Wall clock time and date at job start Mon Mar 30 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99734 * 2 1 4 4 H 1.48503 * 109.47287 * 240.00167 * 3 2 1 5 5 H 1.48508 * 109.47435 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47314 * 120.00043 * 3 2 1 7 7 C 1.37879 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99867 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47067 * 300.00019 * 9 7 2 11 11 N 1.46898 * 109.47442 * 59.99645 * 9 7 2 12 12 C 1.50693 * 109.47101 * 180.02562 * 9 7 2 13 13 C 1.38128 * 120.03985 * 269.78579 * 12 9 7 14 14 C 1.38267 * 120.07723 * 179.97438 * 13 12 9 15 15 C 1.38308 * 120.14772 * 0.02562 * 14 13 12 16 16 C 1.38078 * 120.07648 * 359.74688 * 15 14 13 17 17 C 1.38893 * 120.04100 * 89.76509 * 12 9 7 18 18 N 1.39684 * 120.07148 * 359.97438 * 17 12 9 19 19 C 1.47902 * 110.99909 * 294.19902 * 18 17 12 20 20 C 1.53994 * 107.05295 * 214.15553 * 19 18 17 21 21 C 1.54590 * 105.14210 * 1.22543 * 20 19 18 22 22 C 1.48533 * 110.99973 * 176.80144 * 18 17 12 23 23 H 0.96994 * 120.00676 * 0.02562 * 1 2 3 24 24 H 1.00904 * 111.00388 * 296.04607 * 11 9 7 25 25 H 1.00902 * 110.99645 * 60.00472 * 11 9 7 26 26 H 1.08001 * 119.95731 * 359.97438 * 13 12 9 27 27 H 1.07995 * 119.92124 * 180.02562 * 14 13 12 28 28 H 1.08003 * 119.95832 * 180.02562 * 15 14 13 29 29 H 1.08007 * 120.03828 * 180.26848 * 16 15 14 30 30 H 1.08993 * 109.91597 * 94.80248 * 19 18 17 31 31 H 1.08997 * 109.91412 * 333.50437 * 19 18 17 32 32 H 1.09006 * 110.30882 * 120.14380 * 20 19 18 33 33 H 1.08999 * 110.30830 * 242.30553 * 20 19 18 34 34 H 1.09005 * 110.72489 * 140.31867 * 21 20 19 35 35 H 1.09002 * 110.72498 * 263.59845 * 21 20 19 36 36 H 1.09001 * 110.66819 * 41.28550 * 22 18 17 37 37 H 1.09003 * 110.66539 * 278.16055 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8880 11 7 0.4069 -2.5762 -1.2014 12 6 2.2303 -3.6445 -0.0015 13 6 2.6772 -4.1725 -1.1971 14 6 3.5761 -5.2231 -1.1978 15 6 4.0305 -5.7492 -0.0021 16 6 3.5915 -5.2232 1.1967 17 6 2.6850 -4.1704 1.2010 18 7 2.2359 -3.6383 2.4119 19 6 2.7037 -2.2459 2.5850 20 6 2.9622 -2.0399 4.0890 21 6 2.6435 -3.4035 4.7440 22 6 2.7874 -4.3968 3.5638 23 1 -0.4851 0.8399 -0.0004 24 1 -0.3005 -1.8567 -1.1927 25 1 0.9652 -2.5243 -2.0403 26 1 2.3240 -3.7641 -2.1325 27 1 3.9242 -5.6336 -2.1340 28 1 4.7330 -6.5696 -0.0062 29 1 3.9501 -5.6317 2.1300 30 1 1.9372 -1.5513 2.2414 31 1 3.6261 -2.0918 2.0251 32 1 4.0049 -1.7724 4.2605 33 1 2.3027 -1.2672 4.4839 34 1 3.3634 -3.6315 5.5301 35 1 1.6264 -3.4149 5.1358 36 1 3.8354 -4.6445 3.3950 37 1 2.2025 -5.2984 3.7461 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:40 Heat of formation + Delta-G solvation = 19.882193 kcal Electronic energy + Delta-G solvation = -18522.643707 eV Core-core repulsion = 15877.825995 eV Total energy + Delta-G solvation = -2644.817712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.27935 -38.55259 -36.55949 -33.56792 -33.37921 -31.00431 -29.69436 -29.15555 -27.80483 -24.71899 -23.90252 -21.94241 -21.38435 -20.92566 -18.52462 -18.24979 -16.98779 -16.82520 -16.30589 -16.12947 -15.31339 -15.16670 -14.85207 -14.54746 -14.05145 -13.85433 -13.69978 -13.15203 -13.05618 -12.94011 -12.80827 -12.66743 -12.44393 -12.15201 -12.03310 -11.95299 -11.64320 -11.39026 -11.21251 -10.69706 -10.17864 -9.50053 -9.14868 -8.62188 -8.04270 -6.27628 0.63215 0.73326 1.35850 1.37768 1.44647 2.37165 2.95138 3.10050 3.28460 3.77655 3.86090 4.11514 4.16476 4.23481 4.35119 4.44283 4.55052 4.63382 4.73889 4.83365 4.90574 4.91956 5.01422 5.07396 5.13071 5.23237 5.28433 5.40125 5.47291 5.62678 5.66729 5.80662 5.97552 6.05458 6.10884 6.30503 6.64112 6.70418 6.99873 7.15560 7.43643 8.87825 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.010648 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.478328 B = 2628.928937 C = 3633.728592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.038 0.962 9 C 0.255 3.745 10 H 0.019 0.981 11 N -0.847 5.847 12 C -0.077 4.077 13 C -0.113 4.113 14 C -0.147 4.147 15 C -0.117 4.117 16 C -0.178 4.178 17 C 0.076 3.924 18 N -0.485 5.485 19 C 0.053 3.947 20 C -0.132 4.132 21 C -0.112 4.112 22 C 0.025 3.975 23 H 0.265 0.735 24 H 0.344 0.656 25 H 0.315 0.685 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.373 -7.837 5.660 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.057 0.943 9 C 0.145 3.855 10 H 0.037 0.963 11 N -0.376 5.376 12 C -0.079 4.079 13 C -0.132 4.132 14 C -0.166 4.166 15 C -0.135 4.135 16 C -0.198 4.198 17 C -0.022 4.022 18 N -0.202 5.202 19 C -0.072 4.072 20 C -0.170 4.170 21 C -0.150 4.150 22 C -0.101 4.101 23 H 0.074 0.926 24 H 0.158 0.842 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.159 0.841 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.399 -8.418 5.989 12.707 hybrid contribution 1.095 2.283 -0.556 2.593 sum 8.495 -6.135 5.433 11.803 Atomic orbital electron populations 1.69840 1.06785 1.27645 1.51175 1.25583 0.95517 1.01614 0.94644 0.85820 0.78570 0.79833 0.78695 1.20210 1.20930 1.19689 1.21754 0.92509 0.91978 1.50791 0.94343 1.17664 0.88936 0.88748 0.90178 0.96307 1.59529 1.18389 1.55339 1.04380 1.20156 0.97964 0.97374 0.92401 1.20966 0.97799 0.97171 0.97234 1.21310 0.98790 0.97239 0.99245 1.21202 1.00418 1.00375 0.91542 1.21568 0.98381 0.99819 1.00050 1.19121 0.95374 0.97200 0.90508 1.61757 1.53991 1.03467 1.00936 1.22957 0.98767 0.89082 0.96405 1.22494 1.02061 0.98994 0.93469 1.22471 1.02890 0.92743 0.96884 1.23565 0.99195 0.97792 0.89569 0.92551 0.84186 0.87488 0.86753 0.84148 0.83281 0.83667 0.90761 0.95664 0.90321 0.91296 0.87999 0.90986 0.91558 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.00 11.54 21.45 0.25 -50.75 16 2 C 0.03 1.41 5.38 84.66 0.46 1.87 16 3 Si 0.94 42.87 29.54 68.60 2.03 44.90 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -28.43 5.66 25.60 0.14 -28.28 16 8 H 0.04 2.12 7.40 -2.92 -0.02 2.10 16 9 C 0.25 13.23 2.19 43.42 0.10 13.33 16 10 H 0.02 1.13 6.92 -2.38 -0.02 1.12 16 11 N -0.85 -42.69 8.88 -174.96 -1.55 -44.24 16 12 C -0.08 -3.51 4.89 -19.74 -0.10 -3.60 16 13 C -0.11 -4.57 9.28 22.25 0.21 -4.36 16 14 C -0.15 -4.80 10.04 22.29 0.22 -4.58 16 15 C -0.12 -3.48 10.04 22.25 0.22 -3.26 16 16 C -0.18 -5.88 8.90 22.40 0.20 -5.68 16 17 C 0.08 3.10 5.23 38.21 0.20 3.30 16 18 N -0.49 -19.14 4.60 -682.79 -3.14 -22.28 16 19 C 0.05 2.17 4.64 86.45 0.40 2.57 16 20 C -0.13 -4.03 6.93 31.47 0.22 -3.81 16 21 C -0.11 -2.80 7.06 31.79 0.22 -2.57 16 22 C 0.03 0.72 5.55 86.65 0.48 1.20 16 23 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 24 H 0.34 18.46 7.08 -89.69 -0.63 17.83 16 25 H 0.31 14.93 7.19 -89.69 -0.64 14.29 16 26 H 0.11 4.58 6.37 -2.91 -0.02 4.57 16 27 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.15 3.89 5.58 -2.91 -0.02 3.87 16 30 H 0.07 3.70 5.51 -2.39 -0.01 3.68 16 31 H 0.02 1.09 7.34 -2.39 -0.02 1.07 16 32 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.71 5.96 -2.39 -0.01 1.69 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -61.09 286.16 0.37 -60.73 By element: Atomic # 1 Polarization: 45.71 SS G_CDS: -0.19 Total: 45.52 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 2.98 Total: -33.88 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -4.45 Total: -117.26 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -61.09 0.37 -60.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.607 kcal (2) G-P(sol) polarization free energy of solvation -61.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds