Wall clock time and date at job start Mon Mar 30 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47046 * 2 1 4 4 C 1.50699 * 109.47496 * 120.00505 * 2 1 3 5 5 H 1.07996 * 120.00305 * 120.00093 * 4 2 1 6 6 C 1.37878 * 119.99549 * 300.27731 * 4 2 1 7 7 N 1.31513 * 120.00207 * 359.72146 * 6 4 2 8 8 Si 1.86802 * 119.99726 * 179.72335 * 6 4 2 9 9 H 1.48506 * 109.46971 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47253 * 119.99743 * 8 6 4 11 11 H 1.48496 * 109.47422 * 239.99995 * 8 6 4 12 12 C 1.50703 * 109.47058 * 240.00714 * 2 1 3 13 13 C 1.38168 * 120.02554 * 299.99641 * 12 2 1 14 14 C 1.38248 * 120.05390 * 179.97438 * 13 12 2 15 15 C 1.38278 * 120.11129 * 0.02562 * 14 13 12 16 16 C 1.38122 * 120.05880 * 0.02562 * 15 14 13 17 17 C 1.38705 * 120.02968 * 119.72181 * 12 2 1 18 18 O 1.35897 * 120.05822 * 359.97438 * 17 12 2 19 19 C 1.42902 * 117.00534 * 185.80283 * 18 17 12 20 20 C 1.53779 * 113.61366 * 255.34346 * 19 18 17 21 21 C 1.53781 * 87.07996 * 220.01757 * 20 19 18 22 22 C 1.53777 * 87.08392 * 25.43163 * 21 20 19 23 23 H 1.08999 * 109.47424 * 59.99704 * 1 2 3 24 24 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47159 * 299.99445 * 1 2 3 26 26 H 0.97002 * 119.99949 * 180.02562 * 7 6 4 27 27 H 1.08003 * 119.97262 * 359.97438 * 13 12 2 28 28 H 1.08000 * 119.94160 * 180.02562 * 14 13 12 29 29 H 1.08007 * 119.97352 * 180.02562 * 15 14 13 30 30 H 1.08000 * 120.02728 * 179.97438 * 16 15 14 31 31 H 1.09003 * 112.84866 * 26.64700 * 19 18 17 32 32 H 1.08998 * 113.61694 * 334.56398 * 20 19 18 33 33 H 1.08998 * 113.61584 * 105.46651 * 20 19 18 34 34 H 1.09006 * 113.61341 * 270.88734 * 21 20 19 35 35 H 1.09000 * 113.61721 * 139.98224 * 21 20 19 36 36 H 1.08995 * 113.61601 * 220.02457 * 22 21 20 37 37 H 1.08999 * 113.69154 * 89.12435 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9385 0.8264 2.6034 8 14 2.3110 -1.1280 4.0078 9 1 3.1366 -2.2943 3.6034 10 1 3.1332 -0.1973 4.8219 11 1 1.1527 -1.5966 4.8103 12 6 2.0323 -0.7103 -1.2306 13 6 1.6989 -2.0331 -1.4499 14 6 2.1589 -2.6851 -2.5788 15 6 2.9540 -2.0157 -3.4909 16 6 3.2910 -0.6936 -3.2757 17 6 2.8250 -0.0350 -2.1468 18 8 3.1493 1.2678 -1.9365 19 6 3.8602 1.9363 -2.9805 20 6 5.3541 2.1385 -2.6769 21 6 5.2140 3.5318 -3.3125 22 6 3.7244 3.4674 -2.9359 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 0.7012 1.1556 3.4844 27 1 1.0783 -2.5581 -0.7387 28 1 1.8969 -3.7189 -2.7486 29 1 3.3119 -2.5271 -4.3723 30 1 3.9124 -0.1714 -3.9882 31 1 3.6672 1.5093 -3.9647 32 1 5.5835 2.1656 -1.6117 33 1 6.0077 1.4678 -3.2347 34 1 5.3925 3.5411 -4.3878 35 1 5.7647 4.3101 -2.7842 36 1 3.0624 3.8695 -3.7028 37 1 3.5068 3.8577 -1.9417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:38 Heat of formation + Delta-G solvation = -1.071790 kcal Electronic energy + Delta-G solvation = -17875.363876 eV Core-core repulsion = 15197.344780 eV Total energy + Delta-G solvation = -2678.019096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.96158 -38.17782 -35.70950 -34.28484 -31.36799 -29.33430 -28.04115 -25.60071 -25.15891 -25.03678 -22.62129 -21.45874 -19.89813 -19.13675 -17.73862 -16.19450 -15.80060 -15.36790 -14.86312 -14.45394 -14.31213 -13.80440 -13.62671 -12.81053 -12.53164 -12.35218 -12.10724 -11.80781 -11.44261 -11.36532 -11.13581 -11.02970 -10.86269 -10.69807 -10.66170 -10.31354 -10.18378 -10.03092 -9.93682 -9.25395 -8.89144 -8.28062 -8.03734 -7.32377 -5.92547 -3.98268 2.05931 2.16463 3.33022 3.40870 3.45626 3.80254 4.42290 4.53797 4.65052 4.67046 4.89054 4.91804 5.29697 5.38253 5.40761 5.54583 5.67198 5.74273 5.84249 5.88069 6.00470 6.03531 6.13496 6.23791 6.37166 6.48755 6.72151 6.89571 6.95566 7.04335 7.25429 7.28238 7.34068 7.60745 7.80951 8.06345 8.16544 8.23554 8.49691 9.04690 9.65080 11.13145 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018639 B = 0.007681 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.901466 B = 3644.573270 C = 4477.829897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.076 3.924 3 H 0.045 0.955 4 C -0.502 4.502 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.060 4.060 13 C -0.079 4.079 14 C -0.163 4.163 15 C -0.112 4.112 16 C -0.215 4.215 17 C 0.115 3.885 18 O -0.287 6.287 19 C 0.053 3.947 20 C -0.157 4.157 21 C -0.141 4.141 22 C -0.132 4.132 23 H 0.006 0.994 24 H 0.026 0.974 25 H 0.085 0.915 26 H 0.259 0.741 27 H 0.127 0.873 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 1.278 -12.240 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.540 4.540 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.061 4.061 13 C -0.098 4.098 14 C -0.181 4.181 15 C -0.130 4.130 16 C -0.234 4.234 17 C 0.070 3.930 18 O -0.201 6.201 19 C -0.004 4.004 20 C -0.194 4.194 21 C -0.178 4.178 22 C -0.169 4.169 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.141 1.518 -11.931 13.080 hybrid contribution 0.479 -0.599 0.619 0.985 sum 5.620 0.919 -11.312 12.665 Atomic orbital electron populations 1.21786 0.97874 0.99012 1.00148 1.17760 0.92472 0.96136 0.87905 0.93709 1.21179 1.30713 1.12163 0.89977 0.92591 1.24945 0.95185 0.95045 0.98810 1.69906 1.36901 1.23008 1.23071 0.86569 0.78615 0.79780 0.83267 1.19803 1.21098 1.21063 1.20140 0.95462 0.93922 0.96529 1.20943 0.98831 0.93722 0.96256 1.20969 1.01448 0.99609 0.96114 1.20634 0.99295 0.93996 0.99108 1.21045 1.06583 0.96519 0.99247 1.18966 0.95901 0.83752 0.94338 1.86298 1.71090 1.21545 1.41140 1.24039 0.91929 0.92944 0.91481 1.23502 0.96473 0.96874 1.02572 1.22645 0.96774 0.97754 1.00631 1.23163 0.96498 0.94000 1.03243 0.97448 0.95488 0.89661 0.93148 0.85513 0.87060 0.87167 0.86642 0.88936 0.88761 0.91372 0.90170 0.90671 0.90948 0.88603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.78 37.16 0.33 -2.95 16 2 C 0.08 1.98 2.44 -92.93 -0.23 1.75 16 3 H 0.04 1.29 6.99 -51.93 -0.36 0.93 16 4 C -0.50 -14.11 8.25 -34.44 -0.28 -14.39 16 5 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.82 11.31 55.43 0.63 -25.20 16 8 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C -0.06 -1.37 4.75 -104.47 -0.50 -1.87 16 13 C -0.08 -1.64 8.71 -39.60 -0.34 -1.98 16 14 C -0.16 -2.85 10.04 -39.56 -0.40 -3.24 16 15 C -0.11 -1.84 10.04 -39.61 -0.40 -2.24 16 16 C -0.22 -3.76 9.01 -39.43 -0.36 -4.12 16 17 C 0.12 2.40 6.65 -39.22 -0.26 2.14 16 18 O -0.29 -5.85 8.91 -19.42 -0.17 -6.02 16 19 C 0.05 0.80 3.63 -25.92 -0.09 0.70 16 20 C -0.16 -2.05 7.91 -25.92 -0.21 -2.26 16 21 C -0.14 -1.50 8.08 -25.92 -0.21 -1.71 16 22 C -0.13 -1.69 7.91 -25.92 -0.21 -1.90 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.03 0.63 7.39 -51.93 -0.38 0.25 16 25 H 0.08 2.32 6.06 -51.93 -0.31 2.01 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.13 2.60 7.58 -52.48 -0.40 2.20 16 28 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 30 H 0.12 1.69 5.96 -52.49 -0.31 1.38 16 31 H 0.09 1.24 6.05 -51.93 -0.31 0.93 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -30.03 301.63 -8.69 -38.72 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.42 Total: 1.75 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -3.25 Total: -30.44 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.63 Total: -25.20 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.17 Total: -6.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.03 -8.69 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.652 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds