Wall clock time and date at job start Mon Mar 30 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 C 1.50690 * 109.47166 * 239.99938 * 2 1 3 5 5 H 1.08007 * 119.99941 * 245.45473 * 4 2 1 6 6 C 1.37875 * 120.00494 * 65.46426 * 4 2 1 7 7 N 1.31518 * 119.99731 * 9.59393 * 6 4 2 8 8 Si 1.86799 * 120.00578 * 189.59190 * 6 4 2 9 9 H 1.48503 * 109.46579 * 84.99297 * 8 6 4 10 10 H 1.48493 * 109.47474 * 204.98986 * 8 6 4 11 11 H 1.48501 * 109.46863 * 324.99683 * 8 6 4 12 12 C 1.50703 * 109.46946 * 119.99564 * 2 1 3 13 13 C 1.38008 * 119.89279 * 60.02635 * 12 2 1 14 14 C 1.38245 * 119.96116 * 179.97438 * 13 12 2 15 15 C 1.38145 * 119.98219 * 0.09604 * 14 13 12 16 16 C 1.38469 * 120.31357 * 359.97166 * 15 14 13 17 17 C 1.38413 * 119.83590 * 359.85129 * 16 15 14 18 18 O 1.35842 * 121.79729 * 180.31539 * 17 16 15 19 19 C 1.42827 * 117.87285 * 342.82346 * 18 17 16 20 20 H 1.09001 * 109.67528 * 289.34747 * 19 18 17 21 21 C 1.53004 * 109.67489 * 168.84252 * 19 18 17 22 22 C 1.53397 * 108.43106 * 49.09598 * 19 18 17 23 23 C 1.50769 * 118.75849 * 179.63736 * 16 15 14 24 24 H 1.09006 * 109.47196 * 63.26231 * 1 2 3 25 25 H 1.09001 * 109.46713 * 183.26074 * 1 2 3 26 26 H 1.09003 * 109.47277 * 303.25418 * 1 2 3 27 27 H 0.97006 * 120.00085 * 180.02562 * 7 6 4 28 28 H 1.07994 * 120.01996 * 0.02562 * 13 12 2 29 29 H 1.08002 * 120.01224 * 180.02562 * 14 13 12 30 30 H 1.08006 * 119.84523 * 179.97438 * 15 14 13 31 31 H 1.09000 * 109.47264 * 60.51230 * 21 19 18 32 32 H 1.08996 * 109.47051 * 300.50970 * 21 19 18 33 33 H 1.09001 * 109.46619 * 180.50605 * 21 19 18 34 34 H 1.09002 * 109.69924 * 55.01622 * 22 19 18 35 35 H 1.08998 * 109.69637 * 175.61214 * 22 19 18 36 36 H 1.09002 * 109.43749 * 282.36039 * 23 16 15 37 37 H 1.08999 * 109.44304 * 42.28367 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7947 -0.1774 -2.4795 7 7 1.3001 1.0359 -2.5935 8 14 2.1752 -1.1784 -4.0101 9 1 1.0226 -2.0607 -4.3236 10 1 2.4222 -0.2621 -5.1522 11 1 3.3832 -2.0084 -3.7710 12 6 2.0323 -0.7103 1.2306 13 6 1.6980 -2.0318 1.4466 14 6 2.1584 -2.6849 2.5747 15 6 2.9510 -2.0139 3.4857 16 6 3.2886 -0.6876 3.2749 17 6 2.8321 -0.0321 2.1446 18 8 3.1441 1.2663 1.8951 19 6 3.6329 2.0559 2.9801 20 1 2.8250 2.2506 3.6855 21 6 4.1816 3.3809 2.4468 22 6 4.7537 1.2771 3.6804 23 6 4.1486 0.0130 4.2960 24 1 -0.3634 0.4624 -0.9178 25 1 -0.3633 -1.0260 0.0585 26 1 -0.3634 0.5635 0.8594 27 1 1.1326 1.4108 -3.4724 28 1 1.0777 -2.5555 0.7344 29 1 1.8976 -3.7191 2.7443 30 1 3.3092 -2.5262 4.3664 31 1 3.3848 3.9273 1.9422 32 1 4.9889 3.1823 1.7419 33 1 4.5618 3.9769 3.2764 34 1 5.5187 1.0016 2.9544 35 1 5.1949 1.8930 4.4640 36 1 3.5393 0.2858 5.1576 37 1 4.9497 -0.6539 4.6147 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092187.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:32 Heat of formation + Delta-G solvation = -53.425821 kcal Electronic energy + Delta-G solvation = -18171.624311 eV Core-core repulsion = 15491.334974 eV Total energy + Delta-G solvation = -2680.289337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.57602 -38.67947 -36.50965 -34.93826 -33.18957 -32.56292 -29.67877 -28.99545 -27.16706 -24.92205 -24.28112 -23.68867 -21.40514 -20.50775 -18.69112 -18.17412 -17.34356 -16.61321 -16.36040 -15.73598 -15.16986 -14.93331 -14.89071 -14.39907 -14.26253 -14.00086 -13.55700 -13.43608 -13.18734 -13.06402 -12.89385 -12.77613 -12.66822 -12.35069 -12.21587 -11.97340 -11.75080 -11.59345 -11.42577 -11.01681 -10.82671 -10.42480 -9.31917 -8.82738 -8.10390 -6.20047 0.58301 0.70517 1.39227 1.40336 1.50015 2.43063 2.52162 3.00105 3.18635 3.73116 3.84107 3.91088 4.05401 4.22227 4.36057 4.45409 4.47968 4.63542 4.70408 4.73062 4.81012 4.85244 4.91855 4.97307 5.00909 5.12893 5.21178 5.25040 5.26403 5.39498 5.50706 5.57101 5.67323 5.76304 5.96251 6.11291 6.14276 6.39021 6.82328 6.90189 7.45105 8.97155 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.007891 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.968824 B = 3547.691100 C = 4235.462154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.078 3.922 3 H 0.009 0.991 4 C -0.520 4.520 5 H 0.048 0.952 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.271 1.271 12 C -0.099 4.099 13 C -0.103 4.103 14 C -0.153 4.153 15 C -0.105 4.105 16 C -0.172 4.172 17 C 0.098 3.902 18 O -0.337 6.337 19 C 0.069 3.931 20 H 0.071 0.929 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.070 4.070 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.021 0.979 27 H 0.261 0.739 28 H 0.116 0.884 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.582 -1.372 15.418 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.059 3.941 3 H 0.027 0.973 4 C -0.558 4.558 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.100 4.100 13 C -0.121 4.121 14 C -0.171 4.171 15 C -0.123 4.123 16 C -0.173 4.173 17 C 0.053 3.947 18 O -0.253 6.253 19 C 0.013 3.987 20 H 0.089 0.911 21 C -0.198 4.198 22 C -0.183 4.183 23 C -0.107 4.107 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.523 -1.119 15.113 16.129 hybrid contribution -0.107 -0.204 -1.339 1.359 sum 5.416 -1.323 13.774 14.859 Atomic orbital electron populations 1.21564 0.97857 0.98937 0.98625 1.17513 0.92349 0.94660 0.89536 0.97301 1.21375 1.35367 1.07586 0.91427 0.93350 1.25751 0.95390 0.95556 1.01867 1.70119 1.46219 1.15297 1.24176 0.85658 0.78795 0.78755 0.79020 1.19487 1.20889 1.19604 1.20108 0.97579 0.95493 0.96790 1.20900 1.00226 0.93079 0.97933 1.21271 1.00299 1.00918 0.94568 1.21108 0.98252 0.92874 1.00019 1.20169 1.03557 0.96388 0.97163 1.18837 0.96379 0.84142 0.95297 1.86118 1.80522 1.20095 1.38518 1.22791 0.96466 0.91528 0.87891 0.91148 1.21809 1.01046 0.94077 1.02826 1.22252 0.97312 0.97449 1.01310 1.20532 0.98291 0.96180 0.95692 0.94145 0.94091 0.95975 0.93035 0.86586 0.83623 0.82785 0.93059 0.92684 0.86973 0.92134 0.86501 0.88997 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 8.93 71.98 0.64 -5.18 16 2 C 0.08 4.33 2.29 -12.29 -0.03 4.31 16 3 H 0.01 0.56 6.84 -2.38 -0.02 0.54 16 4 C -0.52 -30.63 8.18 25.60 0.21 -30.42 16 5 H 0.05 2.84 7.55 -2.91 -0.02 2.82 16 6 C 0.01 0.75 5.17 84.65 0.44 1.19 16 7 N -0.92 -56.28 12.16 21.45 0.26 -56.02 16 8 Si 0.95 45.63 29.55 68.60 2.03 47.66 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 12 C -0.10 -4.74 4.77 -19.71 -0.09 -4.83 16 13 C -0.10 -4.28 8.60 22.22 0.19 -4.09 16 14 C -0.15 -4.96 10.04 22.25 0.22 -4.73 16 15 C -0.10 -3.08 9.67 22.30 0.22 -2.86 16 16 C -0.17 -5.70 5.75 -19.75 -0.11 -5.81 16 17 C 0.10 4.22 6.46 22.52 0.15 4.37 16 18 O -0.34 -14.73 8.57 -91.78 -0.79 -15.52 16 19 C 0.07 2.07 3.42 30.73 0.11 2.18 16 20 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 21 C -0.14 -3.63 9.59 71.98 0.69 -2.94 16 22 C -0.15 -3.41 5.49 30.75 0.17 -3.24 16 23 C -0.07 -1.62 5.86 29.89 0.18 -1.45 16 24 H 0.04 2.26 6.84 -2.38 -0.02 2.24 16 25 H 0.04 1.96 7.27 -2.39 -0.02 1.94 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.26 15.09 8.31 -92.70 -0.77 14.31 16 28 H 0.12 4.86 7.54 -2.91 -0.02 4.83 16 29 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -70.92 299.55 5.50 -65.42 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.03 Total: 11.98 kcal Atomic # 6 Polarization: -56.50 SS G_CDS: 2.97 Total: -53.53 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.26 Total: -56.02 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.79 Total: -15.52 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -70.92 5.50 -65.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092187.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.994 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds