Wall clock time and date at job start Mon Mar 30 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99812 * 2 1 4 4 H 1.48503 * 109.46945 * 239.99806 * 3 2 1 5 5 H 1.48498 * 109.46937 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47185 * 119.99750 * 3 2 1 7 7 C 1.37880 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99991 * 185.14278 * 7 2 1 9 9 C 1.50697 * 119.99409 * 5.14504 * 7 2 1 10 10 H 1.08993 * 109.74767 * 25.54701 * 9 7 2 11 11 C 1.53500 * 109.74335 * 264.87100 * 9 7 2 12 12 C 1.53114 * 109.33664 * 191.59887 * 11 9 7 13 13 C 1.53348 * 109.67262 * 69.89161 * 12 11 9 14 14 N 1.46474 * 108.70622 * 309.24269 * 13 12 11 15 15 C 1.37185 * 124.32814 * 17.27459 * 14 13 12 16 16 C 1.33860 * 107.09743 * 180.17247 * 15 14 13 17 17 N 1.34419 * 107.79898 * 359.94391 * 16 15 14 18 18 C 1.30790 * 109.32178 * 0.02562 * 17 16 15 19 19 C 1.50707 * 125.72420 * 180.09410 * 18 17 16 20 20 C 1.53782 * 113.61370 * 37.45554 * 19 18 17 21 21 C 1.53780 * 87.07799 * 220.01758 * 20 19 18 22 22 C 1.53778 * 113.61030 * 299.95824 * 19 18 17 23 23 H 0.97002 * 119.99907 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.49802 * 311.57372 * 11 9 7 25 25 H 1.09004 * 109.49018 * 71.63455 * 11 9 7 26 26 H 1.09005 * 109.42653 * 189.99573 * 12 11 9 27 27 H 1.08994 * 109.43439 * 309.84813 * 12 11 9 28 28 H 1.08993 * 109.58941 * 189.47644 * 13 12 11 29 29 H 1.08999 * 109.59616 * 69.00929 * 13 12 11 30 30 H 1.07998 * 126.09762 * 179.90412 * 16 15 14 31 31 H 1.08995 * 112.84690 * 168.76347 * 19 18 17 32 32 H 1.09003 * 113.61369 * 334.56578 * 20 19 18 33 33 H 1.08999 * 113.61350 * 105.46855 * 20 19 18 34 34 H 1.08999 * 113.61875 * 270.87970 * 21 20 19 35 35 H 1.09011 * 113.61019 * 139.97997 * 21 20 19 36 36 H 1.09001 * 113.61396 * 254.52390 * 22 19 18 37 37 H 1.09001 * 113.62200 * 25.35059 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0844 9 6 1.2557 -2.4965 -0.1159 10 1 0.3071 -2.3315 -0.6267 11 6 0.9979 -3.0733 1.2830 12 6 0.5028 -4.5163 1.1531 13 6 1.6481 -5.4133 0.6680 14 7 2.2510 -4.8042 -0.5198 15 6 2.0824 -3.4932 -0.8871 16 6 2.7760 -3.3087 -2.0170 17 7 3.3585 -4.4771 -2.3370 18 6 3.0455 -5.3765 -1.4405 19 6 3.5010 -6.8131 -1.4390 20 6 4.9489 -7.0007 -1.9218 21 6 4.4562 -8.2554 -2.6620 22 6 3.0660 -7.5985 -2.6874 23 1 -0.4850 0.8401 -0.0004 24 1 1.9226 -3.0563 1.8596 25 1 0.2420 -2.4735 1.7900 26 1 0.1518 -4.8679 2.1234 27 1 -0.3169 -4.5553 0.4359 28 1 1.2581 -6.3993 0.4153 29 1 2.3987 -5.5046 1.4530 30 1 2.8533 -2.3858 -2.5727 31 1 3.2818 -7.3255 -0.5023 32 1 5.2936 -6.2087 -2.5867 33 1 5.6528 -7.2162 -1.1180 34 1 4.4995 -9.1629 -2.0599 35 1 4.8980 -8.3807 -3.6507 36 1 2.2498 -8.2967 -2.5016 37 1 2.8945 -6.9697 -3.5612 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261089589.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:55 Heat of formation + Delta-G solvation = 61.320455 kcal Electronic energy + Delta-G solvation = -18037.852623 eV Core-core repulsion = 15394.831809 eV Total energy + Delta-G solvation = -2643.020814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54658 -38.28639 -35.83968 -33.46687 -31.28961 -29.66891 -27.87706 -25.46511 -25.30994 -24.72007 -22.29573 -21.05823 -20.50974 -18.60723 -18.07045 -16.71963 -16.32575 -15.23224 -14.96177 -14.55509 -14.29143 -13.55153 -13.20072 -12.88478 -12.84038 -12.46896 -12.24915 -12.18474 -12.03219 -11.35405 -11.22527 -10.92866 -10.70806 -10.58699 -10.41219 -10.29237 -10.25103 -10.14545 -9.47842 -9.28005 -9.00352 -8.66377 -8.48703 -7.18753 -6.09771 -4.13910 2.92891 3.30547 3.35286 3.39390 3.54229 4.00583 4.40700 4.70944 4.80919 4.83125 5.06534 5.10266 5.16665 5.20701 5.28801 5.46643 5.59399 5.74568 5.83723 5.94755 5.97476 6.03147 6.11027 6.12825 6.22711 6.31746 6.49086 6.61483 6.75915 6.79039 6.92976 7.19813 7.51533 7.62747 7.79491 7.85250 8.10084 8.30895 8.92789 8.99935 9.50773 10.98229 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033550 B = 0.006283 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.374154 B = 4455.366349 C = 4993.428403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.105 3.895 10 H 0.072 0.928 11 C -0.110 4.110 12 C -0.136 4.136 13 C 0.111 3.889 14 N -0.461 5.461 15 C 0.033 3.967 16 C -0.042 4.042 17 N -0.494 5.494 18 C 0.178 3.822 19 C -0.024 4.024 20 C -0.120 4.120 21 C -0.143 4.143 22 C -0.123 4.123 23 H 0.264 0.736 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.164 0.836 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -13.643 0.219 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.085 3.915 10 H 0.090 0.910 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.012 4.012 14 N -0.146 5.146 15 C -0.081 4.081 16 C -0.187 4.187 17 N -0.214 5.214 18 C -0.082 4.082 19 C -0.044 4.044 20 C -0.159 4.159 21 C -0.180 4.180 22 C -0.162 4.162 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.181 0.819 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.638 -13.713 -0.352 14.192 hybrid contribution -0.132 1.112 0.862 1.413 sum 3.506 -12.601 0.510 13.090 Atomic orbital electron populations 1.69915 1.06003 1.27090 1.49868 1.24973 0.94846 0.99270 0.94448 0.86607 0.79602 0.82697 0.78866 1.19952 1.21268 1.20233 1.20875 0.93287 0.89374 1.50694 0.92448 1.17691 0.95027 0.89380 0.89398 0.90981 1.21860 1.00182 0.91690 1.01146 1.21986 0.96675 0.97850 1.00829 1.21796 0.96410 0.96774 0.86208 1.45291 1.38352 1.10320 1.20607 1.22454 1.03388 0.83798 0.98459 1.21646 1.02530 0.96298 0.98266 1.70173 1.24792 1.00315 1.26105 1.22502 0.99480 0.96285 0.89970 1.20765 0.97515 0.87396 0.98745 1.22896 0.94764 0.98132 1.00068 1.22816 0.97115 0.97232 1.00852 1.22928 0.96657 0.98368 0.98232 0.92663 0.93385 0.91408 0.91268 0.91587 0.90732 0.91000 0.81874 0.88986 0.88576 0.91886 0.90528 0.91321 0.91884 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 12.86 55.43 0.71 -24.20 16 2 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.50 -13.53 8.00 -34.44 -0.28 -13.81 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.10 2.57 2.56 -92.66 -0.24 2.33 16 10 H 0.07 1.96 7.41 -51.93 -0.39 1.57 16 11 C -0.11 -2.34 5.27 -26.41 -0.14 -2.48 16 12 C -0.14 -2.26 5.92 -26.49 -0.16 -2.42 16 13 C 0.11 1.74 6.51 -3.88 -0.03 1.72 16 14 N -0.46 -9.07 3.13 -109.39 -0.34 -9.41 16 15 C 0.03 0.76 6.08 -81.73 -0.50 0.26 16 16 C -0.04 -0.99 11.42 -17.96 -0.21 -1.19 16 17 N -0.49 -10.68 10.84 -11.02 -0.12 -10.80 16 18 C 0.18 3.39 7.01 -155.75 -1.09 2.30 16 19 C -0.02 -0.34 4.08 -90.96 -0.37 -0.71 16 20 C -0.12 -1.56 7.62 -25.92 -0.20 -1.75 16 21 C -0.14 -1.51 8.08 -25.92 -0.21 -1.72 16 22 C -0.12 -1.55 7.63 -25.92 -0.20 -1.75 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 25 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.16 3.79 8.06 -52.49 -0.42 3.37 16 31 H 0.09 1.14 7.81 -51.93 -0.41 0.73 16 32 H 0.10 1.44 7.75 -51.93 -0.40 1.04 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 LS Contribution 299.89 15.07 4.52 4.52 Total: -1.00 -29.31 299.89 -9.76 -39.07 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.80 Total: 2.33 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -3.70 Total: -17.52 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.25 Total: -44.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.31 -9.76 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089589.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.389 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds