Wall clock time and date at job start Mon Mar 30 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47304 * 270.00872 * 3 2 1 5 5 H 1.48505 * 109.47040 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47021 * 150.00393 * 3 2 1 7 7 C 1.37880 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00111 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99807 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.52685 * 59.91066 * 9 7 2 11 11 C 1.53120 * 109.50002 * 179.97438 * 9 7 2 12 12 C 1.53282 * 109.70536 * 189.86653 * 11 9 7 13 13 N 1.46475 * 108.68936 * 309.23005 * 12 11 9 14 14 C 1.37180 * 124.32630 * 17.22454 * 13 12 11 15 15 C 1.33869 * 107.09388 * 180.18490 * 14 13 12 16 16 N 1.34420 * 107.79689 * 0.21765 * 15 14 13 17 17 C 1.30790 * 109.32580 * 359.55228 * 16 15 14 18 18 C 1.50697 * 125.72793 * 180.18909 * 17 16 15 19 19 C 1.53775 * 113.61569 * 39.49906 * 18 17 16 20 20 C 1.53950 * 87.02205 * 220.05012 * 19 18 17 21 21 C 1.53777 * 87.11138 * 25.36172 * 20 19 18 22 22 C 1.50706 * 124.22568 * 0.27664 * 14 13 12 23 23 H 0.96996 * 119.99976 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.42792 * 69.79126 * 11 9 7 25 25 H 1.08999 * 109.42525 * 309.93560 * 11 9 7 26 26 H 1.08998 * 109.59939 * 189.46319 * 12 11 9 27 27 H 1.08998 * 109.72920 * 69.06481 * 12 11 9 28 28 H 1.08002 * 126.09746 * 179.97438 * 15 14 13 29 29 H 1.08998 * 112.85007 * 170.69437 * 18 17 16 30 30 H 1.09001 * 113.61439 * 334.57212 * 19 18 17 31 31 H 1.08998 * 113.61596 * 105.46530 * 19 18 17 32 32 H 1.09005 * 113.53899 * 270.81078 * 20 19 18 33 33 H 1.08994 * 113.74618 * 139.94537 * 20 19 18 34 34 H 1.08996 * 113.61805 * 220.09326 * 21 20 19 35 35 H 1.09003 * 113.68966 * 89.19896 * 21 20 19 36 36 H 1.08997 * 109.74822 * 135.31569 * 22 14 13 37 37 H 1.08999 * 109.74034 * 256.02979 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8762 -0.6792 0.8877 11 6 4.0227 -2.6374 -0.0010 12 6 5.5355 -2.6499 0.2457 13 7 6.1709 -1.7164 -0.6872 14 6 5.5034 -0.7335 -1.3729 15 6 6.4085 -0.0928 -2.1228 16 7 7.6031 -0.6704 -1.9078 17 6 7.4652 -1.6408 -1.0418 18 6 8.5704 -2.5298 -0.5329 19 6 9.8917 -1.7854 -0.2780 20 6 10.6050 -3.0129 -0.8733 21 6 9.3054 -3.2968 -1.6448 22 6 4.0234 -0.4742 -1.2564 23 1 -0.4850 0.8400 0.0004 24 1 3.8086 -3.0979 -0.9655 25 1 3.5220 -3.1992 0.7875 26 1 5.9247 -3.6544 0.0799 27 1 5.7438 -2.3415 1.2702 28 1 6.2130 0.7372 -2.7856 29 1 8.2571 -3.1605 0.2990 30 1 10.0059 -0.8813 -0.8761 31 1 10.1055 -1.6247 0.7787 32 1 10.8492 -3.7756 -0.1338 33 1 11.4484 -2.7615 -1.5162 34 1 9.0466 -4.3546 -1.6900 35 1 9.2578 -2.8075 -2.6177 36 1 3.8431 0.5969 -1.1663 37 1 3.5113 -0.8616 -2.1371 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:58 Heat of formation + Delta-G solvation = 51.949184 kcal Electronic energy + Delta-G solvation = -18033.395063 eV Core-core repulsion = 15389.967880 eV Total energy + Delta-G solvation = -2643.427183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.33290 -39.39162 -37.87455 -35.01890 -33.61061 -31.47672 -29.72771 -27.47461 -26.46918 -25.57981 -24.87692 -22.22807 -21.99722 -19.96011 -19.72608 -18.94326 -18.07566 -16.83655 -16.61691 -16.10523 -15.68991 -15.29148 -15.08341 -14.74114 -14.56236 -14.26801 -13.88552 -13.40910 -13.33078 -13.29725 -12.96150 -12.74392 -12.34320 -12.08676 -11.74347 -11.71653 -11.40425 -11.31992 -11.24199 -11.20884 -10.90116 -10.69715 -10.38594 -9.10759 -8.35217 -6.39363 1.09860 1.27209 1.32694 1.41013 1.92030 2.10630 2.26599 2.99679 3.42621 3.67558 3.77083 3.81663 3.86078 3.89866 4.05692 4.08070 4.15240 4.36587 4.48690 4.52518 4.65579 4.71550 4.81408 4.84017 4.91747 4.96336 4.96588 5.10089 5.15540 5.27221 5.31747 5.46515 5.52750 5.58646 5.62862 5.82988 6.23482 6.38647 6.67874 7.13867 7.26849 8.81239 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.042923 B = 0.006111 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.172974 B = 4580.431362 C = 4928.942256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.022 3.978 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.517 4.517 8 H 0.044 0.956 9 C 0.012 3.988 10 H 0.023 0.977 11 C -0.108 4.108 12 C 0.103 3.897 13 N -0.452 5.452 14 C -0.024 4.024 15 C -0.055 4.055 16 N -0.515 5.515 17 C 0.212 3.788 18 C -0.038 4.038 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.048 4.048 23 H 0.267 0.733 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.173 0.827 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.387 -6.669 0.414 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.176 4.176 3 Si 0.763 3.237 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.182 1.182 7 C -0.555 4.555 8 H 0.063 0.937 9 C -0.007 4.007 10 H 0.041 0.959 11 C -0.146 4.146 12 C -0.018 4.018 13 N -0.134 5.134 14 C -0.140 4.140 15 C -0.201 4.201 16 N -0.235 5.235 17 C -0.050 4.050 18 C -0.058 4.058 19 C -0.161 4.161 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.086 4.086 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.190 0.810 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.896 -6.449 0.149 20.916 hybrid contribution -1.481 1.037 0.127 1.813 sum 18.415 -5.411 0.276 19.196 Atomic orbital electron populations 1.70012 1.07958 1.28073 1.52258 1.25732 0.95259 1.02409 0.94168 0.86033 0.78796 0.79749 0.79072 1.18943 1.22217 1.18181 1.21248 0.90643 0.93305 1.50266 0.93726 1.19180 0.94327 0.94099 0.93060 0.95917 1.21698 0.92545 0.97582 1.02787 1.22262 0.93558 0.93404 0.92577 1.45480 1.07911 1.26138 1.33908 1.21417 0.96230 0.95383 1.00933 1.22018 0.88809 1.04161 1.05124 1.70249 1.25681 1.09994 1.17559 1.23585 0.84362 0.99135 0.97945 1.21315 0.88999 0.95490 0.99973 1.22909 0.93205 0.98194 1.01833 1.22806 0.96274 0.97465 0.99663 1.22886 0.96083 1.00170 0.96912 1.20605 0.87120 0.99852 1.01058 0.92379 0.92271 0.89163 0.86305 0.88752 0.80953 0.85897 0.90974 0.90238 0.87859 0.90568 0.89848 0.91370 0.92653 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 2 C 0.02 1.27 5.45 84.66 0.46 1.74 16 3 Si 0.94 44.61 24.28 68.60 1.67 46.28 16 4 H -0.26 -12.02 6.98 99.48 0.69 -11.32 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.26 -11.80 6.50 99.48 0.65 -11.15 16 7 C -0.52 -28.17 9.10 25.60 0.23 -27.93 16 8 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 9 C 0.01 0.55 1.71 -11.34 -0.02 0.53 16 10 H 0.02 1.05 7.17 -2.39 -0.02 1.03 16 11 C -0.11 -3.79 5.16 30.73 0.16 -3.63 16 12 C 0.10 2.82 6.49 86.48 0.56 3.39 16 13 N -0.45 -15.13 3.13 -500.12 -1.57 -16.69 16 14 C -0.02 -0.95 6.57 40.73 0.27 -0.68 16 15 C -0.05 -2.06 11.84 83.30 0.99 -1.07 16 16 N -0.52 -18.60 10.89 -188.77 -2.06 -20.66 16 17 C 0.21 6.65 6.99 138.24 0.97 7.61 16 18 C -0.04 -0.82 4.08 -11.02 -0.04 -0.86 16 19 C -0.12 -2.39 7.63 31.18 0.24 -2.15 16 20 C -0.12 -1.80 8.09 31.18 0.25 -1.55 16 21 C -0.12 -2.28 7.63 31.12 0.24 -2.04 16 22 C -0.05 -2.06 4.87 30.01 0.15 -1.92 16 23 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 24 H 0.06 2.12 8.11 -2.39 -0.02 2.10 16 25 H 0.09 2.98 8.11 -2.39 -0.02 2.96 16 26 H 0.12 2.38 8.12 -2.39 -0.02 2.36 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.17 5.86 8.06 -2.91 -0.02 5.84 16 29 H 0.12 2.05 7.77 -2.39 -0.02 2.03 16 30 H 0.07 1.75 7.79 -2.39 -0.02 1.73 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 36 H 0.06 2.46 3.77 -2.39 -0.01 2.45 16 37 H 0.07 3.20 8.11 -2.39 -0.02 3.18 16 Total: -1.00 -67.08 290.56 3.76 -63.32 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.97 Total: 13.61 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.44 Total: -28.57 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -3.32 Total: -94.64 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.67 Total: 46.28 kcal Total: -67.08 3.76 -63.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.265 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds