Wall clock time and date at job start Mon Mar 30 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99814 * 2 1 4 4 C 1.38638 * 119.95347 * 359.91847 * 3 2 1 5 5 C 1.38121 * 119.87580 * 179.97438 * 4 3 2 6 6 C 1.38176 * 119.99434 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.83269 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47015 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47739 * 300.02933 * 7 6 5 10 10 C 1.50707 * 109.46912 * 60.03039 * 7 6 5 11 11 H 1.07998 * 119.99513 * 359.97438 * 10 7 6 12 12 C 1.37872 * 120.00075 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00073 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00145 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47372 * 89.99761 * 14 12 10 16 16 H 1.48503 * 109.47342 * 209.99779 * 14 12 10 17 17 H 1.48506 * 109.47139 * 329.99741 * 14 12 10 18 18 C 1.38502 * 120.33197 * 0.02749 * 6 5 4 19 19 C 1.38166 * 119.88377 * 359.97438 * 18 6 5 20 20 C 1.51357 * 109.77635 * 179.97438 * 19 18 6 21 21 C 1.54345 * 105.16965 * 342.82227 * 20 19 18 22 22 C 1.51680 * 130.28121 * 179.78237 * 18 6 5 23 23 H 1.09001 * 109.46995 * 299.99783 * 1 2 3 24 24 H 1.08998 * 109.46719 * 59.99911 * 1 2 3 25 25 H 1.08995 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.06367 * 0.04481 * 4 3 2 27 27 H 1.07999 * 120.00416 * 180.02562 * 5 4 3 28 28 H 1.09000 * 109.47061 * 59.99182 * 9 7 6 29 29 H 1.08996 * 109.47465 * 180.02562 * 9 7 6 30 30 H 1.09005 * 109.46680 * 300.00049 * 9 7 6 31 31 H 0.97003 * 120.00016 * 179.97438 * 13 12 10 32 32 H 1.09007 * 110.30413 * 223.89809 * 20 19 18 33 33 H 1.08999 * 110.38802 * 101.78819 * 20 19 18 34 34 H 1.09002 * 110.82474 * 144.55930 * 21 20 19 35 35 H 1.08996 * 110.82478 * 267.91874 * 21 20 19 36 36 H 1.09001 * 110.25972 * 78.28295 * 22 18 6 37 37 H 1.09007 * 110.50073 * 316.03638 * 22 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2899 2.3730 -0.0017 5 6 1.9186 3.6028 -0.0012 6 6 3.2986 3.6732 0.0005 7 6 3.9807 5.0169 0.0005 8 1 5.0615 4.8757 0.0015 9 6 3.5696 5.7977 -1.2493 10 6 3.5736 5.7869 1.2304 11 1 2.8891 5.3472 1.9407 12 6 4.0743 7.0529 1.4483 13 7 4.9075 7.5884 0.5831 14 14 3.5691 8.0076 2.9723 15 1 4.5158 7.7125 4.0777 16 1 3.5927 9.4624 2.6756 17 1 2.1971 7.6068 3.3754 18 6 4.0580 2.5149 0.0011 19 6 3.4336 1.2824 0.0006 20 6 4.4728 0.1819 0.0008 21 6 5.7850 0.8654 -0.4384 22 6 5.5634 2.3292 -0.0015 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.2113 2.3167 -0.0023 27 1 1.3317 4.5094 -0.0021 28 1 2.4887 5.9389 -1.2503 29 1 4.0633 6.7695 -1.2495 30 1 3.8640 5.2408 -2.1388 31 1 5.2594 8.4793 0.7362 32 1 4.1972 -0.5987 -0.7084 33 1 4.5813 -0.2378 1.0009 34 1 6.6402 0.4318 0.0799 35 1 5.9141 0.7985 -1.5187 36 1 5.9654 2.4909 0.9987 37 1 6.0308 3.0106 -0.7124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:54 Heat of formation + Delta-G solvation = -46.427051 kcal Electronic energy + Delta-G solvation = -17918.523948 eV Core-core repulsion = 15238.538100 eV Total energy + Delta-G solvation = -2679.985848 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.44006 -39.20293 -37.06836 -35.36759 -33.06773 -30.45541 -29.94151 -27.95819 -27.55190 -27.16948 -23.99392 -22.44645 -21.75183 -20.56713 -18.50698 -18.17336 -17.25237 -16.81323 -16.66320 -16.05699 -15.54501 -15.08993 -14.88127 -14.67939 -13.88486 -13.65678 -13.45982 -13.41068 -13.16741 -12.84743 -12.78907 -12.76258 -12.38343 -12.27732 -12.18075 -11.97223 -11.87532 -11.69499 -11.41703 -11.13475 -10.90190 -10.44389 -9.37580 -8.74741 -8.07665 -6.21812 0.48865 0.67273 1.40043 1.41047 1.51061 2.42687 2.50163 2.91937 3.19104 3.59529 3.77963 4.13402 4.19343 4.22909 4.39076 4.43521 4.46655 4.55639 4.68720 4.74643 4.83611 4.88362 4.95141 4.98275 5.05748 5.10567 5.16586 5.27305 5.35454 5.38757 5.50979 5.53431 5.68257 5.71379 5.97362 6.09567 6.14564 6.40075 6.59030 6.86655 7.45496 8.95940 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.006980 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.509552 B = 4010.218971 C = 4608.170380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.110 3.890 4 C -0.207 4.207 5 C -0.089 4.089 6 C -0.084 4.084 7 C 0.077 3.923 8 H 0.009 0.991 9 C -0.121 4.121 10 C -0.519 4.519 11 H 0.047 0.953 12 C 0.015 3.985 13 N -0.916 5.916 14 Si 0.951 3.049 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.270 1.270 18 C -0.086 4.086 19 C -0.145 4.145 20 C -0.062 4.062 21 C -0.108 4.108 22 C -0.081 4.081 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.123 0.877 26 H 0.148 0.852 27 H 0.116 0.884 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.020 0.980 31 H 0.261 0.739 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 -14.405 -1.944 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.065 3.935 4 C -0.226 4.226 5 C -0.108 4.108 6 C -0.085 4.085 7 C 0.059 3.941 8 H 0.027 0.973 9 C -0.179 4.179 10 C -0.557 4.557 11 H 0.065 0.935 12 C -0.183 4.183 13 N -0.556 5.556 14 Si 0.777 3.223 15 H -0.203 1.203 16 H -0.206 1.206 17 H -0.195 1.195 18 C -0.086 4.086 19 C -0.146 4.146 20 C -0.099 4.099 21 C -0.145 4.145 22 C -0.118 4.118 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.141 0.859 26 H 0.166 0.834 27 H 0.134 0.866 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.574 -14.440 -1.979 15.275 hybrid contribution -0.517 1.366 0.783 1.657 sum -5.091 -13.073 -1.196 14.080 Atomic orbital electron populations 1.23282 0.77081 1.05339 1.01807 1.85999 1.22912 1.26365 1.89242 1.18547 0.90841 0.84548 0.99523 1.21258 1.00543 0.91472 1.09301 1.20752 0.93944 0.97202 0.98862 1.20005 0.93902 0.95421 0.99125 1.17635 0.94087 0.88362 0.94026 0.97275 1.21631 0.98988 1.01373 0.95891 1.21393 1.27267 1.00456 1.06624 0.93501 1.25680 0.95080 0.98410 0.99149 1.70008 1.32438 1.16436 1.36693 0.85663 0.78747 0.77867 0.80043 1.20285 1.20628 1.19506 1.20643 0.96790 0.91950 0.99257 1.20140 0.91270 0.96681 1.06491 1.20874 0.91544 0.95174 1.02289 1.22305 0.97572 0.92668 1.01947 1.21106 0.90499 0.98487 1.01736 0.92474 0.92209 0.85916 0.83410 0.86552 0.95153 0.92183 0.96057 0.92936 0.89996 0.90069 0.88317 0.90335 0.90876 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.33 -9.60 10.44 -92.41 -0.97 -10.56 16 3 C 0.11 3.79 6.69 22.54 0.15 3.94 16 4 C -0.21 -7.21 9.03 22.34 0.20 -7.01 16 5 C -0.09 -3.73 8.68 22.23 0.19 -3.53 16 6 C -0.08 -3.85 4.75 -19.82 -0.09 -3.94 16 7 C 0.08 4.04 2.47 -12.29 -0.03 4.00 16 8 H 0.01 0.51 6.88 -2.39 -0.02 0.50 16 9 C -0.12 -6.10 8.78 71.98 0.63 -5.47 16 10 C -0.52 -29.23 8.24 25.60 0.21 -29.02 16 11 H 0.05 2.65 7.60 -2.91 -0.02 2.63 16 12 C 0.02 0.86 5.30 84.65 0.45 1.31 16 13 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 14 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 C -0.09 -3.50 6.02 -19.51 -0.12 -3.62 16 19 C -0.15 -5.18 6.11 -19.50 -0.12 -5.30 16 20 C -0.06 -1.71 6.71 30.51 0.20 -1.50 16 21 C -0.11 -2.76 7.07 31.51 0.22 -2.53 16 22 C -0.08 -2.83 5.97 30.62 0.18 -2.64 16 23 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 24 H 0.06 1.07 7.65 -2.39 -0.02 1.05 16 25 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.15 4.11 6.29 -2.91 -0.02 4.09 16 27 H 0.12 4.91 7.56 -2.91 -0.02 4.89 16 28 H 0.03 1.44 7.37 -2.39 -0.02 1.43 16 29 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 30 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.06 2.36 7.77 -2.38 -0.02 2.34 16 Total: -1.00 -64.32 298.39 5.55 -58.77 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.05 Total: 12.36 kcal Atomic # 6 Polarization: -57.03 SS G_CDS: 3.20 Total: -53.83 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.24 Total: -52.94 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.97 Total: -10.56 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.32 5.55 -58.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.342 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds