Wall clock time and date at job start Mon Mar 30 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99812 * 2 1 4 4 H 1.48503 * 109.46945 * 239.99806 * 3 2 1 5 5 H 1.48498 * 109.46937 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47185 * 119.99750 * 3 2 1 7 7 C 1.37880 * 120.00494 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99991 * 185.14278 * 7 2 1 9 9 C 1.50697 * 119.99409 * 5.14504 * 7 2 1 10 10 H 1.08993 * 109.74767 * 25.54701 * 9 7 2 11 11 C 1.53500 * 109.74335 * 264.87100 * 9 7 2 12 12 C 1.53114 * 109.33664 * 191.59887 * 11 9 7 13 13 C 1.53348 * 109.67262 * 69.89161 * 12 11 9 14 14 N 1.46474 * 108.70622 * 309.24269 * 13 12 11 15 15 C 1.37185 * 124.32814 * 17.27459 * 14 13 12 16 16 C 1.33860 * 107.09743 * 180.17247 * 15 14 13 17 17 N 1.34419 * 107.79898 * 359.94391 * 16 15 14 18 18 C 1.30790 * 109.32178 * 0.02562 * 17 16 15 19 19 C 1.50707 * 125.72420 * 180.09410 * 18 17 16 20 20 C 1.53782 * 113.61370 * 37.45554 * 19 18 17 21 21 C 1.53780 * 87.07799 * 220.01758 * 20 19 18 22 22 C 1.53778 * 113.61030 * 299.95824 * 19 18 17 23 23 H 0.97002 * 119.99907 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.49802 * 311.57372 * 11 9 7 25 25 H 1.09004 * 109.49018 * 71.63455 * 11 9 7 26 26 H 1.09005 * 109.42653 * 189.99573 * 12 11 9 27 27 H 1.08994 * 109.43439 * 309.84813 * 12 11 9 28 28 H 1.08993 * 109.58941 * 189.47644 * 13 12 11 29 29 H 1.08999 * 109.59616 * 69.00929 * 13 12 11 30 30 H 1.07998 * 126.09762 * 179.90412 * 16 15 14 31 31 H 1.08995 * 112.84690 * 168.76347 * 19 18 17 32 32 H 1.09003 * 113.61369 * 334.56578 * 20 19 18 33 33 H 1.08999 * 113.61350 * 105.46855 * 20 19 18 34 34 H 1.08999 * 113.61875 * 270.87970 * 21 20 19 35 35 H 1.09011 * 113.61019 * 139.97997 * 21 20 19 36 36 H 1.09001 * 113.61396 * 254.52390 * 22 19 18 37 37 H 1.09001 * 113.62200 * 25.35059 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0844 9 6 1.2557 -2.4965 -0.1159 10 1 0.3071 -2.3315 -0.6267 11 6 0.9979 -3.0733 1.2830 12 6 0.5028 -4.5163 1.1531 13 6 1.6481 -5.4133 0.6680 14 7 2.2510 -4.8042 -0.5198 15 6 2.0824 -3.4932 -0.8871 16 6 2.7760 -3.3087 -2.0170 17 7 3.3585 -4.4771 -2.3370 18 6 3.0455 -5.3765 -1.4405 19 6 3.5010 -6.8131 -1.4390 20 6 4.9489 -7.0007 -1.9218 21 6 4.4562 -8.2554 -2.6620 22 6 3.0660 -7.5985 -2.6874 23 1 -0.4850 0.8401 -0.0004 24 1 1.9226 -3.0563 1.8596 25 1 0.2420 -2.4735 1.7900 26 1 0.1518 -4.8679 2.1234 27 1 -0.3169 -4.5553 0.4359 28 1 1.2581 -6.3993 0.4153 29 1 2.3987 -5.5046 1.4530 30 1 2.8533 -2.3858 -2.5727 31 1 3.2818 -7.3255 -0.5023 32 1 5.2936 -6.2087 -2.5867 33 1 5.6528 -7.2162 -1.1180 34 1 4.4995 -9.1629 -2.0599 35 1 4.8980 -8.3807 -3.6507 36 1 2.2498 -8.2967 -2.5016 37 1 2.8945 -6.9697 -3.5612 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261089589.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:55 Heat of formation + Delta-G solvation = 45.941551 kcal Electronic energy + Delta-G solvation = -18038.519502 eV Core-core repulsion = 15394.831809 eV Total energy + Delta-G solvation = -2643.687693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.13173 -39.34309 -37.43531 -35.31019 -33.12774 -31.25769 -29.38514 -27.08740 -26.44799 -26.09197 -24.00113 -22.70397 -21.81891 -19.84942 -19.61776 -18.56361 -17.91960 -16.61298 -16.55090 -16.01205 -15.60380 -15.09377 -14.74231 -14.62858 -14.48282 -14.08982 -13.37863 -13.30799 -13.27454 -13.04150 -12.89230 -12.71909 -12.32887 -12.11809 -11.83203 -11.71753 -11.39901 -11.30607 -11.19349 -11.15756 -10.72263 -10.52182 -10.20855 -8.92783 -8.17168 -6.28090 1.32747 1.40755 1.42272 1.50107 2.07384 2.29146 2.43156 3.11850 3.52076 3.70775 3.83819 3.85137 3.97273 4.00153 4.10435 4.21374 4.31792 4.53849 4.67204 4.72744 4.74721 4.80007 4.89712 4.98054 5.03871 5.11594 5.12405 5.16732 5.20769 5.33283 5.50100 5.52735 5.66525 5.75982 5.81830 6.01943 6.27619 6.61656 6.82445 7.33776 7.39050 8.89507 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033550 B = 0.006283 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.374154 B = 4455.366349 C = 4993.428403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.043 0.957 9 C 0.105 3.895 10 H 0.034 0.966 11 C -0.103 4.103 12 C -0.126 4.126 13 C 0.104 3.896 14 N -0.462 5.462 15 C 0.010 3.990 16 C -0.066 4.066 17 N -0.522 5.522 18 C 0.197 3.803 19 C -0.032 4.032 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.123 4.123 23 H 0.265 0.735 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -16.647 1.415 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.061 0.939 9 C 0.085 3.915 10 H 0.052 0.948 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.017 4.017 14 N -0.146 5.146 15 C -0.105 4.105 16 C -0.211 4.211 17 N -0.242 5.242 18 C -0.065 4.065 19 C -0.052 4.052 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.162 4.162 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.345 -16.722 0.860 17.299 hybrid contribution -0.324 1.973 0.457 2.051 sum 4.020 -14.749 1.317 15.344 Atomic orbital electron populations 1.70017 1.07167 1.27773 1.50921 1.25660 0.95606 1.02240 0.94269 0.85685 0.78508 0.79108 0.78848 1.20019 1.20480 1.19508 1.21083 0.92746 0.91116 1.50598 0.93864 1.17483 0.93237 0.89541 0.91229 0.94789 1.21634 0.99478 0.94712 0.98349 1.21902 0.96785 0.94812 1.02899 1.22194 0.96420 0.97807 0.85232 1.45513 1.38279 1.09008 1.21760 1.22067 1.04243 0.85516 0.98719 1.21592 1.03771 0.96817 0.98875 1.70160 1.26013 1.00213 1.27779 1.23555 0.97005 0.97756 0.88160 1.21256 0.98502 0.84351 1.01118 1.22875 0.94282 0.98708 1.00461 1.22779 0.94790 0.97003 1.01394 1.22888 0.98890 0.98247 0.96162 0.92605 0.93801 0.93454 0.87209 0.92548 0.86583 0.88791 0.83640 0.85689 0.91482 0.90182 0.87489 0.90745 0.89626 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 12.86 21.45 0.28 -53.06 16 2 C 0.02 1.21 5.45 84.66 0.46 1.67 16 3 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.52 -29.01 8.00 25.60 0.20 -28.81 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 9 C 0.10 5.37 2.56 -12.11 -0.03 5.34 16 10 H 0.03 1.97 7.41 -2.39 -0.02 1.96 16 11 C -0.10 -4.42 5.27 30.80 0.16 -4.26 16 12 C -0.13 -3.94 5.92 30.75 0.18 -3.76 16 13 C 0.10 2.89 6.51 86.50 0.56 3.45 16 14 N -0.46 -17.56 3.13 -500.00 -1.57 -19.13 16 15 C 0.01 0.46 6.08 40.73 0.25 0.70 16 16 C -0.07 -3.22 11.42 83.30 0.95 -2.27 16 17 N -0.52 -23.00 10.84 -188.77 -2.05 -25.05 16 18 C 0.20 7.26 7.01 138.25 0.97 8.23 16 19 C -0.03 -0.81 4.08 -11.01 -0.04 -0.85 16 20 C -0.12 -2.88 7.62 31.12 0.24 -2.64 16 21 C -0.12 -2.09 8.08 31.12 0.25 -1.84 16 22 C -0.12 -2.70 7.63 31.12 0.24 -2.47 16 23 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.04 1.87 8.08 -2.39 -0.02 1.85 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 27 H 0.06 1.88 8.11 -2.39 -0.02 1.86 16 28 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.15 7.37 8.06 -2.91 -0.02 7.34 16 31 H 0.13 2.36 7.81 -2.39 -0.02 2.34 16 32 H 0.07 1.95 7.75 -2.39 -0.02 1.93 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 Total: -1.00 -67.84 299.89 4.12 -63.73 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.04 Total: 14.72 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 4.39 Total: -27.51 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.34 Total: -97.23 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.84 4.12 -63.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261089589.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.667 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds