Wall clock time and date at job start Mon Mar 30 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34424 * 126.10304 * 2 1 4 4 C 1.30792 * 109.32373 * 180.27826 * 3 2 1 5 5 C 1.50693 * 125.72380 * 179.71933 * 4 3 2 6 6 C 1.53001 * 117.50235 * 8.70951 * 5 4 3 7 7 C 1.52998 * 117.50154 * 300.04777 * 5 4 3 8 8 N 1.34401 * 108.54930 * 359.68627 * 4 3 2 9 9 C 1.33866 * 126.10254 * 179.84391 * 2 1 3 10 10 C 1.50708 * 128.67754 * 0.06534 * 9 2 1 11 11 H 1.09001 * 109.74048 * 283.64217 * 10 9 2 12 12 C 1.50698 * 109.74535 * 44.31275 * 10 9 2 13 13 H 1.07994 * 120.00365 * 35.34681 * 12 10 9 14 14 C 1.37883 * 119.99950 * 215.34558 * 12 10 9 15 15 N 1.31520 * 119.99544 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00355 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46748 * 59.99733 * 16 14 12 18 18 H 1.48492 * 109.47313 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47132 * 300.00510 * 16 14 12 20 20 C 1.53495 * 108.05675 * 163.95589 * 10 9 2 21 21 C 1.53113 * 109.30870 * 48.70518 * 20 10 9 22 22 C 1.46476 * 128.44350 * 180.19008 * 8 4 3 23 23 H 1.09003 * 109.46948 * 267.47146 * 1 2 3 24 24 H 1.08998 * 109.46977 * 27.46748 * 1 2 3 25 25 H 1.09000 * 109.47185 * 147.47443 * 1 2 3 26 26 H 1.09005 * 115.55022 * 154.37754 * 5 4 3 27 27 H 1.09001 * 117.49481 * 359.97438 * 6 5 4 28 28 H 1.08995 * 117.50436 * 145.02100 * 6 5 4 29 29 H 1.09007 * 117.49995 * 214.98027 * 7 5 4 30 30 H 1.09005 * 117.49891 * 359.97342 * 7 5 4 31 31 H 0.97003 * 119.99429 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.49571 * 168.66045 * 20 10 9 33 33 H 1.09003 * 109.49798 * 288.75222 * 20 10 9 34 34 H 1.08999 * 109.43116 * 50.16786 * 21 20 10 35 35 H 1.09006 * 109.42701 * 170.01924 * 21 20 10 36 36 H 1.09002 * 109.60202 * 42.87884 * 22 8 4 37 37 H 1.08996 * 109.59974 * 282.39575 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2991 1.0861 0.0000 4 6 3.5513 0.7085 -0.0060 5 6 4.7468 1.6258 -0.0141 6 6 4.4919 3.1206 0.1901 7 6 4.8874 2.5929 -1.1913 8 7 3.5928 -0.6348 -0.0030 9 6 2.2958 -1.0816 0.0029 10 6 1.9001 -2.5358 0.0056 11 1 1.5691 -2.8255 1.0029 12 6 0.7881 -2.7627 -0.9858 13 1 0.7653 -2.2031 -1.9092 14 6 -0.2005 -3.6847 -0.7140 15 7 -0.1725 -4.3664 0.4104 16 14 -1.5793 -3.9654 -1.9424 17 1 -1.0062 -4.4240 -3.2335 18 1 -2.5066 -4.9998 -1.4179 19 1 -2.3207 -2.6961 -2.1531 20 6 3.1289 -3.3639 -0.3949 21 6 4.3350 -2.9136 0.4339 22 6 4.7676 -1.5097 -0.0036 23 1 -0.3633 -0.0453 1.0267 24 1 -0.3633 0.9118 -0.4740 25 1 -0.3633 -0.8665 -0.5525 26 1 5.6619 1.2093 0.4071 27 1 3.4593 3.4405 0.3298 28 1 5.2393 3.6875 0.7451 29 1 5.8950 2.8128 -1.5444 30 1 4.1153 2.5653 -1.9603 31 1 -0.8677 -5.0154 0.6015 32 1 2.9327 -4.4197 -0.2081 33 1 3.3390 -3.2144 -1.4540 34 1 4.0637 -2.8970 1.4895 35 1 5.1593 -3.6106 0.2829 36 1 5.5119 -1.1229 0.6926 37 1 5.1903 -1.5535 -1.0073 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261083248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:48 Heat of formation + Delta-G solvation = 66.089846 kcal Electronic energy + Delta-G solvation = -18262.595452 eV Core-core repulsion = 15619.781454 eV Total energy + Delta-G solvation = -2642.813998 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54285 -36.94463 -35.74935 -33.77613 -31.54306 -29.62031 -28.90405 -26.12009 -24.79985 -22.80357 -22.22905 -22.17272 -20.30137 -18.92485 -18.09605 -16.56318 -16.15035 -15.09307 -14.86431 -14.42929 -14.17688 -13.47964 -13.24051 -12.86222 -12.66316 -12.18638 -11.89150 -11.63998 -11.48925 -11.32167 -11.24382 -11.08821 -10.78236 -10.61718 -10.38315 -10.34546 -10.24264 -10.10103 -9.46033 -9.26495 -8.96002 -8.59872 -8.45541 -7.00193 -6.09877 -4.12763 2.86012 3.28775 3.34122 3.37160 3.49616 3.82745 4.27613 4.38653 4.75946 5.01356 5.07783 5.11838 5.14634 5.21316 5.34238 5.48163 5.74758 5.81137 5.89367 6.01060 6.10725 6.19662 6.24833 6.37380 6.41373 6.46782 6.75017 6.76905 6.82000 6.97123 7.16572 7.32946 7.51242 7.64585 7.82906 7.86427 8.11185 8.30626 8.92385 9.02509 9.48444 10.97296 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.007440 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.146596 B = 3762.454809 C = 4374.350063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.010 4.010 3 N -0.493 5.493 4 C 0.197 3.803 5 C -0.071 4.071 6 C -0.154 4.154 7 C -0.166 4.166 8 N -0.458 5.458 9 C 0.032 3.968 10 C 0.105 3.895 11 H 0.076 0.924 12 C -0.498 4.498 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.890 5.890 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.111 4.111 21 C -0.136 4.136 22 C 0.113 3.887 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.264 0.736 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 6.473 -0.235 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 N -0.214 5.214 4 C -0.063 4.063 5 C -0.091 4.091 6 C -0.192 4.192 7 C -0.205 4.205 8 N -0.143 5.143 9 C -0.082 4.082 10 C 0.085 3.915 11 H 0.094 0.906 12 C -0.536 4.536 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.149 4.149 21 C -0.174 4.174 22 C -0.010 4.010 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.573 7.050 -0.116 11.889 hybrid contribution -0.249 -1.079 -0.599 1.259 sum 9.323 5.972 -0.716 11.095 Atomic orbital electron populations 1.20138 0.88018 1.02577 1.01341 1.20057 0.96135 0.87487 1.09909 1.70080 0.99242 1.31164 1.20932 1.21559 0.93596 0.81142 1.10010 1.19904 0.94227 0.90042 1.04966 1.22916 1.03514 0.93922 0.98852 1.23003 1.02404 1.02942 0.92120 1.45131 1.07288 1.05919 1.55953 1.22215 0.81207 0.99551 1.05230 1.17703 0.92274 0.81597 0.99927 0.90630 1.20787 1.07714 1.21520 1.03622 0.92421 1.24962 0.97651 0.95645 0.95223 1.69894 1.34465 1.25023 1.23358 0.86661 0.81885 0.78207 0.81416 1.20207 1.21222 1.19800 1.21870 0.93925 1.01295 0.97848 1.21976 1.00212 0.93615 1.01562 1.21782 0.86506 0.91137 1.01604 0.93218 0.93713 0.88387 0.87263 0.87429 0.88837 0.88789 0.88478 0.92612 0.91570 0.93312 0.91578 0.91258 0.90779 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.40 10.16 36.00 0.37 -1.04 16 2 C -0.01 -0.23 6.99 -82.99 -0.58 -0.81 16 3 N -0.49 -11.00 10.83 -7.27 -0.08 -11.08 16 4 C 0.20 3.88 7.48 -155.76 -1.16 2.71 16 5 C -0.07 -1.06 6.01 -91.78 -0.55 -1.61 16 6 C -0.15 -2.01 10.14 -26.69 -0.27 -2.28 16 7 C -0.17 -2.14 10.24 -26.69 -0.27 -2.41 16 8 N -0.46 -9.20 3.13 -109.43 -0.34 -9.54 16 9 C 0.03 0.73 6.08 -81.73 -0.50 0.24 16 10 C 0.10 2.54 2.55 -92.66 -0.24 2.31 16 11 H 0.08 2.05 7.29 -51.93 -0.38 1.67 16 12 C -0.50 -13.01 5.62 -34.44 -0.19 -13.20 16 13 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 14 C 0.07 1.79 5.46 -17.81 -0.10 1.69 16 15 N -0.89 -24.44 12.79 55.43 0.71 -23.73 16 16 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.11 -2.33 5.27 -26.42 -0.14 -2.47 16 21 C -0.14 -2.27 5.92 -26.53 -0.16 -2.42 16 22 C 0.11 1.79 6.75 -3.91 -0.03 1.76 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.10 2.33 5.57 -51.93 -0.29 2.04 16 26 H 0.11 1.36 7.97 -51.93 -0.41 0.95 16 27 H 0.11 1.61 7.89 -51.93 -0.41 1.20 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.97 7.97 -51.93 -0.41 0.56 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -29.20 300.36 -9.70 -38.90 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.67 Total: 2.91 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.82 Total: -17.53 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.29 Total: -44.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.20 -9.70 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.987 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds