.91 -0.02 4.17 16 30 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.07 2.36 6.86 -2.38 -0.02 2.34 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 2.42 6.42 -2.39 -0.02 2.41 16 36 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 37 H 0.12 4.41 7.96 -2.91 -0.02 4.39 16 Total: -1.00 -65.54 298.41 5.54 -60.00 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.04 Total: 13.41 kcal Atomic # 6 Polarization: -58.52 SS G_CDS: 3.19 Total: -55.32 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.25 Total: -54.11 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.97 Total: -10.84 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.54 5.54 -60.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.934 kcal (2) G-P(sol) polarization free energy of solvation -65.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds