Wall clock time and date at job start Mon Mar 30 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99741 * 2 1 4 4 H 1.48497 * 109.47087 * 269.99938 * 3 2 1 5 5 H 1.48503 * 109.47364 * 30.00290 * 3 2 1 6 6 H 1.48502 * 109.47079 * 150.00110 * 3 2 1 7 7 C 1.37872 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00127 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50123 * 300.07075 * 9 7 2 11 11 C 1.53119 * 109.49767 * 180.02562 * 9 7 2 12 12 C 1.53291 * 109.70222 * 170.10553 * 11 9 7 13 13 N 1.46471 * 108.69161 * 50.77280 * 12 11 9 14 14 C 1.37182 * 124.32356 * 342.75488 * 13 12 11 15 15 C 1.33869 * 107.09315 * 179.84354 * 14 13 12 16 16 N 1.34420 * 107.79689 * 0.32252 * 15 14 13 17 17 C 1.30790 * 109.32582 * 359.54764 * 16 15 14 18 18 C 1.50696 * 125.72787 * 180.12191 * 17 16 15 19 19 C 1.53785 * 113.61413 * 37.82100 * 18 17 16 20 20 C 1.53782 * 87.08065 * 220.01992 * 19 18 17 21 21 C 1.53777 * 113.61574 * 300.32071 * 18 17 16 22 22 C 1.50703 * 124.22795 * 359.77676 * 14 13 12 23 23 H 0.96995 * 120.00200 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.43023 * 50.03680 * 11 9 7 25 25 H 1.08996 * 109.39537 * 290.15101 * 11 9 7 26 26 H 1.08995 * 109.59842 * 291.01079 * 12 11 9 27 27 H 1.09004 * 109.72974 * 170.61443 * 12 11 9 28 28 H 1.08002 * 126.09746 * 180.02562 * 15 14 13 29 29 H 1.09000 * 112.84667 * 169.12192 * 18 17 16 30 30 H 1.08999 * 113.60924 * 334.56395 * 19 18 17 31 31 H 1.09002 * 113.61388 * 105.46448 * 19 18 17 32 32 H 1.09001 * 113.60721 * 270.88236 * 20 19 18 33 33 H 1.08988 * 113.61653 * 139.98270 * 20 19 18 34 34 H 1.08996 * 113.61605 * 254.52889 * 21 18 17 35 35 H 1.09004 * 113.61527 * 25.35241 * 21 18 17 36 36 H 1.08993 * 109.74916 * 103.94389 * 22 14 13 37 37 H 1.09004 * 109.74650 * 224.66800 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6237 -2.5570 0.8889 11 6 2.2457 -3.6633 -0.0005 12 6 1.5003 -4.9797 0.2475 13 7 0.3736 -5.0639 -0.6846 14 6 -0.1448 -3.9947 -1.3702 15 6 -1.1530 -4.4586 -2.1187 16 7 -1.2575 -5.7798 -1.8939 17 6 -0.3396 -6.1471 -1.0378 18 6 -0.1222 -7.5484 -0.5277 19 6 -0.3336 -8.6329 -1.5973 20 6 -1.0214 -9.4667 -0.5033 21 6 -1.3441 -8.1364 0.1975 22 6 0.3711 -2.5834 -1.2553 23 1 -0.4850 0.8400 0.0004 24 1 2.9832 -3.5102 0.7873 25 1 2.7501 -3.7085 -0.9657 26 1 1.1297 -5.0025 1.2722 27 1 2.1742 -5.8207 0.0835 28 1 -1.7748 -3.8746 -2.7811 29 1 0.8093 -7.6568 0.0278 30 1 -1.0043 -8.3288 -2.4009 31 1 0.5945 -9.0725 -1.9627 32 1 -0.3354 -10.1009 0.0583 33 1 -1.9044 -10.0017 -0.8525 34 1 -1.2318 -8.1752 1.2810 35 1 -2.2910 -7.6955 -0.1144 36 1 0.9618 -2.3343 -2.1368 37 1 -0.4663 -1.8914 -1.1648 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:59 Heat of formation + Delta-G solvation = 46.744910 kcal Electronic energy + Delta-G solvation = -17923.185309 eV Core-core repulsion = 15279.532451 eV Total energy + Delta-G solvation = -2643.652857 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.22806 -39.36478 -37.68881 -34.99594 -33.13371 -31.35353 -29.34462 -27.45489 -26.45989 -25.67177 -24.59364 -22.36051 -21.92022 -19.84880 -19.67848 -18.39078 -17.99594 -16.77554 -16.45856 -16.07522 -15.63344 -14.98827 -14.80716 -14.60979 -14.57150 -13.96285 -13.41023 -13.31543 -13.27582 -13.22793 -12.85227 -12.64820 -12.45332 -12.34139 -11.73127 -11.65551 -11.39725 -11.25490 -11.18503 -11.04944 -10.73739 -10.50014 -10.31346 -9.00536 -8.13255 -6.27674 1.21258 1.42234 1.43623 1.52931 2.00344 2.17709 2.41841 3.15501 3.46897 3.75008 3.82062 3.85570 3.93576 3.99473 4.08389 4.21309 4.29270 4.50412 4.65908 4.72402 4.75011 4.84618 4.91666 4.96181 4.96828 5.07164 5.10386 5.15942 5.21145 5.32840 5.53346 5.62000 5.68667 5.74021 5.89921 5.99320 6.25740 6.48334 6.83278 7.21003 7.41996 8.92645 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.051415 B = 0.005287 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.461181 B = 5294.550604 C = 5565.443677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.045 3.955 10 H -0.005 1.005 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.453 5.453 14 C -0.016 4.016 15 C -0.065 4.065 16 N -0.517 5.517 17 C 0.204 3.796 18 C -0.037 4.037 19 C -0.120 4.120 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.026 4.026 23 H 0.262 0.738 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.168 0.832 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -15.620 0.760 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.026 3.974 10 H 0.013 0.987 11 C -0.153 4.153 12 C -0.017 4.017 13 N -0.136 5.136 14 C -0.131 4.131 15 C -0.211 4.211 16 N -0.236 5.236 17 C -0.058 4.058 18 C -0.057 4.057 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.065 4.065 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.135 0.865 28 H 0.185 0.815 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.705 -16.014 0.511 16.113 hybrid contribution 0.532 2.232 0.170 2.301 sum 2.237 -13.782 0.681 13.979 Atomic orbital electron populations 1.70035 1.07342 1.27388 1.50914 1.25766 0.95582 1.02555 0.94513 0.85587 0.78780 0.79275 0.78207 1.20225 1.21224 1.18945 1.21486 0.93256 0.91419 1.51140 0.92085 1.18686 0.92875 0.93250 0.92584 0.98690 1.21854 0.98558 0.92676 1.02257 1.22202 0.86524 1.00686 0.92257 1.45459 1.26895 1.07254 1.33999 1.21836 0.99734 0.92003 0.99555 1.21922 1.01443 0.91918 1.05807 1.70200 1.23072 1.12442 1.17913 1.23571 0.92278 0.91422 0.98516 1.21292 1.01185 0.83711 0.99471 1.22867 1.01606 0.94817 0.96586 1.22776 1.01249 0.95345 0.96654 1.22904 0.96524 0.96970 1.00024 1.20150 1.00108 0.87114 0.99101 0.92924 0.89317 0.92467 0.89674 0.86529 0.81512 0.85977 0.90997 0.89962 0.87699 0.90524 0.90109 0.91684 0.93301 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.44 11.50 21.45 0.25 -52.19 16 2 C 0.02 0.81 5.31 84.65 0.45 1.26 16 3 Si 0.96 42.47 29.54 68.60 2.03 44.49 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -28.26 8.52 25.60 0.22 -28.04 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.04 2.18 2.12 -11.33 -0.02 2.15 16 10 H -0.01 -0.28 8.12 -2.38 -0.02 -0.30 16 11 C -0.12 -4.32 5.16 30.73 0.16 -4.16 16 12 C 0.10 3.24 6.58 86.48 0.57 3.81 16 13 N -0.45 -17.04 3.13 -500.12 -1.57 -18.61 16 14 C -0.02 -0.70 6.57 40.73 0.27 -0.43 16 15 C -0.07 -2.78 11.84 83.30 0.99 -1.79 16 16 N -0.52 -20.75 10.85 -188.77 -2.05 -22.79 16 17 C 0.20 7.17 7.01 138.24 0.97 8.14 16 18 C -0.04 -0.90 4.08 -11.02 -0.04 -0.94 16 19 C -0.12 -2.56 7.62 31.12 0.24 -2.33 16 20 C -0.12 -2.02 8.08 31.12 0.25 -1.77 16 21 C -0.13 -2.75 7.63 31.12 0.24 -2.51 16 22 C -0.03 -1.26 5.19 30.02 0.16 -1.10 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H 0.09 3.02 8.11 -2.39 -0.02 3.00 16 25 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.12 2.67 7.80 -2.38 -0.02 2.65 16 28 H 0.17 6.61 8.06 -2.91 -0.02 6.59 16 29 H 0.12 2.35 7.53 -2.39 -0.02 2.33 16 30 H 0.07 1.89 7.76 -2.39 -0.02 1.87 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.75 8.09 -2.38 -0.02 1.74 16 36 H 0.05 2.42 8.11 -2.39 -0.02 2.40 16 37 H 0.07 4.04 6.52 -2.39 -0.02 4.03 16 Total: -1.00 -64.01 297.01 4.13 -59.88 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.04 Total: 16.93 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 4.43 Total: -27.71 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.37 Total: -93.59 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -64.01 4.13 -59.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.623 kcal (2) G-P(sol) polarization free energy of solvation -64.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds