Wall clock time and date at job start Mon Mar 30 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99734 * 2 1 4 4 H 1.48503 * 109.47287 * 240.00167 * 3 2 1 5 5 H 1.48508 * 109.47435 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47314 * 120.00043 * 3 2 1 7 7 C 1.37879 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99867 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47067 * 300.00019 * 9 7 2 11 11 N 1.46898 * 109.47442 * 59.99645 * 9 7 2 12 12 C 1.50693 * 109.47101 * 180.02562 * 9 7 2 13 13 C 1.38128 * 120.03985 * 269.78579 * 12 9 7 14 14 C 1.38267 * 120.07723 * 179.97438 * 13 12 9 15 15 C 1.38308 * 120.14772 * 0.02562 * 14 13 12 16 16 C 1.38078 * 120.07648 * 359.74688 * 15 14 13 17 17 C 1.38893 * 120.04100 * 89.76509 * 12 9 7 18 18 N 1.39684 * 120.07148 * 359.97438 * 17 12 9 19 19 C 1.47902 * 110.99909 * 294.19902 * 18 17 12 20 20 C 1.53994 * 107.05295 * 214.15553 * 19 18 17 21 21 C 1.54590 * 105.14210 * 1.22543 * 20 19 18 22 22 C 1.48533 * 110.99973 * 176.80144 * 18 17 12 23 23 H 0.96994 * 120.00676 * 0.02562 * 1 2 3 24 24 H 1.00904 * 111.00388 * 296.04607 * 11 9 7 25 25 H 1.00902 * 110.99645 * 60.00472 * 11 9 7 26 26 H 1.08001 * 119.95731 * 359.97438 * 13 12 9 27 27 H 1.07995 * 119.92124 * 180.02562 * 14 13 12 28 28 H 1.08003 * 119.95832 * 180.02562 * 15 14 13 29 29 H 1.08007 * 120.03828 * 180.26848 * 16 15 14 30 30 H 1.08993 * 109.91597 * 94.80248 * 19 18 17 31 31 H 1.08997 * 109.91412 * 333.50437 * 19 18 17 32 32 H 1.09006 * 110.30882 * 120.14380 * 20 19 18 33 33 H 1.08999 * 110.30830 * 242.30553 * 20 19 18 34 34 H 1.09005 * 110.72489 * 140.31867 * 21 20 19 35 35 H 1.09002 * 110.72498 * 263.59845 * 21 20 19 36 36 H 1.09001 * 110.66819 * 41.28550 * 22 18 17 37 37 H 1.09003 * 110.66539 * 278.16055 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8880 11 7 0.4069 -2.5762 -1.2014 12 6 2.2303 -3.6445 -0.0015 13 6 2.6772 -4.1725 -1.1971 14 6 3.5761 -5.2231 -1.1978 15 6 4.0305 -5.7492 -0.0021 16 6 3.5915 -5.2232 1.1967 17 6 2.6850 -4.1704 1.2010 18 7 2.2359 -3.6383 2.4119 19 6 2.7037 -2.2459 2.5850 20 6 2.9622 -2.0399 4.0890 21 6 2.6435 -3.4035 4.7440 22 6 2.7874 -4.3968 3.5638 23 1 -0.4851 0.8399 -0.0004 24 1 -0.3005 -1.8567 -1.1927 25 1 0.9652 -2.5243 -2.0403 26 1 2.3240 -3.7641 -2.1325 27 1 3.9242 -5.6336 -2.1340 28 1 4.7330 -6.5696 -0.0062 29 1 3.9501 -5.6317 2.1300 30 1 1.9372 -1.5513 2.2414 31 1 3.6261 -2.0918 2.0251 32 1 4.0049 -1.7724 4.2605 33 1 2.3027 -1.2672 4.4839 34 1 3.3634 -3.6315 5.5301 35 1 1.6264 -3.4149 5.1358 36 1 3.8354 -4.6445 3.3950 37 1 2.2025 -5.2984 3.7461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:40 Heat of formation + Delta-G solvation = 36.918736 kcal Electronic energy + Delta-G solvation = -18521.904947 eV Core-core repulsion = 15877.825995 eV Total energy + Delta-G solvation = -2644.078952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.83023 -37.14493 -34.71266 -32.10807 -31.59168 -29.39459 -28.29383 -27.70098 -25.88783 -23.05957 -22.46139 -20.48403 -19.94610 -19.43411 -16.83663 -16.46861 -15.58035 -15.20385 -14.67427 -14.51890 -13.79640 -13.64613 -13.22497 -12.90617 -12.58497 -12.31799 -12.07438 -11.71212 -11.47222 -11.37929 -11.09402 -10.96992 -10.90534 -10.70755 -10.57483 -10.26838 -10.08801 -9.95725 -9.46380 -8.85756 -8.54615 -7.96403 -7.24835 -7.04885 -6.05925 -4.21720 2.09059 2.21153 3.21620 3.27928 3.30638 4.28484 4.40521 4.69075 5.01980 5.09946 5.14189 5.32926 5.48919 5.56997 5.73614 5.76640 5.87662 6.02359 6.06780 6.12201 6.20844 6.23294 6.40621 6.48588 6.62310 6.69397 6.75732 6.97108 7.07936 7.11690 7.30333 7.51373 7.67351 7.73515 7.83603 8.12440 8.15044 8.70824 8.98911 9.17232 9.47025 10.89566 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.010648 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.478328 B = 2628.928937 C = 3633.728592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.243 3.757 10 H 0.062 0.938 11 N -0.851 5.851 12 C -0.036 4.036 13 C -0.096 4.096 14 C -0.149 4.149 15 C -0.128 4.128 16 C -0.178 4.178 17 C 0.093 3.907 18 N -0.462 5.462 19 C 0.045 3.955 20 C -0.135 4.135 21 C -0.122 4.122 22 C 0.027 3.973 23 H 0.266 0.734 24 H 0.355 0.645 25 H 0.308 0.692 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.162 -6.257 4.733 9.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.070 0.930 9 C 0.133 3.867 10 H 0.079 0.921 11 N -0.381 5.381 12 C -0.039 4.039 13 C -0.115 4.115 14 C -0.167 4.167 15 C -0.147 4.147 16 C -0.199 4.199 17 C -0.004 4.004 18 N -0.178 5.178 19 C -0.080 4.080 20 C -0.173 4.173 21 C -0.161 4.161 22 C -0.100 4.100 23 H 0.076 0.924 24 H 0.171 0.829 25 H 0.118 0.882 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.176 -6.823 5.060 9.947 hybrid contribution 1.772 1.881 -0.255 2.597 sum 6.948 -4.941 4.804 9.786 Atomic orbital electron populations 1.69736 1.05714 1.27170 1.50219 1.24968 0.94854 0.98917 0.94768 0.86701 0.79683 0.83169 0.78769 1.20342 1.21227 1.20111 1.21742 0.93323 0.91039 1.51418 0.92997 1.17999 0.89155 0.87576 0.91957 0.92067 1.59549 1.18502 1.56053 1.04033 1.20222 0.96587 0.96652 0.90391 1.20860 0.96602 0.95873 0.98183 1.20965 1.00076 0.98520 0.97186 1.20697 1.01085 1.00333 0.92542 1.21219 0.99551 1.00981 0.98116 1.18890 0.94553 0.96193 0.90801 1.61866 1.52884 1.03277 0.99762 1.23292 1.01630 0.89234 0.93846 1.22512 1.00916 0.97492 0.96430 1.22464 1.01822 0.94932 0.96839 1.23421 0.98443 0.97476 0.90709 0.92438 0.82931 0.88202 0.86226 0.87370 0.87455 0.86504 0.86142 0.93515 0.92198 0.91142 0.91587 0.90882 0.92993 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.83 11.54 55.43 0.64 -23.19 16 2 C 0.07 1.75 5.38 -17.82 -0.10 1.65 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -13.71 5.66 -34.44 -0.19 -13.90 16 8 H 0.05 1.37 7.40 -52.49 -0.39 0.98 16 9 C 0.24 5.99 2.19 -70.02 -0.15 5.84 16 10 H 0.06 1.70 6.92 -51.93 -0.36 1.34 16 11 N -0.85 -20.47 8.88 -6.65 -0.06 -20.53 16 12 C -0.04 -0.81 4.89 -104.42 -0.51 -1.32 16 13 C -0.10 -1.95 9.28 -39.61 -0.37 -2.32 16 14 C -0.15 -2.62 10.04 -39.55 -0.40 -3.02 16 15 C -0.13 -2.15 10.04 -39.61 -0.40 -2.55 16 16 C -0.18 -3.19 8.90 -39.38 -0.35 -3.54 16 17 C 0.09 1.92 5.23 -83.78 -0.44 1.48 16 18 N -0.46 -9.05 4.60 -167.17 -0.77 -9.82 16 19 C 0.04 0.88 4.64 -2.75 -0.01 0.87 16 20 C -0.14 -2.13 6.93 -25.38 -0.18 -2.31 16 21 C -0.12 -1.69 7.06 -24.88 -0.18 -1.86 16 22 C 0.03 0.41 5.55 -1.90 -0.01 0.40 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.35 9.07 7.08 -39.29 -0.28 8.79 16 25 H 0.31 7.02 7.19 -39.29 -0.28 6.74 16 26 H 0.12 2.36 6.37 -52.49 -0.33 2.02 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.12 1.81 5.58 -52.48 -0.29 1.51 16 30 H 0.12 2.81 5.51 -51.93 -0.29 2.52 16 31 H 0.05 0.98 7.34 -51.93 -0.38 0.60 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.76 5.96 -51.93 -0.31 0.45 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -26.87 286.16 -9.18 -36.05 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -5.01 Total: 18.37 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.28 Total: -20.56 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.19 Total: -53.55 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.87 -9.18 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.974 kcal (2) G-P(sol) polarization free energy of solvation -26.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds