Wall clock time and date at job start Mon Mar 30 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99758 * 2 1 4 4 H 1.48501 * 109.47088 * 270.00154 * 3 2 1 5 5 H 1.48504 * 109.46926 * 29.99759 * 3 2 1 6 6 H 1.48500 * 109.47132 * 150.00090 * 3 2 1 7 7 C 1.37877 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00119 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.46896 * 59.99893 * 9 7 2 11 11 N 1.46903 * 109.47079 * 299.99702 * 9 7 2 12 12 C 1.50701 * 109.47073 * 179.97438 * 9 7 2 13 13 C 1.38301 * 119.96301 * 79.99724 * 12 9 7 14 14 C 1.38265 * 120.14969 * 180.02562 * 13 12 9 15 15 C 1.38124 * 120.07665 * 0.04448 * 14 13 12 16 16 C 1.38898 * 119.92427 * 0.23268 * 15 14 13 17 17 N 1.39669 * 120.07988 * 179.74633 * 16 15 14 18 18 C 1.48537 * 110.99755 * 296.81645 * 17 16 15 19 19 C 1.54936 * 103.22532 * 159.71617 * 18 17 16 20 20 C 1.54595 * 102.92438 * 322.58490 * 19 18 17 21 21 C 1.47897 * 110.99863 * 54.20981 * 17 16 15 22 22 C 1.38085 * 119.95953 * 260.02094 * 12 9 7 23 23 H 0.96995 * 120.00375 * 0.02562 * 1 2 3 24 24 H 1.00901 * 111.00072 * 300.00422 * 11 9 7 25 25 H 1.00906 * 110.99668 * 63.95265 * 11 9 7 26 26 H 1.08003 * 119.92724 * 0.02562 * 13 12 9 27 27 H 1.07998 * 119.96723 * 180.02562 * 14 13 12 28 28 H 1.07992 * 120.04370 * 179.97438 * 15 14 13 29 29 H 1.08997 * 110.66759 * 278.15517 * 18 17 16 30 30 H 1.09003 * 110.66744 * 41.28607 * 18 17 16 31 31 H 1.09000 * 110.72468 * 204.22869 * 19 18 17 32 32 H 1.09001 * 110.72352 * 80.94978 * 19 18 17 33 33 H 1.08998 * 110.31216 * 263.03969 * 20 19 18 34 34 H 1.09003 * 110.30626 * 140.86826 * 20 19 18 35 35 H 1.09006 * 109.91778 * 333.51282 * 21 17 16 36 36 H 1.09000 * 109.91921 * 94.80480 * 21 17 16 37 37 H 1.08000 * 120.04157 * 359.97438 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5117 -1.1939 0.0000 10 1 3.8746 -0.6806 0.8905 11 7 4.0017 -0.5006 -1.1988 12 6 4.0141 -2.6147 -0.0001 13 6 4.0486 -3.3350 -1.1802 14 6 4.5083 -4.6390 -1.1846 15 6 4.9339 -5.2269 -0.0095 16 6 4.8952 -4.5083 1.1785 17 7 5.3198 -5.1014 2.3696 18 6 4.4615 -6.2612 2.7222 19 6 5.3476 -7.0739 3.6993 20 6 6.7627 -6.9133 3.0979 21 6 6.6903 -5.6405 2.2340 22 6 4.4390 -3.1960 1.1782 23 1 -0.4850 0.8400 -0.0004 24 1 3.6785 -0.9576 -2.0383 25 1 3.7322 0.4717 -1.1897 26 1 3.7157 -2.8780 -2.1004 27 1 4.5344 -5.1987 -2.1079 28 1 5.2925 -6.2456 -0.0135 29 1 3.5489 -5.9283 3.2166 30 1 4.2269 -6.8500 1.8353 31 1 5.0495 -8.1223 3.7093 32 1 5.3044 -6.6500 4.7026 33 1 7.0115 -7.7762 2.4802 34 1 7.4994 -6.7902 3.8918 35 1 6.8908 -5.8876 1.1914 36 1 7.4145 -4.9080 2.5906 37 1 4.4118 -2.6329 2.0994 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:31 Heat of formation + Delta-G solvation = 16.710830 kcal Electronic energy + Delta-G solvation = -17623.410387 eV Core-core repulsion = 14978.455154 eV Total energy + Delta-G solvation = -2644.955233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15913 -39.08900 -36.59167 -34.07961 -33.18335 -31.58614 -29.80674 -29.10650 -28.13579 -24.93060 -23.40310 -22.71929 -21.76015 -20.63102 -19.12936 -18.23300 -17.35174 -16.86690 -16.71411 -16.16144 -15.75593 -15.10536 -15.03115 -14.63799 -14.32555 -14.15615 -13.69254 -13.65372 -13.32945 -13.04642 -12.88855 -12.72452 -12.37638 -12.22601 -12.06896 -12.03172 -11.86258 -11.50295 -11.42278 -10.93191 -9.78129 -9.57964 -9.44694 -9.22171 -8.41826 -6.50522 0.45595 0.57770 1.22213 1.31295 1.40682 2.19664 2.85927 2.90812 2.98136 3.73009 3.89812 3.91842 4.06472 4.10927 4.16946 4.34577 4.36552 4.52396 4.59180 4.61714 4.68702 4.81426 4.91337 4.98326 5.04326 5.13744 5.14561 5.18688 5.31082 5.37045 5.55918 5.57608 5.78085 5.86943 6.01427 6.04492 6.36927 6.50507 6.55281 6.67930 7.16156 8.74448 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.005500 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.242315 B = 5089.279759 C = 5290.253315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.018 3.982 3 Si 0.939 3.061 4 H -0.252 1.252 5 H -0.290 1.290 6 H -0.250 1.250 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.214 3.786 10 H 0.037 0.963 11 N -0.836 5.836 12 C -0.041 4.041 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.164 4.164 16 C 0.078 3.922 17 N -0.500 5.500 18 C 0.033 3.967 19 C -0.116 4.116 20 C -0.123 4.123 21 C 0.032 3.968 22 C -0.118 4.118 23 H 0.269 0.731 24 H 0.339 0.661 25 H 0.316 0.684 26 H 0.120 0.880 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.671 -13.095 2.502 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.177 1.177 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.586 4.586 8 H 0.049 0.951 9 C 0.104 3.896 10 H 0.055 0.945 11 N -0.370 5.370 12 C -0.042 4.042 13 C -0.143 4.143 14 C -0.126 4.126 15 C -0.184 4.184 16 C -0.016 4.016 17 N -0.222 5.222 18 C -0.093 4.093 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.094 4.094 22 C -0.138 4.138 23 H 0.079 0.921 24 H 0.152 0.848 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.239 -12.770 3.192 19.391 hybrid contribution -1.501 0.773 -0.760 1.851 sum 12.739 -11.997 2.432 17.667 Atomic orbital electron populations 1.70041 1.08119 1.28398 1.51078 1.25893 0.95590 1.02988 0.93632 0.85936 0.79072 0.78717 0.79875 1.17665 1.21736 1.17451 1.21798 0.91741 0.93250 1.51810 0.95130 1.18278 0.90977 0.89524 0.90786 0.94465 1.59677 1.66268 1.05405 1.05618 1.19857 0.94847 0.95877 0.93658 1.21053 1.00475 0.95056 0.97674 1.21237 0.98092 0.94361 0.98880 1.21611 1.03377 1.00532 0.92843 1.18919 0.99441 0.93358 0.89879 1.62326 1.03629 1.27604 1.28659 1.23403 0.96863 0.90103 0.98921 1.22485 0.94008 1.00348 0.98521 1.22406 0.97788 0.96360 0.99508 1.23083 0.89240 0.97135 0.99949 1.20830 1.00629 0.94973 0.97338 0.92142 0.84808 0.86798 0.86216 0.83454 0.84338 0.91240 0.93000 0.88835 0.90755 0.89778 0.89678 0.92895 0.90704 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 2 C 0.02 1.05 5.47 84.65 0.46 1.51 16 3 Si 0.94 43.41 24.61 68.60 1.69 45.10 16 4 H -0.25 -10.65 7.01 99.48 0.70 -9.96 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.55 -31.36 9.28 25.60 0.24 -31.13 16 8 H 0.03 1.98 7.98 -2.91 -0.02 1.95 16 9 C 0.21 10.40 2.48 43.42 0.11 10.51 16 10 H 0.04 1.89 7.06 -2.39 -0.02 1.87 16 11 N -0.84 -36.39 8.97 -174.95 -1.57 -37.96 16 12 C -0.04 -1.80 4.89 -19.89 -0.10 -1.90 16 13 C -0.12 -4.73 9.29 22.29 0.21 -4.53 16 14 C -0.11 -3.33 10.04 22.25 0.22 -3.11 16 15 C -0.16 -4.88 7.90 22.40 0.18 -4.71 16 16 C 0.08 2.66 4.86 38.22 0.19 2.84 16 17 N -0.50 -14.56 5.28 -682.76 -3.60 -18.16 16 18 C 0.03 0.81 6.43 86.65 0.56 1.36 16 19 C -0.12 -1.99 7.06 31.80 0.22 -1.77 16 20 C -0.12 -1.95 6.93 31.47 0.22 -1.73 16 21 C 0.03 0.72 6.48 86.45 0.56 1.29 16 22 C -0.12 -4.84 9.59 22.40 0.21 -4.63 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.34 13.89 7.34 -89.69 -0.66 13.23 16 25 H 0.32 13.71 4.29 -89.69 -0.39 13.32 16 26 H 0.12 4.42 6.66 -2.91 -0.02 4.40 16 27 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.14 3.28 7.04 -2.91 -0.02 3.26 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.22 7.03 -2.39 -0.02 1.21 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.16 6.30 -2.38 -0.02 1.15 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 4.60 8.03 -2.91 -0.02 4.58 16 Total: -1.00 -66.44 291.14 0.06 -66.38 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.03 Total: 38.25 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 3.28 Total: -35.97 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.87 Total: -113.75 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.69 Total: 45.10 kcal Total: -66.44 0.06 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.091 kcal (2) G-P(sol) polarization free energy of solvation -66.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds