Wall clock time and date at job start Mon Mar 30 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99758 * 2 1 4 4 H 1.48501 * 109.47088 * 270.00154 * 3 2 1 5 5 H 1.48504 * 109.46926 * 29.99759 * 3 2 1 6 6 H 1.48500 * 109.47132 * 150.00090 * 3 2 1 7 7 C 1.37877 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00119 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.46896 * 59.99893 * 9 7 2 11 11 N 1.46903 * 109.47079 * 299.99702 * 9 7 2 12 12 C 1.50701 * 109.47073 * 179.97438 * 9 7 2 13 13 C 1.38301 * 119.96301 * 79.99724 * 12 9 7 14 14 C 1.38265 * 120.14969 * 180.02562 * 13 12 9 15 15 C 1.38124 * 120.07665 * 0.04448 * 14 13 12 16 16 C 1.38898 * 119.92427 * 0.23268 * 15 14 13 17 17 N 1.39669 * 120.07988 * 179.74633 * 16 15 14 18 18 C 1.48537 * 110.99755 * 296.81645 * 17 16 15 19 19 C 1.54936 * 103.22532 * 159.71617 * 18 17 16 20 20 C 1.54595 * 102.92438 * 322.58490 * 19 18 17 21 21 C 1.47897 * 110.99863 * 54.20981 * 17 16 15 22 22 C 1.38085 * 119.95953 * 260.02094 * 12 9 7 23 23 H 0.96995 * 120.00375 * 0.02562 * 1 2 3 24 24 H 1.00901 * 111.00072 * 300.00422 * 11 9 7 25 25 H 1.00906 * 110.99668 * 63.95265 * 11 9 7 26 26 H 1.08003 * 119.92724 * 0.02562 * 13 12 9 27 27 H 1.07998 * 119.96723 * 180.02562 * 14 13 12 28 28 H 1.07992 * 120.04370 * 179.97438 * 15 14 13 29 29 H 1.08997 * 110.66759 * 278.15517 * 18 17 16 30 30 H 1.09003 * 110.66744 * 41.28607 * 18 17 16 31 31 H 1.09000 * 110.72468 * 204.22869 * 19 18 17 32 32 H 1.09001 * 110.72352 * 80.94978 * 19 18 17 33 33 H 1.08998 * 110.31216 * 263.03969 * 20 19 18 34 34 H 1.09003 * 110.30626 * 140.86826 * 20 19 18 35 35 H 1.09006 * 109.91778 * 333.51282 * 21 17 16 36 36 H 1.09000 * 109.91921 * 94.80480 * 21 17 16 37 37 H 1.08000 * 120.04157 * 359.97438 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5117 -1.1939 0.0000 10 1 3.8746 -0.6806 0.8905 11 7 4.0017 -0.5006 -1.1988 12 6 4.0141 -2.6147 -0.0001 13 6 4.0486 -3.3350 -1.1802 14 6 4.5083 -4.6390 -1.1846 15 6 4.9339 -5.2269 -0.0095 16 6 4.8952 -4.5083 1.1785 17 7 5.3198 -5.1014 2.3696 18 6 4.4615 -6.2612 2.7222 19 6 5.3476 -7.0739 3.6993 20 6 6.7627 -6.9133 3.0979 21 6 6.6903 -5.6405 2.2340 22 6 4.4390 -3.1960 1.1782 23 1 -0.4850 0.8400 -0.0004 24 1 3.6785 -0.9576 -2.0383 25 1 3.7322 0.4717 -1.1897 26 1 3.7157 -2.8780 -2.1004 27 1 4.5344 -5.1987 -2.1079 28 1 5.2925 -6.2456 -0.0135 29 1 3.5489 -5.9283 3.2166 30 1 4.2269 -6.8500 1.8353 31 1 5.0495 -8.1223 3.7093 32 1 5.3044 -6.6500 4.7026 33 1 7.0115 -7.7762 2.4802 34 1 7.4994 -6.7902 3.8918 35 1 6.8908 -5.8876 1.1914 36 1 7.4145 -4.9080 2.5906 37 1 4.4118 -2.6329 2.0994 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:32 Heat of formation + Delta-G solvation = 37.364159 kcal Electronic energy + Delta-G solvation = -17622.514791 eV Core-core repulsion = 14978.455154 eV Total energy + Delta-G solvation = -2644.059637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91698 -37.76506 -34.86985 -32.31255 -31.71479 -30.06230 -28.87390 -27.82525 -26.12601 -23.30233 -22.09512 -21.30365 -20.90497 -19.19404 -17.06437 -16.83234 -16.00711 -15.52452 -15.21976 -14.55353 -14.16477 -13.99265 -13.48382 -13.10337 -13.02876 -12.65458 -12.45667 -11.98332 -11.88656 -11.73077 -11.44811 -11.30910 -11.14018 -10.86593 -10.70518 -10.64140 -10.46419 -10.07307 -9.53375 -8.78443 -8.41373 -8.23669 -8.00693 -7.46284 -6.23299 -4.26856 1.87263 2.02515 3.13355 3.28203 3.29087 4.06138 4.23299 4.31871 4.63951 4.77492 4.90018 5.07340 5.28215 5.35795 5.44072 5.45622 5.63570 5.69920 5.72230 5.75916 5.95244 5.97719 5.99694 6.01457 6.09970 6.17840 6.29949 6.61137 6.85679 6.86084 6.94941 7.00771 7.24833 7.43974 7.56077 7.82136 8.06782 8.27744 8.48756 8.84122 9.35695 10.89309 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.005500 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.242315 B = 5089.279759 C = 5290.253315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.073 3.927 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.206 3.794 10 H 0.051 0.949 11 N -0.848 5.848 12 C -0.012 4.012 13 C -0.108 4.108 14 C -0.116 4.116 15 C -0.173 4.173 16 C 0.071 3.929 17 N -0.480 5.480 18 C 0.039 3.961 19 C -0.123 4.123 20 C -0.131 4.131 21 C 0.036 3.964 22 C -0.094 4.094 23 H 0.266 0.734 24 H 0.331 0.669 25 H 0.317 0.683 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.425 -11.650 2.852 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.094 0.906 9 C 0.097 3.903 10 H 0.069 0.931 11 N -0.382 5.382 12 C -0.013 4.013 13 C -0.126 4.126 14 C -0.134 4.134 15 C -0.193 4.193 16 C -0.022 4.022 17 N -0.201 5.201 18 C -0.088 4.088 19 C -0.162 4.162 20 C -0.169 4.169 21 C -0.090 4.090 22 C -0.113 4.113 23 H 0.076 0.924 24 H 0.143 0.857 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.974 -11.306 3.552 16.848 hybrid contribution -0.785 0.464 -0.909 1.288 sum 11.189 -10.843 2.643 15.804 Atomic orbital electron populations 1.69894 1.06212 1.27195 1.49384 1.25032 0.94844 0.99027 0.94149 0.87006 0.80421 0.83810 0.78593 1.20150 1.21731 1.18309 1.21618 0.89520 0.94958 1.52270 0.90576 1.18511 0.93674 0.87446 0.90704 0.93147 1.59736 1.66930 1.05593 1.05913 1.19972 0.92571 0.96716 0.92083 1.20942 0.99542 0.93700 0.98458 1.20878 0.99939 0.95449 0.97177 1.21278 1.04832 0.99429 0.93739 1.18805 1.00864 0.94275 0.88300 1.62361 1.01919 1.26141 1.29686 1.23327 0.96950 0.90426 0.98060 1.22492 0.94502 0.99647 0.99514 1.22410 0.97812 0.97310 0.99356 1.22986 0.91085 0.95871 0.99107 1.20815 0.98876 0.93393 0.98235 0.92372 0.85691 0.86689 0.86300 0.86976 0.87452 0.89741 0.93329 0.91143 0.90664 0.91673 0.91058 0.93107 0.90337 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 20.87 24.61 -169.99 -4.18 16.69 16 4 H -0.27 -6.29 7.01 56.52 0.40 -5.89 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 8 H 0.08 2.32 7.98 -52.49 -0.42 1.91 16 9 C 0.21 4.88 2.48 -70.01 -0.17 4.71 16 10 H 0.05 1.24 7.06 -51.93 -0.37 0.88 16 11 N -0.85 -18.66 8.97 -6.65 -0.06 -18.72 16 12 C -0.01 -0.26 4.89 -104.65 -0.51 -0.77 16 13 C -0.11 -2.08 9.29 -39.55 -0.37 -2.45 16 14 C -0.12 -1.93 10.04 -39.61 -0.40 -2.32 16 15 C -0.17 -2.79 7.90 -39.38 -0.31 -3.10 16 16 C 0.07 1.24 4.86 -83.78 -0.41 0.83 16 17 N -0.48 -7.25 5.28 -167.16 -0.88 -8.14 16 18 C 0.04 0.50 6.43 -1.90 -0.01 0.49 16 19 C -0.12 -1.24 7.06 -24.87 -0.18 -1.42 16 20 C -0.13 -1.27 6.93 -25.37 -0.18 -1.45 16 21 C 0.04 0.45 6.48 -2.76 -0.02 0.43 16 22 C -0.09 -1.87 9.59 -39.38 -0.38 -2.25 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.33 6.86 7.34 -39.29 -0.29 6.57 16 25 H 0.32 7.09 4.29 -39.29 -0.17 6.92 16 26 H 0.12 2.21 6.66 -52.48 -0.35 1.86 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.11 1.50 7.04 -52.49 -0.37 1.13 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.63 7.03 -51.93 -0.36 0.27 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.64 6.30 -51.93 -0.33 0.31 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.12 2.45 8.03 -52.49 -0.42 2.03 16 LS Contribution 291.14 15.07 4.39 4.39 Total: -1.00 -29.73 291.14 -8.52 -38.24 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -5.21 Total: 14.06 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -3.35 Total: -20.66 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.17 Total: -52.72 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.18 Total: 16.69 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.73 -8.52 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.606 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds