Wall clock time and date at job start Mon Mar 30 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47087 * 269.99938 * 3 2 1 5 5 H 1.48503 * 109.47364 * 30.00290 * 3 2 1 6 6 H 1.48502 * 109.47079 * 150.00110 * 3 2 1 7 7 C 1.37872 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00127 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50123 * 300.07075 * 9 7 2 11 11 C 1.53119 * 109.49767 * 180.02562 * 9 7 2 12 12 C 1.53291 * 109.70222 * 170.10553 * 11 9 7 13 13 N 1.46471 * 108.69161 * 50.77280 * 12 11 9 14 14 C 1.37182 * 124.32356 * 342.75488 * 13 12 11 15 15 C 1.33869 * 107.09315 * 179.84354 * 14 13 12 16 16 N 1.34420 * 107.79689 * 0.32252 * 15 14 13 17 17 C 1.30790 * 109.32582 * 359.54764 * 16 15 14 18 18 C 1.50696 * 125.72787 * 180.12191 * 17 16 15 19 19 C 1.53785 * 113.61413 * 37.82100 * 18 17 16 20 20 C 1.53782 * 87.08065 * 220.01992 * 19 18 17 21 21 C 1.53777 * 113.61574 * 300.32071 * 18 17 16 22 22 C 1.50703 * 124.22795 * 359.77676 * 14 13 12 23 23 H 0.96995 * 120.00200 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.43023 * 50.03680 * 11 9 7 25 25 H 1.08996 * 109.39537 * 290.15101 * 11 9 7 26 26 H 1.08995 * 109.59842 * 291.01079 * 12 11 9 27 27 H 1.09004 * 109.72974 * 170.61443 * 12 11 9 28 28 H 1.08002 * 126.09746 * 180.02562 * 15 14 13 29 29 H 1.09000 * 112.84667 * 169.12192 * 18 17 16 30 30 H 1.08999 * 113.60924 * 334.56395 * 19 18 17 31 31 H 1.09002 * 113.61388 * 105.46448 * 19 18 17 32 32 H 1.09001 * 113.60721 * 270.88236 * 20 19 18 33 33 H 1.08988 * 113.61653 * 139.98270 * 20 19 18 34 34 H 1.08996 * 113.61605 * 254.52889 * 21 18 17 35 35 H 1.09004 * 113.61527 * 25.35241 * 21 18 17 36 36 H 1.08993 * 109.74916 * 103.94389 * 22 14 13 37 37 H 1.09004 * 109.74650 * 224.66800 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8889 11 6 2.2457 -3.6633 -0.0005 12 6 1.5003 -4.9797 0.2475 13 7 0.3736 -5.0639 -0.6846 14 6 -0.1448 -3.9947 -1.3702 15 6 -1.1530 -4.4586 -2.1187 16 7 -1.2575 -5.7798 -1.8939 17 6 -0.3396 -6.1471 -1.0378 18 6 -0.1222 -7.5484 -0.5277 19 6 -0.3336 -8.6329 -1.5973 20 6 -1.0214 -9.4667 -0.5033 21 6 -1.3441 -8.1364 0.1975 22 6 0.3711 -2.5834 -1.2553 23 1 -0.4850 0.8400 0.0004 24 1 2.9832 -3.5102 0.7873 25 1 2.7501 -3.7085 -0.9657 26 1 1.1297 -5.0025 1.2722 27 1 2.1742 -5.8207 0.0835 28 1 -1.7748 -3.8746 -2.7811 29 1 0.8093 -7.6568 0.0278 30 1 -1.0043 -8.3288 -2.4009 31 1 0.5945 -9.0725 -1.9627 32 1 -0.3354 -10.1009 0.0583 33 1 -1.9044 -10.0017 -0.8525 34 1 -1.2318 -8.1752 1.2810 35 1 -2.2910 -7.6955 -0.1144 36 1 0.9618 -2.3343 -2.1368 37 1 -0.4663 -1.8914 -1.1648 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:00 Heat of formation + Delta-G solvation = 61.014923 kcal Electronic energy + Delta-G solvation = -17922.566514 eV Core-core repulsion = 15279.532451 eV Total energy + Delta-G solvation = -2643.034063 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71681 -38.35054 -36.02191 -33.22518 -31.33333 -29.77214 -27.83310 -25.85040 -25.52133 -24.12134 -23.00116 -20.74093 -20.55526 -18.70687 -18.07935 -16.66885 -16.38941 -15.22731 -15.15238 -14.55761 -14.40347 -13.38598 -13.11400 -13.01797 -12.82418 -12.41950 -12.30532 -12.28057 -12.10695 -11.54298 -11.11833 -10.98503 -10.73319 -10.64043 -10.50117 -10.40991 -10.29308 -9.91246 -9.46021 -9.34923 -8.91298 -8.81946 -8.49310 -7.39732 -6.10538 -4.17670 2.74178 3.25049 3.32554 3.34488 3.44673 3.73326 4.34874 4.62691 4.75323 4.77115 5.02723 5.08170 5.19348 5.24583 5.41885 5.49908 5.66232 5.70115 5.76293 5.90348 5.93333 6.05751 6.14562 6.19159 6.24570 6.39315 6.47135 6.58979 6.69286 6.87736 6.90120 7.33093 7.45252 7.60086 7.73664 7.89258 7.96844 8.26072 8.74489 8.85413 9.48374 10.96522 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.051415 B = 0.005287 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.461181 B = 5294.550604 C = 5565.443677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.124 4.124 12 C 0.104 3.896 13 N -0.449 5.449 14 C 0.015 3.985 15 C -0.058 4.058 16 N -0.493 5.493 17 C 0.189 3.811 18 C -0.027 4.027 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.041 4.041 23 H 0.263 0.737 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.162 0.838 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 -13.426 0.009 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.029 3.971 10 H 0.047 0.953 11 C -0.162 4.162 12 C -0.018 4.018 13 N -0.132 5.132 14 C -0.101 4.101 15 C -0.203 4.203 16 N -0.213 5.213 17 C -0.072 4.072 18 C -0.047 4.047 19 C -0.158 4.158 20 C -0.180 4.180 21 C -0.162 4.162 22 C -0.080 4.080 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.179 0.821 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.109 -13.817 -0.244 13.820 hybrid contribution 1.058 1.595 0.398 1.955 sum 1.167 -12.222 0.154 12.278 Atomic orbital electron populations 1.69884 1.05913 1.26812 1.49937 1.24981 0.94866 0.99208 0.94722 0.86572 0.79808 0.83312 0.78192 1.20572 1.21176 1.19933 1.21087 0.92895 0.90162 1.51654 0.92418 1.18749 0.92409 0.91838 0.94127 0.95280 1.22012 0.99322 0.93101 1.01732 1.22025 0.86810 1.00711 0.92263 1.45270 1.26252 1.07739 1.33942 1.22141 0.98290 0.92179 0.97444 1.21684 1.01600 0.91164 1.05898 1.70159 1.21684 1.13076 1.16365 1.22578 0.94093 0.90046 1.00484 1.20825 0.99288 0.86391 0.98165 1.22899 1.00954 0.94990 0.97006 1.22812 1.00727 0.96317 0.98119 1.22926 0.98411 0.95820 0.99019 1.20557 1.01556 0.86156 0.99733 0.92732 0.90829 0.92328 0.90711 0.90840 0.82076 0.88687 0.88643 0.91782 0.90414 0.91259 0.91670 0.89201 0.92060 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 11.50 55.43 0.64 -23.86 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.54 8.52 -34.44 -0.29 -13.84 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.13 2.12 -91.45 -0.19 0.93 16 10 H 0.03 0.77 8.12 -51.93 -0.42 0.34 16 11 C -0.12 -2.39 5.16 -26.52 -0.14 -2.52 16 12 C 0.10 1.75 6.58 -3.91 -0.03 1.73 16 13 N -0.45 -8.67 3.13 -109.43 -0.34 -9.02 16 14 C 0.01 0.32 6.57 -81.73 -0.54 -0.22 16 15 C -0.06 -1.20 11.84 -17.95 -0.21 -1.41 16 16 N -0.49 -9.91 10.85 -11.02 -0.12 -10.03 16 17 C 0.19 3.45 7.01 -155.75 -1.09 2.36 16 18 C -0.03 -0.37 4.08 -90.96 -0.37 -0.74 16 19 C -0.12 -1.46 7.62 -25.92 -0.20 -1.66 16 20 C -0.14 -1.44 8.08 -25.92 -0.21 -1.65 16 21 C -0.12 -1.52 7.63 -25.92 -0.20 -1.72 16 22 C -0.04 -0.97 5.19 -27.62 -0.14 -1.11 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 25 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.07 1.01 7.80 -51.93 -0.41 0.61 16 28 H 0.16 3.04 8.06 -52.49 -0.42 2.62 16 29 H 0.09 1.15 7.53 -51.93 -0.39 0.76 16 30 H 0.10 1.32 7.76 -51.93 -0.40 0.92 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.65 8.14 -51.94 -0.42 0.23 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 36 H 0.06 1.44 8.11 -51.93 -0.42 1.02 16 37 H 0.11 2.74 6.52 -51.93 -0.34 2.40 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -28.71 297.01 -9.79 -38.51 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.72 Total: 2.65 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -3.70 Total: -18.23 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.18 Total: -42.90 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.71 -9.79 -38.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.522 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds