Wall clock time and date at job start Mon Mar 30 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34424 * 126.10304 * 2 1 4 4 C 1.30792 * 109.32373 * 180.27826 * 3 2 1 5 5 C 1.50693 * 125.72380 * 179.71933 * 4 3 2 6 6 C 1.53001 * 117.50235 * 8.70951 * 5 4 3 7 7 C 1.52998 * 117.50154 * 300.04777 * 5 4 3 8 8 N 1.34401 * 108.54930 * 359.68627 * 4 3 2 9 9 C 1.33866 * 126.10254 * 179.84391 * 2 1 3 10 10 C 1.50708 * 128.67754 * 0.06534 * 9 2 1 11 11 H 1.09001 * 109.74048 * 283.64217 * 10 9 2 12 12 C 1.50698 * 109.74535 * 44.31275 * 10 9 2 13 13 H 1.07994 * 120.00365 * 35.34681 * 12 10 9 14 14 C 1.37883 * 119.99950 * 215.34558 * 12 10 9 15 15 N 1.31520 * 119.99544 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00355 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46748 * 59.99733 * 16 14 12 18 18 H 1.48492 * 109.47313 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47132 * 300.00510 * 16 14 12 20 20 C 1.53495 * 108.05675 * 163.95589 * 10 9 2 21 21 C 1.53113 * 109.30870 * 48.70518 * 20 10 9 22 22 C 1.46476 * 128.44350 * 180.19008 * 8 4 3 23 23 H 1.09003 * 109.46948 * 267.47146 * 1 2 3 24 24 H 1.08998 * 109.46977 * 27.46748 * 1 2 3 25 25 H 1.09000 * 109.47185 * 147.47443 * 1 2 3 26 26 H 1.09005 * 115.55022 * 154.37754 * 5 4 3 27 27 H 1.09001 * 117.49481 * 359.97438 * 6 5 4 28 28 H 1.08995 * 117.50436 * 145.02100 * 6 5 4 29 29 H 1.09007 * 117.49995 * 214.98027 * 7 5 4 30 30 H 1.09005 * 117.49891 * 359.97342 * 7 5 4 31 31 H 0.97003 * 119.99429 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.49571 * 168.66045 * 20 10 9 33 33 H 1.09003 * 109.49798 * 288.75222 * 20 10 9 34 34 H 1.08999 * 109.43116 * 50.16786 * 21 20 10 35 35 H 1.09006 * 109.42701 * 170.01924 * 21 20 10 36 36 H 1.09002 * 109.60202 * 42.87884 * 22 8 4 37 37 H 1.08996 * 109.59974 * 282.39575 * 22 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2991 1.0861 0.0000 4 6 3.5513 0.7085 -0.0060 5 6 4.7468 1.6258 -0.0141 6 6 4.4919 3.1206 0.1901 7 6 4.8874 2.5929 -1.1913 8 7 3.5928 -0.6348 -0.0030 9 6 2.2958 -1.0816 0.0029 10 6 1.9001 -2.5358 0.0056 11 1 1.5691 -2.8255 1.0029 12 6 0.7881 -2.7627 -0.9858 13 1 0.7653 -2.2031 -1.9092 14 6 -0.2005 -3.6847 -0.7140 15 7 -0.1725 -4.3664 0.4104 16 14 -1.5793 -3.9654 -1.9424 17 1 -1.0062 -4.4240 -3.2335 18 1 -2.5066 -4.9998 -1.4179 19 1 -2.3207 -2.6961 -2.1531 20 6 3.1289 -3.3639 -0.3949 21 6 4.3350 -2.9136 0.4339 22 6 4.7676 -1.5097 -0.0036 23 1 -0.3633 -0.0453 1.0267 24 1 -0.3633 0.9118 -0.4740 25 1 -0.3633 -0.8665 -0.5525 26 1 5.6619 1.2093 0.4071 27 1 3.4593 3.4405 0.3298 28 1 5.2393 3.6875 0.7451 29 1 5.8950 2.8128 -1.5444 30 1 4.1153 2.5653 -1.9603 31 1 -0.8677 -5.0154 0.6015 32 1 2.9327 -4.4197 -0.2081 33 1 3.3390 -3.2144 -1.4540 34 1 4.0637 -2.8970 1.4895 35 1 5.1593 -3.6106 0.2829 36 1 5.5119 -1.1229 0.6926 37 1 5.1903 -1.5535 -1.0073 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261083248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:48 Heat of formation + Delta-G solvation = 50.926538 kcal Electronic energy + Delta-G solvation = -18263.252982 eV Core-core repulsion = 15619.781454 eV Total energy + Delta-G solvation = -2643.471528 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.13742 -38.17042 -37.22137 -35.57072 -33.39177 -31.22687 -30.61028 -27.84647 -26.48403 -24.36382 -23.74147 -23.19909 -21.86750 -20.44169 -19.67094 -18.52090 -17.53289 -16.68345 -16.52155 -15.87256 -15.52201 -14.95968 -14.79004 -14.60255 -14.28511 -13.76698 -13.65929 -13.17406 -13.06266 -12.95844 -12.80065 -12.56810 -12.35238 -12.31721 -12.04139 -11.77471 -11.50991 -11.39903 -11.22845 -11.11088 -10.71789 -10.48890 -10.11190 -8.72821 -8.11871 -6.21093 1.29837 1.42540 1.43808 1.51232 2.03976 2.20398 2.44281 3.10080 3.15557 3.49171 3.72234 3.91170 3.94456 4.02170 4.19125 4.24273 4.38232 4.53367 4.64094 4.68098 4.72498 4.81990 4.82917 4.94292 4.98091 5.09325 5.12100 5.18383 5.27301 5.37109 5.40530 5.54881 5.60657 5.79547 5.83799 6.09741 6.31597 6.62121 6.86680 7.36439 7.42227 8.93736 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028825 B = 0.007440 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.146596 B = 3762.454809 C = 4374.350063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.036 4.036 3 N -0.524 5.524 4 C 0.212 3.788 5 C -0.091 4.091 6 C -0.147 4.147 7 C -0.151 4.151 8 N -0.460 5.460 9 C 0.003 3.997 10 C 0.106 3.894 11 H 0.037 0.963 12 C -0.502 4.502 13 H 0.043 0.957 14 C 0.025 3.975 15 N -0.921 5.921 16 Si 0.945 3.055 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.270 1.270 20 C -0.105 4.105 21 C -0.127 4.127 22 C 0.106 3.894 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.264 0.736 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.694 7.614 -0.714 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.162 4.162 3 N -0.246 5.246 4 C -0.050 4.050 5 C -0.111 4.111 6 C -0.184 4.184 7 C -0.189 4.189 8 N -0.144 5.144 9 C -0.112 4.112 10 C 0.086 3.914 11 H 0.055 0.945 12 C -0.540 4.540 13 H 0.061 0.939 14 C -0.174 4.174 15 N -0.560 5.560 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.195 1.195 20 C -0.144 4.144 21 C -0.164 4.164 22 C -0.014 4.014 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.099 0.901 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.445 8.179 -0.603 14.904 hybrid contribution -1.079 -1.340 -0.447 1.778 sum 11.366 6.839 -1.050 13.306 Atomic orbital electron populations 1.20010 0.88246 1.02141 1.01032 1.20318 0.96711 0.88502 1.10653 1.70077 1.00547 1.30930 1.23003 1.22592 0.94384 0.81683 1.06342 1.20275 0.93315 0.90100 1.07410 1.22986 1.03208 0.92754 0.99496 1.23057 1.03704 1.01008 0.91146 1.45347 1.07222 1.06583 1.55224 1.21937 0.83133 0.98725 1.07375 1.17489 0.93321 0.83266 0.97302 0.94544 1.20909 1.08701 1.21007 1.03379 0.93855 1.25581 0.99612 0.95546 0.96681 1.70003 1.35287 1.25807 1.24860 0.85801 0.79468 0.78116 0.79555 1.19686 1.20736 1.19538 1.21666 0.94736 0.99622 0.98348 1.21893 0.99338 0.95345 0.99849 1.22162 0.85623 0.89732 1.03929 0.93287 0.92446 0.90467 0.83864 0.90061 0.85244 0.84988 0.90877 0.92676 0.93376 0.93718 0.92612 0.87233 0.86744 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.63 10.16 71.24 0.72 -1.90 16 2 C -0.04 -1.75 6.99 41.17 0.29 -1.46 16 3 N -0.52 -23.45 10.83 -176.92 -1.92 -25.37 16 4 C 0.21 7.99 7.48 138.24 1.03 9.02 16 5 C -0.09 -2.35 6.01 -11.54 -0.07 -2.42 16 6 C -0.15 -3.31 10.14 30.62 0.31 -3.00 16 7 C -0.15 -3.30 10.24 30.62 0.31 -2.99 16 8 N -0.46 -17.81 3.13 -500.12 -1.57 -19.38 16 9 C 0.00 0.13 6.08 40.73 0.25 0.38 16 10 C 0.11 5.35 2.55 -12.12 -0.03 5.32 16 11 H 0.04 2.10 7.29 -2.39 -0.02 2.08 16 12 C -0.50 -27.27 5.62 25.60 0.14 -27.12 16 13 H 0.04 2.43 7.77 -2.91 -0.02 2.40 16 14 C 0.03 1.37 5.46 84.66 0.46 1.83 16 15 N -0.92 -52.51 12.79 21.45 0.27 -52.23 16 16 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 C -0.11 -4.45 5.27 30.80 0.16 -4.29 16 21 C -0.13 -3.96 5.92 30.73 0.18 -3.78 16 22 C 0.11 3.01 6.75 86.48 0.58 3.59 16 23 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.08 3.87 5.57 -2.39 -0.01 3.86 16 26 H 0.14 2.74 7.97 -2.38 -0.02 2.72 16 27 H 0.08 2.30 7.89 -2.39 -0.02 2.28 16 28 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 34 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 35 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.11 2.38 7.97 -2.39 -0.02 2.36 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -67.09 300.36 4.21 -62.88 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.05 Total: 15.68 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 4.35 Total: -26.83 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -3.21 Total: -96.98 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -67.09 4.21 -62.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261083248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.805 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds