Wall clock time and date at job start Mon Mar 30 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 C 1.50695 * 109.47196 * 64.99596 * 3 2 1 14 14 C 1.38268 * 120.06525 * 60.00342 * 13 3 2 15 15 C 1.38051 * 119.89204 * 180.02562 * 14 13 3 16 16 C 1.38647 * 120.30349 * 359.93354 * 15 14 13 17 17 C 1.37911 * 119.78039 * 359.95331 * 16 15 14 18 18 C 1.38070 * 120.06800 * 239.72067 * 13 3 2 19 19 C 1.50742 * 121.34838 * 180.30751 * 17 16 15 20 20 C 1.52971 * 109.76964 * 343.02667 * 19 17 16 21 21 O 1.43223 * 108.47610 * 49.18906 * 20 19 17 22 22 C 1.42723 * 113.12371 * 289.30932 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.07989 * 120.05147 * 0.06578 * 14 13 3 30 30 H 1.07993 * 119.85045 * 179.90206 * 15 14 13 31 31 H 1.07998 * 119.86320 * 0.08316 * 18 13 3 32 32 H 1.09002 * 109.42125 * 222.93781 * 19 17 16 33 33 H 1.09002 * 109.37375 * 103.08748 * 19 17 16 34 34 H 1.09003 * 109.63609 * 289.49307 * 20 19 17 35 35 H 1.08997 * 109.80642 * 168.98114 * 20 19 17 36 36 H 1.09002 * 109.33965 * 291.54667 * 22 21 20 37 37 H 1.09000 * 109.20878 * 171.94743 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 6 1.6413 2.1163 1.2876 14 6 2.0760 1.6093 2.4983 15 6 1.7081 2.2291 3.6757 16 6 0.9054 3.3592 3.6502 17 6 0.4739 3.8659 2.4423 18 6 0.8459 3.2446 1.2605 19 6 -0.3941 5.0964 2.3731 20 6 -1.0142 5.3699 3.7445 21 8 0.0242 5.3224 4.7298 22 6 0.5216 4.0040 4.9567 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 2.7028 0.7303 2.5227 30 1 2.0468 1.8316 4.6210 31 1 0.5090 3.6425 0.3147 32 1 -1.1869 4.9400 1.6416 33 1 0.2128 5.9506 2.0729 34 1 -1.7640 4.6102 3.9656 35 1 -1.4791 6.3557 3.7496 36 1 -0.2496 3.4057 5.4417 37 1 1.3972 4.0575 5.6037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261085024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:02 Heat of formation + Delta-G solvation = -59.513975 kcal Electronic energy + Delta-G solvation = -17835.953863 eV Core-core repulsion = 15155.400523 eV Total energy + Delta-G solvation = -2680.553339 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.15166 -38.92762 -36.52524 -33.92108 -33.75203 -31.98419 -30.27496 -29.19117 -26.29796 -24.89066 -24.52053 -22.98226 -22.09189 -20.04909 -18.36996 -17.78261 -17.07536 -16.86136 -16.45548 -16.00238 -15.46284 -15.02111 -14.82139 -14.72141 -14.37486 -14.03162 -13.63365 -13.44709 -13.13390 -13.12431 -12.98002 -12.70401 -12.46345 -12.26373 -12.01559 -11.77337 -11.71021 -11.47831 -11.18825 -10.94973 -10.53071 -10.43373 -9.52480 -9.14219 -8.10260 -6.24664 0.56894 0.58654 1.40104 1.40562 1.48622 2.41075 2.91341 3.02205 3.16272 3.80636 3.86788 4.00289 4.16545 4.34172 4.38666 4.47536 4.51534 4.57259 4.61440 4.67195 4.73981 4.79346 4.88579 4.96208 5.02341 5.11242 5.19931 5.28106 5.36575 5.48451 5.60539 5.61717 5.71831 5.74568 6.06765 6.13292 6.19372 6.27874 6.39645 6.83793 7.42588 8.92850 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029968 B = 0.006057 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.099093 B = 4621.766044 C = 4915.993951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.080 3.920 4 H 0.000 1.000 5 C -0.525 4.525 6 H 0.047 0.953 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.276 1.276 13 C -0.045 4.045 14 C -0.130 4.130 15 C -0.110 4.110 16 C -0.152 4.152 17 C -0.082 4.082 18 C -0.145 4.145 19 C -0.113 4.113 20 C 0.061 3.939 21 O -0.394 6.394 22 C 0.110 3.890 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.262 0.738 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 5.925 11.759 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.062 3.938 4 H 0.018 0.982 5 C -0.563 4.563 6 H 0.065 0.935 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.201 1.201 13 C -0.045 4.045 14 C -0.148 4.148 15 C -0.128 4.128 16 C -0.153 4.153 17 C -0.083 4.083 18 C -0.163 4.163 19 C -0.150 4.150 20 C -0.016 4.016 21 O -0.313 6.313 22 C 0.034 3.966 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.264 6.001 11.682 15.517 hybrid contribution 1.195 -0.563 -1.030 1.675 sum -7.070 5.438 10.652 13.893 Atomic orbital electron populations 1.21689 0.96677 1.00544 1.00203 1.21436 0.93947 0.98348 1.00763 1.17749 0.94391 0.92540 0.89132 0.98205 1.21380 0.92160 1.37468 1.05289 0.93474 1.25679 1.02220 0.94934 0.95402 1.69995 1.36440 1.39067 1.09791 0.85716 0.80805 0.78263 0.77526 1.19559 1.20656 1.20103 1.20361 0.93473 0.94399 0.96298 1.20992 1.00697 1.00791 0.92332 1.21159 0.97891 0.95463 0.98321 1.20374 1.00970 0.97839 0.96087 1.19704 0.99000 0.97343 0.92206 1.21070 1.00688 0.96804 0.97776 1.21155 0.98954 0.94760 1.00089 1.22770 0.89052 1.03952 0.85778 1.88010 1.55186 1.28237 1.59864 1.21463 1.00033 0.82983 0.92169 0.92746 0.94255 0.93648 0.94872 0.91641 0.92884 0.87145 0.83746 0.87229 0.88687 0.90176 0.91782 0.86059 0.90278 0.86806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 9.73 71.98 0.70 -4.66 16 2 C -0.11 -5.15 5.14 30.60 0.16 -4.99 16 3 C 0.08 4.11 1.96 -12.28 -0.02 4.08 16 4 H 0.00 -0.01 7.87 -2.39 -0.02 -0.03 16 5 C -0.52 -29.33 8.25 25.60 0.21 -29.12 16 6 H 0.05 2.65 7.60 -2.91 -0.02 2.62 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -52.69 11.29 21.45 0.24 -52.45 16 9 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C -0.05 -1.99 3.71 -19.90 -0.07 -2.06 16 14 C -0.13 -5.18 8.66 22.23 0.19 -4.99 16 15 C -0.11 -3.55 9.67 22.32 0.22 -3.34 16 16 C -0.15 -4.65 5.80 -19.86 -0.12 -4.76 16 17 C -0.08 -2.71 5.78 -19.84 -0.11 -2.82 16 18 C -0.15 -5.72 9.30 22.32 0.21 -5.51 16 19 C -0.11 -2.79 6.00 29.85 0.18 -2.61 16 20 C 0.06 1.23 6.85 71.97 0.49 1.72 16 21 O -0.39 -9.79 10.80 -148.98 -1.61 -11.40 16 22 C 0.11 2.55 6.66 71.22 0.47 3.03 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.72 7.38 -2.38 -0.02 1.70 16 26 H 0.03 1.55 7.23 -2.39 -0.02 1.53 16 27 H 0.07 3.55 5.95 -2.39 -0.01 3.53 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.11 4.54 7.56 -2.92 -0.02 4.52 16 30 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.11 4.26 7.94 -2.91 -0.02 4.23 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.17 8.07 -2.39 -0.02 1.15 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -62.93 298.72 4.65 -58.28 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.04 Total: 14.20 kcal Atomic # 6 Polarization: -57.63 SS G_CDS: 2.95 Total: -54.68 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.24 Total: -52.45 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.61 Total: -11.40 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.93 4.65 -58.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.230 kcal (2) G-P(sol) polarization free energy of solvation -62.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds