Wall clock time and date at job start Mon Mar 30 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46764 * 2 1 4 4 C 1.50694 * 109.47477 * 119.99888 * 2 1 3 5 5 H 1.08005 * 120.00254 * 119.99882 * 4 2 1 6 6 C 1.37879 * 120.00127 * 300.00257 * 4 2 1 7 7 N 1.31510 * 119.99746 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00027 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46903 * 90.00280 * 8 6 4 10 10 H 1.48493 * 109.47166 * 210.00129 * 8 6 4 11 11 H 1.48502 * 109.47186 * 330.00327 * 8 6 4 12 12 C 1.50701 * 109.47328 * 240.00454 * 2 1 3 13 13 C 1.38015 * 119.89065 * 299.99757 * 12 2 1 14 14 C 1.38245 * 119.95983 * 180.02562 * 13 12 2 15 15 C 1.38145 * 119.98249 * 359.92852 * 14 13 12 16 16 C 1.38464 * 120.31510 * 359.97205 * 15 14 13 17 17 C 1.38406 * 119.83188 * 0.14166 * 16 15 14 18 18 O 1.35853 * 121.80045 * 179.66178 * 17 16 15 19 19 C 1.42822 * 117.86136 * 17.18037 * 18 17 16 20 20 H 1.09004 * 109.68365 * 70.58783 * 19 18 17 21 21 C 1.52995 * 109.68309 * 191.10655 * 19 18 17 22 22 C 1.53408 * 108.37982 * 310.83300 * 19 18 17 23 23 C 1.50767 * 118.76466 * 180.24629 * 16 15 14 24 24 H 1.08998 * 109.46818 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47036 * 299.99502 * 1 2 3 26 26 H 1.08997 * 109.47130 * 59.99807 * 1 2 3 27 27 H 0.97002 * 120.00012 * 180.02562 * 7 6 4 28 28 H 1.08006 * 120.01972 * 359.75907 * 13 12 2 29 29 H 1.08000 * 120.01013 * 179.89963 * 14 13 12 30 30 H 1.08001 * 119.84183 * 179.97438 * 15 14 13 31 31 H 1.09005 * 109.47135 * 60.00282 * 21 19 18 32 32 H 1.09001 * 109.47273 * 180.02562 * 21 19 18 33 33 H 1.08997 * 109.47378 * 300.00202 * 21 19 18 34 34 H 1.09000 * 109.69636 * 184.43668 * 22 19 18 35 35 H 1.09001 * 109.69771 * 304.98091 * 22 19 18 36 36 H 1.09001 * 109.43866 * 77.63959 * 23 16 15 37 37 H 1.08996 * 109.44312 * 317.76487 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.6298 -0.5457 4.4123 10 1 1.3434 -0.9493 5.1120 11 1 2.4862 -2.5662 3.7119 12 6 2.0324 -0.7103 -1.2305 13 6 1.6977 -2.0317 -1.4468 14 6 2.1582 -2.6848 -2.5748 15 6 2.9516 -2.0141 -3.4853 16 6 3.2890 -0.6878 -3.2747 17 6 2.8314 -0.0320 -2.1450 18 8 3.1435 1.2664 -1.8953 19 6 3.6338 2.0556 -2.9800 20 1 2.8272 2.2494 -3.6870 21 6 4.1812 3.3810 -2.4467 22 6 4.7563 1.2758 -3.6768 23 6 4.1522 0.0119 -4.2937 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7087 1.1612 3.4844 28 1 1.0799 -2.5564 -0.7329 29 1 1.8981 -3.7193 -2.7440 30 1 3.3105 -2.5267 -4.3656 31 1 4.9936 3.1835 -1.7473 32 1 4.5540 3.9806 -3.2772 33 1 3.3857 3.9234 -1.9358 34 1 5.1998 1.8911 -4.4596 35 1 5.5197 1.0013 -2.9487 36 1 3.5455 0.2842 -5.1573 37 1 4.9535 -0.6558 -4.6102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:35 Heat of formation + Delta-G solvation = -35.666487 kcal Electronic energy + Delta-G solvation = -18170.311441 eV Core-core repulsion = 15490.792206 eV Total energy + Delta-G solvation = -2679.519235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.20662 -37.24046 -34.86024 -33.40797 -31.64625 -30.91770 -27.94407 -27.75691 -25.02761 -23.73502 -22.70212 -22.24623 -19.89363 -19.01015 -17.29583 -16.09697 -15.90255 -15.10015 -14.65613 -14.37245 -13.90556 -13.53095 -13.45883 -12.94812 -12.65297 -12.41496 -12.34318 -11.95758 -11.78268 -11.46430 -11.24423 -11.05033 -10.85608 -10.63294 -10.55983 -10.42715 -10.24435 -10.08506 -9.89547 -9.20706 -8.87631 -8.26256 -7.84645 -7.31907 -5.91337 -3.96886 2.02766 2.16508 3.35071 3.41233 3.45024 3.79341 4.40292 4.53766 4.83496 4.92333 5.01529 5.31863 5.34536 5.39848 5.51667 5.59643 5.71020 5.74956 5.80358 5.88102 5.98324 6.13238 6.26662 6.28465 6.31867 6.51732 6.73769 6.90639 6.97171 7.05985 7.26075 7.29750 7.35199 7.63100 7.81888 8.08523 8.18221 8.26554 8.50963 9.05734 9.66188 11.14414 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.007827 C = 0.006639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.537184 B = 3576.426005 C = 4216.713844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.076 3.924 3 H 0.046 0.954 4 C -0.502 4.502 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.057 4.057 13 C -0.086 4.086 14 C -0.156 4.156 15 C -0.115 4.115 16 C -0.172 4.172 17 C 0.121 3.879 18 O -0.298 6.298 19 C 0.084 3.916 20 H 0.064 0.936 21 C -0.144 4.144 22 C -0.153 4.153 23 C -0.071 4.071 24 H 0.026 0.974 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.259 0.741 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 0.391 -12.824 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.540 4.540 5 H 0.073 0.927 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.057 4.057 13 C -0.104 4.104 14 C -0.175 4.175 15 C -0.133 4.133 16 C -0.173 4.173 17 C 0.076 3.924 18 O -0.212 6.212 19 C 0.028 3.972 20 H 0.082 0.918 21 C -0.202 4.202 22 C -0.190 4.190 23 C -0.108 4.108 24 H 0.045 0.955 25 H 0.103 0.897 26 H 0.025 0.975 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.802 0.619 -12.504 13.409 hybrid contribution 0.438 -0.613 0.622 0.977 sum 5.240 0.006 -11.882 12.986 Atomic orbital electron populations 1.21783 0.97897 0.99008 1.00094 1.17762 0.92426 0.96230 0.87855 0.93595 1.21136 1.30805 1.12083 0.89979 0.92673 1.24941 0.95190 0.95055 0.98789 1.69895 1.36868 1.22995 1.23163 0.86621 0.78568 0.80114 0.82872 1.20780 1.21281 1.19947 1.20280 0.94486 0.94127 0.96822 1.20899 0.99321 0.93772 0.96417 1.20929 1.01103 0.99495 0.95951 1.20570 1.00013 0.93401 0.99332 1.19637 1.04148 0.95696 0.97810 1.18613 0.95888 0.83645 0.94224 1.86154 1.79918 1.19597 1.35544 1.22361 0.95222 0.91086 0.88548 0.91824 1.21763 1.02079 0.94623 1.01685 1.22267 0.98726 0.97175 1.00877 1.20378 0.97916 0.96014 0.96477 0.95479 0.89681 0.97497 0.93106 0.85547 0.87011 0.87192 0.91543 0.91089 0.91308 0.90566 0.90598 0.91335 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.78 37.16 0.33 -2.95 16 2 C 0.08 1.99 2.42 -92.93 -0.23 1.77 16 3 H 0.05 1.33 6.89 -51.92 -0.36 0.97 16 4 C -0.50 -14.17 8.23 -34.44 -0.28 -14.45 16 5 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.06 -1.31 4.76 -104.38 -0.50 -1.81 16 13 C -0.09 -1.79 8.69 -39.66 -0.34 -2.13 16 14 C -0.16 -2.75 10.04 -39.61 -0.40 -3.15 16 15 C -0.11 -1.91 9.67 -39.53 -0.38 -2.29 16 16 C -0.17 -3.05 5.75 -104.44 -0.60 -3.65 16 17 C 0.12 2.56 6.46 -39.20 -0.25 2.31 16 18 O -0.30 -6.19 8.57 -19.28 -0.17 -6.36 16 19 C 0.08 1.29 3.42 -26.52 -0.09 1.20 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.14 -1.86 9.59 37.16 0.36 -1.50 16 22 C -0.15 -1.99 5.49 -26.48 -0.15 -2.14 16 23 C -0.07 -0.96 5.86 -27.81 -0.16 -1.12 16 24 H 0.03 0.64 7.38 -51.93 -0.38 0.25 16 25 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.13 2.62 7.57 -52.48 -0.40 2.22 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -30.40 298.42 -8.49 -38.89 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.64 Total: -0.19 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -2.79 Total: -28.30 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.63 Total: -25.29 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.17 Total: -6.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.40 -8.49 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.228 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds