Wall clock time and date at job start Mon Mar 30 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47304 * 270.00872 * 3 2 1 5 5 H 1.48505 * 109.47040 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47021 * 150.00393 * 3 2 1 7 7 C 1.37880 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00111 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99807 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.52685 * 59.91066 * 9 7 2 11 11 C 1.53120 * 109.50002 * 179.97438 * 9 7 2 12 12 C 1.53282 * 109.70536 * 189.86653 * 11 9 7 13 13 N 1.46475 * 108.68936 * 309.23005 * 12 11 9 14 14 C 1.37180 * 124.32630 * 17.22454 * 13 12 11 15 15 C 1.33869 * 107.09388 * 180.18490 * 14 13 12 16 16 N 1.34420 * 107.79689 * 0.21765 * 15 14 13 17 17 C 1.30790 * 109.32580 * 359.55228 * 16 15 14 18 18 C 1.50697 * 125.72793 * 180.18909 * 17 16 15 19 19 C 1.53775 * 113.61569 * 39.49906 * 18 17 16 20 20 C 1.53950 * 87.02205 * 220.05012 * 19 18 17 21 21 C 1.53777 * 87.11138 * 25.36172 * 20 19 18 22 22 C 1.50706 * 124.22568 * 0.27664 * 14 13 12 23 23 H 0.96996 * 119.99976 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.42792 * 69.79126 * 11 9 7 25 25 H 1.08999 * 109.42525 * 309.93560 * 11 9 7 26 26 H 1.08998 * 109.59939 * 189.46319 * 12 11 9 27 27 H 1.08998 * 109.72920 * 69.06481 * 12 11 9 28 28 H 1.08002 * 126.09746 * 179.97438 * 15 14 13 29 29 H 1.08998 * 112.85007 * 170.69437 * 18 17 16 30 30 H 1.09001 * 113.61439 * 334.57212 * 19 18 17 31 31 H 1.08998 * 113.61596 * 105.46530 * 19 18 17 32 32 H 1.09005 * 113.53899 * 270.81078 * 20 19 18 33 33 H 1.08994 * 113.74618 * 139.94537 * 20 19 18 34 34 H 1.08996 * 113.61805 * 220.09326 * 21 20 19 35 35 H 1.09003 * 113.68966 * 89.19896 * 21 20 19 36 36 H 1.08997 * 109.74822 * 135.31569 * 22 14 13 37 37 H 1.08999 * 109.74034 * 256.02979 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8762 -0.6792 0.8877 11 6 4.0227 -2.6374 -0.0010 12 6 5.5355 -2.6499 0.2457 13 7 6.1709 -1.7164 -0.6872 14 6 5.5034 -0.7335 -1.3729 15 6 6.4085 -0.0928 -2.1228 16 7 7.6031 -0.6704 -1.9078 17 6 7.4652 -1.6408 -1.0418 18 6 8.5704 -2.5298 -0.5329 19 6 9.8917 -1.7854 -0.2780 20 6 10.6050 -3.0129 -0.8733 21 6 9.3054 -3.2968 -1.6448 22 6 4.0234 -0.4742 -1.2564 23 1 -0.4850 0.8400 0.0004 24 1 3.8086 -3.0979 -0.9655 25 1 3.5220 -3.1992 0.7875 26 1 5.9247 -3.6544 0.0799 27 1 5.7438 -2.3415 1.2702 28 1 6.2130 0.7372 -2.7856 29 1 8.2571 -3.1605 0.2990 30 1 10.0059 -0.8813 -0.8761 31 1 10.1055 -1.6247 0.7787 32 1 10.8492 -3.7756 -0.1338 33 1 11.4484 -2.7615 -1.5162 34 1 9.0466 -4.3546 -1.6900 35 1 9.2578 -2.8075 -2.6177 36 1 3.8431 0.5969 -1.1663 37 1 3.5113 -0.8616 -2.1371 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:58 Heat of formation + Delta-G solvation = 69.216259 kcal Electronic energy + Delta-G solvation = -18032.646307 eV Core-core repulsion = 15389.967880 eV Total energy + Delta-G solvation = -2642.678426 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.96118 -38.47132 -36.30536 -33.30524 -31.76650 -30.00860 -28.30406 -25.99754 -25.62965 -24.09155 -23.38970 -20.88021 -20.52555 -18.88071 -18.30962 -17.00712 -16.73248 -15.43229 -15.29477 -14.63633 -14.58607 -13.64532 -13.46674 -13.34900 -12.76728 -12.63862 -12.45261 -12.42281 -12.28118 -12.26280 -11.38371 -11.11271 -10.83233 -10.58970 -10.47943 -10.35655 -10.34191 -9.98176 -9.60013 -9.48765 -9.13741 -9.02385 -8.64636 -7.66926 -6.18307 -4.19575 2.49136 3.19358 3.23992 3.34116 3.34516 3.50381 4.31779 4.48909 4.63377 4.66546 4.88791 4.96836 5.04076 5.12331 5.24312 5.31226 5.49329 5.54945 5.61834 5.79055 5.80474 5.84096 5.95223 5.97072 6.04556 6.07846 6.26922 6.37999 6.42650 6.49040 6.54362 6.91404 6.99307 7.19469 7.33627 7.57941 7.71536 8.37993 8.52069 8.83984 9.43156 10.94542 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042923 B = 0.006111 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.172974 B = 4580.431362 C = 4928.942256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.013 3.987 10 H 0.030 0.970 11 C -0.113 4.113 12 C 0.100 3.900 13 N -0.446 5.446 14 C 0.004 3.996 15 C -0.049 4.049 16 N -0.492 5.492 17 C 0.199 3.801 18 C -0.029 4.029 19 C -0.121 4.121 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.056 4.056 23 H 0.266 0.734 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.429 -5.609 -0.304 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.095 0.905 9 C -0.006 4.006 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.022 4.022 13 N -0.129 5.129 14 C -0.112 4.112 15 C -0.195 4.195 16 N -0.211 5.211 17 C -0.063 4.063 18 C -0.049 4.049 19 C -0.159 4.159 20 C -0.179 4.179 21 C -0.161 4.161 22 C -0.095 4.095 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.181 0.819 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.927 -5.376 -0.568 17.769 hybrid contribution -0.569 0.796 0.354 1.041 sum 16.358 -4.580 -0.214 16.988 Atomic orbital electron populations 1.69882 1.06267 1.27165 1.50046 1.24990 0.94680 0.98986 0.94156 0.86967 0.79913 0.83744 0.78529 1.20046 1.22088 1.19043 1.20937 0.88115 0.94695 1.51825 0.90546 1.19243 0.97309 0.91033 0.93001 0.95178 1.21822 0.90013 1.00588 1.02663 1.22120 0.96077 0.91754 0.92238 1.45282 1.07601 1.26278 1.33775 1.21693 0.97114 0.93466 0.98881 1.21730 0.88552 1.03971 1.05293 1.70202 1.25978 1.08773 1.16156 1.22679 0.83961 0.99942 0.99696 1.20879 0.90056 0.95353 0.98585 1.22932 0.93512 0.98260 1.01189 1.22837 0.97117 0.98243 0.99729 1.22922 0.95201 0.99690 0.98300 1.20898 0.85548 1.00868 1.02138 0.92446 0.91685 0.89991 0.90251 0.90412 0.81912 0.88457 0.88675 0.91616 0.90331 0.91178 0.91585 0.89164 0.91527 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.88 21.36 24.28 -169.99 -4.13 17.23 16 4 H -0.27 -6.45 6.98 56.52 0.39 -6.06 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.32 6.50 56.52 0.37 -5.96 16 7 C -0.52 -13.82 9.10 -34.44 -0.31 -14.13 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.01 0.30 1.71 -91.46 -0.16 0.14 16 10 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 11 C -0.11 -2.06 5.16 -26.52 -0.14 -2.19 16 12 C 0.10 1.55 6.49 -3.91 -0.03 1.52 16 13 N -0.45 -8.01 3.13 -109.43 -0.34 -8.36 16 14 C 0.00 0.08 6.57 -81.73 -0.54 -0.46 16 15 C -0.05 -0.94 11.84 -17.95 -0.21 -1.16 16 16 N -0.49 -9.21 10.89 -11.02 -0.12 -9.33 16 17 C 0.20 3.36 6.99 -155.75 -1.09 2.27 16 18 C -0.03 -0.36 4.08 -90.96 -0.37 -0.73 16 19 C -0.12 -1.37 7.63 -25.83 -0.20 -1.56 16 20 C -0.14 -1.31 8.09 -25.83 -0.21 -1.52 16 21 C -0.12 -1.36 7.63 -25.92 -0.20 -1.56 16 22 C -0.06 -1.21 4.87 -27.63 -0.13 -1.35 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.06 1.20 8.11 -51.93 -0.42 0.77 16 25 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 26 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.16 2.80 8.06 -52.49 -0.42 2.38 16 29 H 0.10 1.07 7.77 -51.93 -0.40 0.67 16 30 H 0.09 1.24 7.79 -51.93 -0.40 0.84 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 36 H 0.07 1.50 3.77 -51.93 -0.20 1.30 16 37 H 0.08 1.80 8.11 -51.93 -0.42 1.38 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -30.38 290.56 -8.73 -39.11 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.61 Total: 1.55 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.68 Total: -18.76 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.31 Total: -43.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.13 Total: 17.23 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.38 -8.73 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.323 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds