Wall clock time and date at job start Mon Mar 30 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47607 * 2 1 4 4 C 1.50705 * 109.46781 * 119.99815 * 2 1 3 5 5 H 1.08000 * 120.00339 * 119.99900 * 4 2 1 6 6 C 1.37876 * 119.99796 * 299.99411 * 4 2 1 7 7 N 1.31516 * 120.00209 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99871 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46719 * 120.00240 * 8 6 4 11 11 H 1.48498 * 109.47044 * 240.00186 * 8 6 4 12 12 C 1.50705 * 109.47046 * 239.99084 * 2 1 3 13 13 C 1.38145 * 119.84323 * 300.00239 * 12 2 1 14 14 C 1.38244 * 119.98226 * 179.75155 * 13 12 2 15 15 C 1.38017 * 119.95791 * 0.33005 * 14 13 12 16 16 C 1.39095 * 120.21475 * 359.95683 * 15 14 13 17 17 C 1.38419 * 119.69615 * 359.92497 * 16 15 14 18 18 C 1.50770 * 121.40130 * 180.26235 * 17 16 15 19 19 C 1.53074 * 109.67906 * 342.19068 * 18 17 16 20 20 C 1.53411 * 108.29951 * 48.20757 * 19 18 17 21 21 H 1.09002 * 109.70858 * 55.01381 * 20 19 18 22 22 C 1.52999 * 109.68384 * 175.54643 * 20 19 18 23 23 O 1.35843 * 118.50462 * 179.74025 * 16 15 14 24 24 H 1.09000 * 109.46901 * 60.00155 * 1 2 3 25 25 H 1.08999 * 109.47352 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47076 * 300.00640 * 1 2 3 27 27 H 0.96995 * 119.99868 * 179.97438 * 7 6 4 28 28 H 1.08002 * 120.01255 * 0.03746 * 13 12 2 29 29 H 1.08002 * 120.02387 * 180.34481 * 14 13 12 30 30 H 1.08005 * 119.88910 * 179.97438 * 15 14 13 31 31 H 1.08999 * 109.43528 * 222.12519 * 18 17 16 32 32 H 1.09001 * 109.43337 * 102.25392 * 18 17 16 33 33 H 1.09008 * 109.69610 * 288.51234 * 19 18 17 34 34 H 1.08993 * 109.73591 * 167.93530 * 19 18 17 35 35 H 1.08999 * 109.47151 * 178.92872 * 22 20 19 36 36 H 1.08993 * 109.47110 * 298.93324 * 22 20 19 37 37 H 1.09004 * 109.46510 * 58.93023 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.1481 -2.2855 3.6041 10 1 3.1472 -0.1855 4.8161 11 1 1.1676 -1.5862 4.8166 12 6 2.0323 -0.7106 -1.2304 13 6 1.6966 -2.0333 -1.4456 14 6 2.1515 -2.6864 -2.5759 15 6 2.9466 -2.0183 -3.4849 16 6 3.2916 -0.6883 -3.2684 17 6 2.8325 -0.0362 -2.1371 18 6 3.1780 1.4064 -1.8672 19 6 4.3816 1.8163 -2.7195 20 6 4.1274 1.3613 -4.1624 21 1 3.1778 1.7652 -4.5133 22 6 5.2611 1.8524 -5.0649 23 8 4.0801 -0.0660 -4.1829 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7082 1.1611 3.4843 28 1 1.0750 -2.5556 -0.7334 29 1 1.8849 -3.7188 -2.7476 30 1 3.3018 -2.5298 -4.3674 31 1 3.4218 1.5296 -0.8120 32 1 2.3246 2.0366 -2.1177 33 1 5.2830 1.3374 -2.3367 34 1 4.5008 2.8993 -2.6913 35 1 5.0869 1.5112 -6.0853 36 1 5.2941 2.9417 -5.0466 37 1 6.2100 1.4541 -4.7055 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087692.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:31 Heat of formation + Delta-G solvation = -36.428563 kcal Electronic energy + Delta-G solvation = -18075.994219 eV Core-core repulsion = 15396.441939 eV Total energy + Delta-G solvation = -2679.552281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26534 -37.49149 -34.68758 -33.48905 -31.72302 -31.05096 -27.91942 -27.77297 -25.13318 -23.78228 -22.58102 -22.46802 -19.53613 -19.41442 -17.18890 -16.18142 -15.88379 -15.26016 -14.64284 -14.54920 -13.83216 -13.60753 -13.35585 -12.87861 -12.76330 -12.62537 -12.45224 -11.92203 -11.88382 -11.47804 -11.20162 -11.00421 -10.93293 -10.75215 -10.57364 -10.34626 -10.22176 -10.12728 -9.94499 -9.25827 -8.96323 -8.36125 -7.78408 -7.44500 -6.02489 -4.08540 2.03879 2.18679 3.27934 3.36315 3.41381 3.59149 4.37297 4.50953 4.84755 4.96407 5.12601 5.28537 5.34867 5.42603 5.53272 5.60646 5.66767 5.74114 5.94881 6.00511 6.05884 6.12493 6.21049 6.34335 6.43498 6.63723 6.74209 6.82856 6.90843 7.07248 7.21935 7.24236 7.37300 7.51282 7.72052 7.97611 8.01054 8.09609 8.39460 8.94459 9.55951 11.03173 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026847 B = 0.006844 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.685793 B = 4090.222792 C = 4524.168440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.065 3.935 3 H 0.042 0.958 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.891 3.109 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.002 3.998 13 C -0.143 4.143 14 C -0.096 4.096 15 C -0.178 4.178 16 C 0.122 3.878 17 C -0.168 4.168 18 C -0.075 4.075 19 C -0.152 4.152 20 C 0.087 3.913 21 H 0.066 0.934 22 C -0.143 4.143 23 O -0.322 6.322 24 H 0.007 0.993 25 H 0.029 0.971 26 H 0.085 0.915 27 H 0.260 0.740 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 1.026 -11.498 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.047 3.953 3 H 0.060 0.940 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.719 3.281 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.002 3.998 13 C -0.162 4.162 14 C -0.114 4.114 15 C -0.196 4.196 16 C 0.078 3.922 17 C -0.169 4.169 18 C -0.112 4.112 19 C -0.190 4.190 20 C 0.031 3.969 21 H 0.084 0.916 22 C -0.201 4.201 23 O -0.237 6.237 24 H 0.026 0.974 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.459 1.065 -11.506 12.386 hybrid contribution 0.213 -0.372 1.062 1.146 sum 4.672 0.692 -10.444 11.462 Atomic orbital electron populations 1.21773 0.97579 0.99358 1.00169 1.18022 0.92873 0.95961 0.88494 0.93966 1.21154 1.30973 1.12326 0.89769 0.92404 1.24949 0.95074 0.95016 0.98902 1.69892 1.36803 1.22971 1.23290 0.86541 0.78679 0.79792 0.83083 1.19736 1.21048 1.20997 1.20434 0.91293 0.93512 0.94596 1.20958 1.02653 0.94987 0.97560 1.20831 0.97290 0.98973 0.94348 1.20273 1.04431 0.93047 1.01895 1.18607 0.92775 0.92269 0.88522 1.19705 1.04295 0.97234 0.95636 1.20477 0.96857 0.92400 1.01490 1.22292 0.99880 1.01728 0.95066 1.22387 0.99208 0.79344 0.96009 0.91563 1.21781 0.97927 1.00909 0.99437 1.85894 1.63659 1.20649 1.53499 0.97374 0.95226 0.89611 0.93026 0.85946 0.86549 0.86614 0.88804 0.91192 0.90793 0.90421 0.91847 0.90711 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.78 37.16 0.33 -2.82 16 2 C 0.06 1.60 2.24 -92.92 -0.21 1.39 16 3 H 0.04 1.09 5.62 -51.93 -0.29 0.80 16 4 C -0.50 -13.62 8.23 -34.44 -0.28 -13.90 16 5 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 8 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.00 0.04 4.74 -104.57 -0.50 -0.46 16 13 C -0.14 -2.95 8.69 -39.61 -0.34 -3.29 16 14 C -0.10 -1.71 10.04 -39.66 -0.40 -2.11 16 15 C -0.18 -3.17 9.94 -39.34 -0.39 -3.56 16 16 C 0.12 2.32 6.47 -39.20 -0.25 2.07 16 17 C -0.17 -3.39 5.75 -104.44 -0.60 -4.00 16 18 C -0.08 -1.35 4.80 -27.81 -0.13 -1.49 16 19 C -0.15 -2.19 5.49 -26.48 -0.15 -2.34 16 20 C 0.09 1.21 3.42 -26.52 -0.09 1.12 16 21 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 22 C -0.14 -1.50 9.59 37.16 0.36 -1.14 16 23 O -0.32 -5.52 9.92 -19.25 -0.19 -5.71 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.03 0.68 7.37 -51.93 -0.38 0.29 16 26 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.12 2.52 7.56 -52.49 -0.40 2.12 16 29 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.09 1.85 6.73 -51.93 -0.35 1.50 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 296.09 15.07 4.46 4.46 Total: -1.00 -28.71 296.09 -8.38 -37.08 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.50 Total: 1.28 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -2.76 Total: -28.96 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.63 Total: -24.27 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.19 Total: -5.71 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.71 -8.38 -37.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087692.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.655 kcal (2) G-P(sol) polarization free energy of solvation -28.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds