Wall clock time and date at job start Mon Mar 30 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99814 * 2 1 4 4 C 1.38638 * 119.95347 * 359.91847 * 3 2 1 5 5 C 1.38121 * 119.87580 * 179.97438 * 4 3 2 6 6 C 1.38176 * 119.99434 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.83269 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47015 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47739 * 300.02933 * 7 6 5 10 10 C 1.50707 * 109.46912 * 60.03039 * 7 6 5 11 11 H 1.07998 * 119.99513 * 359.97438 * 10 7 6 12 12 C 1.37872 * 120.00075 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00073 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00145 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47372 * 89.99761 * 14 12 10 16 16 H 1.48503 * 109.47342 * 209.99779 * 14 12 10 17 17 H 1.48506 * 109.47139 * 329.99741 * 14 12 10 18 18 C 1.38502 * 120.33197 * 0.02749 * 6 5 4 19 19 C 1.38166 * 119.88377 * 359.97438 * 18 6 5 20 20 C 1.51357 * 109.77635 * 179.97438 * 19 18 6 21 21 C 1.54345 * 105.16965 * 342.82227 * 20 19 18 22 22 C 1.51680 * 130.28121 * 179.78237 * 18 6 5 23 23 H 1.09001 * 109.46995 * 299.99783 * 1 2 3 24 24 H 1.08998 * 109.46719 * 59.99911 * 1 2 3 25 25 H 1.08995 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.06367 * 0.04481 * 4 3 2 27 27 H 1.07999 * 120.00416 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.47061 * 59.99182 * 9 7 6 29 29 H 1.08996 * 109.47465 * 180.02562 * 9 7 6 30 30 H 1.09005 * 109.46680 * 300.00049 * 9 7 6 31 31 H 0.97003 * 120.00016 * 179.97438 * 13 12 10 32 32 H 1.09007 * 110.30413 * 223.89809 * 20 19 18 33 33 H 1.08999 * 110.38802 * 101.78819 * 20 19 18 34 34 H 1.09002 * 110.82474 * 144.55930 * 21 20 19 35 35 H 1.08996 * 110.82478 * 267.91874 * 21 20 19 36 36 H 1.09001 * 110.25972 * 78.28295 * 22 18 6 37 37 H 1.09007 * 110.50073 * 316.03638 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2899 2.3730 -0.0017 5 6 1.9186 3.6028 -0.0012 6 6 3.2986 3.6732 0.0005 7 6 3.9807 5.0169 0.0005 8 1 5.0615 4.8757 0.0015 9 6 3.5696 5.7977 -1.2493 10 6 3.5736 5.7869 1.2304 11 1 2.8891 5.3472 1.9407 12 6 4.0743 7.0529 1.4483 13 7 4.9075 7.5884 0.5831 14 14 3.5691 8.0076 2.9723 15 1 4.5158 7.7125 4.0777 16 1 3.5927 9.4624 2.6756 17 1 2.1971 7.6068 3.3754 18 6 4.0580 2.5149 0.0011 19 6 3.4336 1.2824 0.0006 20 6 4.4728 0.1819 0.0008 21 6 5.7850 0.8654 -0.4384 22 6 5.5634 2.3292 -0.0015 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2113 2.3167 -0.0023 27 1 1.3317 4.5094 -0.0021 28 1 2.4887 5.9389 -1.2503 29 1 4.0633 6.7695 -1.2495 30 1 3.8640 5.2408 -2.1388 31 1 5.2594 8.4793 0.7362 32 1 4.1972 -0.5987 -0.7084 33 1 4.5813 -0.2378 1.0009 34 1 6.6402 0.4318 0.0799 35 1 5.9141 0.7985 -1.5187 36 1 5.9654 2.4909 0.9987 37 1 6.0308 3.0106 -0.7124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:55 Heat of formation + Delta-G solvation = -31.400374 kcal Electronic energy + Delta-G solvation = -17917.872343 eV Core-core repulsion = 15238.538100 eV Total energy + Delta-G solvation = -2679.334242 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.05268 -37.91608 -35.48906 -33.63125 -31.22466 -29.03909 -28.48548 -26.85790 -26.12907 -25.07805 -22.34723 -21.08032 -20.31601 -18.98510 -17.13264 -16.34668 -15.74209 -15.52610 -14.96526 -14.75945 -13.98225 -13.83206 -13.35542 -12.80860 -12.41478 -12.36685 -11.99466 -11.89207 -11.59805 -11.33162 -11.09554 -11.00688 -10.88312 -10.75772 -10.68988 -10.54323 -10.36035 -10.02098 -9.89362 -9.31567 -8.91076 -8.34180 -7.92984 -7.23196 -5.98522 -4.04825 1.96932 2.18292 3.30530 3.37235 3.40849 3.65981 4.36882 4.50408 4.89716 5.07003 5.21250 5.28742 5.31927 5.35990 5.42881 5.57190 5.67274 5.76492 6.01576 6.04114 6.15307 6.17838 6.31209 6.36186 6.50848 6.57603 6.68787 6.88114 6.94707 7.02206 7.22715 7.25944 7.39103 7.49626 7.74928 7.91636 8.02994 8.13252 8.44180 8.97922 9.59436 11.06880 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.006980 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.509552 B = 4010.218971 C = 4608.170380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.107 3.893 4 C -0.211 4.211 5 C -0.075 4.075 6 C -0.052 4.052 7 C 0.074 3.926 8 H 0.036 0.964 9 C -0.132 4.132 10 C -0.505 4.505 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.067 4.067 19 C -0.136 4.136 20 C -0.065 4.065 21 C -0.121 4.121 22 C -0.077 4.077 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.007 0.993 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -12.330 -2.304 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.063 3.937 4 C -0.230 4.230 5 C -0.093 4.093 6 C -0.052 4.052 7 C 0.056 3.944 8 H 0.054 0.946 9 C -0.190 4.190 10 C -0.543 4.543 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.067 4.067 19 C -0.137 4.137 20 C -0.102 4.102 21 C -0.158 4.158 22 C -0.114 4.114 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.646 -12.351 -2.336 13.088 hybrid contribution -0.726 0.815 0.914 1.424 sum -4.372 -11.536 -1.422 12.419 Atomic orbital electron populations 1.22908 0.79594 1.02878 1.01070 1.85998 1.20372 1.27782 1.89752 1.18397 0.90588 0.83714 1.01015 1.21039 0.98998 0.92509 1.10411 1.20768 0.94498 0.96281 0.97754 1.20151 0.92957 0.96188 0.95876 1.17817 0.95484 0.86523 0.94620 0.94561 1.21791 0.99227 1.02624 0.95322 1.21144 1.27420 0.99881 1.05862 0.92602 1.24948 0.95049 0.97524 0.96417 1.69886 1.31658 1.16152 1.35231 0.86618 0.79017 0.79105 0.83424 1.20711 1.21245 1.19958 1.20336 0.95299 0.91833 0.99269 1.19684 0.90218 0.96218 1.07569 1.20791 0.92351 0.95892 1.01150 1.22308 0.96958 0.95599 1.00961 1.21028 0.92072 0.96034 1.02243 0.93092 0.93143 0.89081 0.86371 0.85643 0.95433 0.89710 0.97371 0.93014 0.91586 0.91181 0.91116 0.91404 0.90243 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.21 10.44 -19.42 -0.20 -5.41 16 3 C 0.11 1.94 6.69 -39.17 -0.26 1.68 16 4 C -0.21 -3.81 9.03 -39.48 -0.36 -4.17 16 5 C -0.07 -1.55 8.68 -39.65 -0.34 -1.89 16 6 C -0.05 -1.15 4.75 -104.55 -0.50 -1.64 16 7 C 0.07 1.85 2.47 -92.92 -0.23 1.62 16 8 H 0.04 0.97 6.88 -51.93 -0.36 0.61 16 9 C -0.13 -3.20 8.78 37.16 0.33 -2.88 16 10 C -0.50 -13.78 8.24 -34.44 -0.28 -14.07 16 11 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 12 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 13 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.07 -1.36 6.02 -104.07 -0.63 -1.98 16 19 C -0.14 -2.53 6.11 -104.06 -0.64 -3.17 16 20 C -0.06 -0.98 6.71 -26.86 -0.18 -1.16 16 21 C -0.12 -1.69 7.07 -25.31 -0.18 -1.87 16 22 C -0.08 -1.33 5.97 -26.69 -0.16 -1.49 16 23 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 24 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.12 1.79 6.29 -52.48 -0.33 1.46 16 27 H 0.13 2.58 7.56 -52.49 -0.40 2.18 16 28 H 0.03 0.63 7.37 -51.93 -0.38 0.25 16 29 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.35 7.77 -51.92 -0.40 0.95 16 LS Contribution 298.39 15.07 4.50 4.50 Total: -1.00 -29.44 298.39 -8.10 -37.54 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.47 Total: -0.26 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: -2.53 Total: -28.07 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.63 Total: -24.55 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.20 Total: -5.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.44 -8.10 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.144 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds