Wall clock time and date at job start Mon Mar 30 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 116.99913 * 2 1 4 4 C 1.38756 * 120.05572 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94354 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05294 * 359.73975 * 5 4 3 7 7 C 1.38239 * 120.11507 * 0.51499 * 6 5 4 8 8 C 1.50706 * 119.97515 * 179.76730 * 7 6 5 9 9 H 1.09000 * 110.01820 * 178.33212 * 8 7 6 10 10 C 1.54266 * 110.03307 * 56.88766 * 8 7 6 11 11 C 1.54886 * 104.19636 * 217.11019 * 10 8 7 12 12 C 1.54893 * 102.74991 * 37.94243 * 11 10 8 13 13 C 1.53873 * 110.02927 * 299.72305 * 8 7 6 14 14 H 1.09003 * 110.03151 * 359.95277 * 13 8 7 15 15 C 1.50697 * 110.03220 * 238.57043 * 13 8 7 16 16 H 1.07995 * 120.00125 * 359.97438 * 15 13 8 17 17 C 1.37885 * 120.00297 * 180.02562 * 15 13 8 18 18 N 1.31516 * 119.99268 * 359.97438 * 17 15 13 19 19 Si 1.86789 * 120.00314 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47114 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47278 * 119.99608 * 19 17 15 22 22 H 1.48503 * 109.47460 * 239.99934 * 19 17 15 23 23 C 1.38170 * 120.05415 * 359.49023 * 7 6 5 24 24 H 1.09000 * 109.47353 * 299.99733 * 1 2 3 25 25 H 1.09000 * 109.47756 * 59.99956 * 1 2 3 26 26 H 1.09002 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.02874 * 359.95577 * 4 3 2 28 28 H 1.08000 * 119.97043 * 180.02562 * 5 4 3 29 29 H 1.08007 * 119.94118 * 180.28240 * 6 5 4 30 30 H 1.08998 * 110.48379 * 335.78457 * 10 8 7 31 31 H 1.09001 * 110.48707 * 98.43031 * 10 8 7 32 32 H 1.09004 * 110.75377 * 279.62714 * 11 10 8 33 33 H 1.09001 * 110.75934 * 156.25868 * 11 10 8 34 34 H 1.08997 * 110.48365 * 203.38574 * 12 11 10 35 35 H 1.08990 * 110.48541 * 80.73549 * 12 11 10 36 36 H 0.97003 * 119.99582 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.02398 * 180.27901 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6757 0.0065 7 6 4.0559 2.5171 0.0007 8 6 5.5608 2.5982 0.0013 9 1 5.9884 1.5959 0.0260 10 6 6.0457 3.4109 1.2195 11 6 7.2598 4.2099 0.6842 12 6 6.8130 4.5914 -0.7489 13 6 6.0486 3.3487 -1.2502 14 1 5.1970 3.6535 -1.8585 15 6 6.9682 2.4669 -2.0552 16 1 7.1904 1.4661 -1.7159 17 6 7.5266 2.9384 -3.2244 18 7 7.2564 4.1574 -3.6373 19 14 8.6670 1.8457 -4.2218 20 1 8.8074 0.5302 -3.5472 21 1 8.0996 1.6469 -5.5797 22 1 10.0000 2.4909 -4.3319 23 6 3.4310 1.2848 0.0000 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2128 2.3203 0.0002 28 1 1.3339 4.5113 0.0019 29 1 3.7921 4.6381 0.0115 30 1 5.2637 4.0889 1.5615 31 1 6.3530 2.7441 2.0252 32 1 8.1521 3.5844 0.6570 33 1 7.4307 5.1024 1.2861 34 1 7.6803 4.7859 -1.3798 35 1 6.1550 5.4599 -0.7248 36 1 7.6489 4.4890 -4.4601 37 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261030847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:17 Heat of formation + Delta-G solvation = -48.487163 kcal Electronic energy + Delta-G solvation = -17769.897343 eV Core-core repulsion = 15089.822162 eV Total energy + Delta-G solvation = -2680.075181 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15562 -39.56479 -37.56876 -34.49642 -32.49407 -31.19526 -29.89786 -28.46371 -27.83410 -26.01069 -23.46952 -22.79166 -21.27380 -20.38122 -18.50279 -18.24416 -17.08999 -16.90309 -16.58760 -16.46897 -16.02871 -15.44156 -14.91180 -14.35290 -14.28416 -14.06122 -13.57532 -13.36871 -13.08421 -12.89244 -12.66481 -12.45168 -12.26679 -12.10097 -11.88934 -11.65225 -11.58399 -11.43811 -11.23784 -11.13522 -10.75123 -10.39162 -9.59790 -9.04509 -8.08898 -6.18432 0.48128 0.57363 1.38282 1.40451 1.51390 2.41284 2.44888 2.88950 3.20824 3.89924 3.94748 4.10806 4.21576 4.23653 4.35577 4.42808 4.43132 4.56638 4.61575 4.72551 4.74673 4.94834 5.00328 5.02456 5.09534 5.18620 5.23590 5.31793 5.39120 5.50583 5.57683 5.66751 5.68722 5.86235 5.92589 5.99877 6.08806 6.45285 6.53950 6.92883 7.47847 8.98637 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.006628 C = 0.005764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.481027 B = 4223.761051 C = 4856.353234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.118 3.882 4 C -0.219 4.219 5 C -0.079 4.079 6 C -0.165 4.165 7 C -0.025 4.025 8 C -0.052 4.052 9 H 0.057 0.943 10 C -0.102 4.102 11 C -0.114 4.114 12 C -0.099 4.099 13 C 0.057 3.943 14 H -0.006 1.006 15 C -0.523 4.523 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.947 3.053 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.278 1.278 23 C -0.178 4.178 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.030 0.970 36 H 0.259 0.741 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.894 -2.738 9.515 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.073 3.927 4 C -0.238 4.238 5 C -0.097 4.097 6 C -0.183 4.183 7 C -0.025 4.025 8 C -0.071 4.071 9 H 0.076 0.924 10 C -0.140 4.140 11 C -0.151 4.151 12 C -0.137 4.137 13 C 0.038 3.962 14 H 0.012 0.988 15 C -0.561 4.561 16 H 0.067 0.933 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.773 3.227 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.204 1.204 23 C -0.196 4.196 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.783 -2.828 9.374 15.321 hybrid contribution 0.643 -0.370 -1.121 1.344 sum -11.140 -3.198 8.254 14.229 Atomic orbital electron populations 1.23341 0.76427 1.05485 1.02303 1.86031 1.23607 1.26937 1.88891 1.19066 0.91894 0.85035 0.96705 1.21411 1.00954 0.91582 1.09830 1.21219 0.93859 0.98189 0.96387 1.21049 0.94507 0.97970 1.04754 1.19919 0.95851 0.92516 0.94256 1.20993 0.89653 0.99663 0.96772 0.92430 1.22387 0.97615 0.98116 0.95835 1.22421 0.97542 0.99280 0.95863 1.22155 0.99383 0.96927 0.95246 1.19224 0.93521 0.92534 0.90880 0.98770 1.21664 1.27874 0.99552 1.06993 0.93341 1.25688 0.98192 0.96229 0.98536 1.70105 1.45387 1.17256 1.23033 0.85674 0.79003 0.79438 0.78606 1.19276 1.20934 1.20398 1.20418 0.92252 0.98057 1.08913 0.91326 0.91977 0.86336 0.82778 0.83077 0.86222 0.90889 0.91054 0.92791 0.90849 0.93905 0.95083 0.93212 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -9.88 10.50 -92.38 -0.97 -10.85 16 3 C 0.12 3.83 6.69 22.51 0.15 3.98 16 4 C -0.22 -6.02 9.04 22.37 0.20 -5.81 16 5 C -0.08 -2.26 10.04 22.25 0.22 -2.03 16 6 C -0.16 -5.78 8.14 22.28 0.18 -5.60 16 7 C -0.03 -0.99 4.68 -19.88 -0.09 -1.08 16 8 C -0.05 -2.21 2.78 -10.81 -0.03 -2.24 16 9 H 0.06 2.55 7.13 -2.39 -0.02 2.54 16 10 C -0.10 -3.61 6.26 31.67 0.20 -3.41 16 11 C -0.11 -4.33 6.91 31.89 0.22 -4.11 16 12 C -0.10 -4.70 5.93 31.67 0.19 -4.51 16 13 C 0.06 2.90 2.26 -10.82 -0.02 2.88 16 14 H -0.01 -0.34 7.31 -2.39 -0.02 -0.36 16 15 C -0.52 -29.56 8.49 25.60 0.22 -29.34 16 16 H 0.05 2.73 7.33 -2.91 -0.02 2.71 16 17 C 0.01 0.67 5.08 84.66 0.43 1.10 16 18 N -0.92 -54.50 11.97 21.45 0.26 -54.24 16 19 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 C -0.18 -6.68 9.62 22.37 0.22 -6.47 16 24 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 25 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 26 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.15 3.06 6.30 -2.91 -0.02 3.04 16 28 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.12 4.19 7.71 -2.91 -0.02 4.17 16 30 H 0.07 2.36 6.84 -2.39 -0.02 2.34 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.04 2.31 6.54 -2.39 -0.02 2.29 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.12 4.42 7.96 -2.91 -0.02 4.39 16 Total: -1.00 -65.66 298.56 5.55 -60.11 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.04 Total: 13.28 kcal Atomic # 6 Polarization: -58.42 SS G_CDS: 3.19 Total: -55.23 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.26 Total: -54.24 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.97 Total: -10.85 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.66 5.55 -60.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261030847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.628 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds