Wall clock time and date at job start Mon Mar 30 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47046 * 2 1 4 4 C 1.50699 * 109.47496 * 120.00505 * 2 1 3 5 5 H 1.07996 * 120.00305 * 120.00093 * 4 2 1 6 6 C 1.37878 * 119.99549 * 300.27731 * 4 2 1 7 7 N 1.31513 * 120.00207 * 359.72146 * 6 4 2 8 8 Si 1.86802 * 119.99726 * 179.72335 * 6 4 2 9 9 H 1.48506 * 109.46971 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47253 * 119.99743 * 8 6 4 11 11 H 1.48496 * 109.47422 * 239.99995 * 8 6 4 12 12 C 1.50703 * 109.47058 * 240.00714 * 2 1 3 13 13 C 1.38168 * 120.02554 * 299.99641 * 12 2 1 14 14 C 1.38248 * 120.05390 * 179.97438 * 13 12 2 15 15 C 1.38278 * 120.11129 * 0.02562 * 14 13 12 16 16 C 1.38122 * 120.05880 * 0.02562 * 15 14 13 17 17 C 1.38705 * 120.02968 * 119.72181 * 12 2 1 18 18 O 1.35897 * 120.05822 * 359.97438 * 17 12 2 19 19 C 1.42902 * 117.00534 * 185.80283 * 18 17 12 20 20 C 1.53779 * 113.61366 * 255.34346 * 19 18 17 21 21 C 1.53781 * 87.07996 * 220.01757 * 20 19 18 22 22 C 1.53777 * 87.08392 * 25.43163 * 21 20 19 23 23 H 1.08999 * 109.47424 * 59.99704 * 1 2 3 24 24 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47159 * 299.99445 * 1 2 3 26 26 H 0.97002 * 119.99949 * 180.02562 * 7 6 4 27 27 H 1.08003 * 119.97262 * 359.97438 * 13 12 2 28 28 H 1.08000 * 119.94160 * 180.02562 * 14 13 12 29 29 H 1.08007 * 119.97352 * 180.02562 * 15 14 13 30 30 H 1.08000 * 120.02728 * 179.97438 * 16 15 14 31 31 H 1.09003 * 112.84866 * 26.64700 * 19 18 17 32 32 H 1.08998 * 113.61694 * 334.56398 * 20 19 18 33 33 H 1.08998 * 113.61584 * 105.46651 * 20 19 18 34 34 H 1.09006 * 113.61341 * 270.88734 * 21 20 19 35 35 H 1.09000 * 113.61721 * 139.98224 * 21 20 19 36 36 H 1.08995 * 113.61601 * 220.02457 * 22 21 20 37 37 H 1.08999 * 113.69154 * 89.12435 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9385 0.8264 2.6034 8 14 2.3110 -1.1280 4.0078 9 1 3.1366 -2.2943 3.6034 10 1 3.1332 -0.1973 4.8219 11 1 1.1527 -1.5966 4.8103 12 6 2.0323 -0.7103 -1.2306 13 6 1.6989 -2.0331 -1.4499 14 6 2.1589 -2.6851 -2.5788 15 6 2.9540 -2.0157 -3.4909 16 6 3.2910 -0.6936 -3.2757 17 6 2.8250 -0.0350 -2.1468 18 8 3.1493 1.2678 -1.9365 19 6 3.8602 1.9363 -2.9805 20 6 5.3541 2.1385 -2.6769 21 6 5.2140 3.5318 -3.3125 22 6 3.7244 3.4674 -2.9359 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 0.7012 1.1556 3.4844 27 1 1.0783 -2.5581 -0.7387 28 1 1.8969 -3.7189 -2.7486 29 1 3.3119 -2.5271 -4.3723 30 1 3.9124 -0.1714 -3.9882 31 1 3.6672 1.5093 -3.9647 32 1 5.5835 2.1656 -1.6117 33 1 6.0077 1.4678 -3.2347 34 1 5.3925 3.5411 -4.3878 35 1 5.7647 4.3101 -2.7842 36 1 3.0624 3.8695 -3.7028 37 1 3.5068 3.8577 -1.9417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096115.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:38 Heat of formation + Delta-G solvation = -16.727270 kcal Electronic energy + Delta-G solvation = -17876.042749 eV Core-core repulsion = 15197.344780 eV Total energy + Delta-G solvation = -2678.697968 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30594 -39.46168 -37.02697 -36.21073 -33.32527 -30.78276 -29.74582 -27.21076 -26.63507 -26.27506 -24.27754 -22.84068 -21.52694 -20.36346 -19.10384 -18.28476 -17.20220 -16.71418 -16.42712 -16.01933 -15.69906 -15.20586 -14.97102 -14.66425 -14.23307 -13.62840 -13.43975 -13.35265 -13.12880 -12.90036 -12.69167 -12.62203 -12.45758 -12.31045 -12.15604 -12.05731 -11.82892 -11.38143 -11.14401 -10.99030 -10.96916 -10.44996 -9.53873 -8.83130 -8.07774 -6.22061 0.60178 0.71114 1.38540 1.39563 1.51903 2.42582 2.52446 3.03265 3.19187 3.60525 3.63675 3.84098 3.88584 4.08634 4.15455 4.32605 4.44342 4.63974 4.71769 4.77080 4.79763 4.87595 4.93661 4.97458 5.00512 5.03262 5.14659 5.23849 5.37497 5.41558 5.51834 5.57490 5.64193 5.76374 6.06250 6.09738 6.13839 6.38970 6.78202 6.88022 7.44864 8.96780 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018639 B = 0.007681 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.901466 B = 3644.573270 C = 4477.829897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.080 3.920 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.048 0.952 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.275 1.275 12 C -0.104 4.104 13 C -0.094 4.094 14 C -0.160 4.160 15 C -0.098 4.098 16 C -0.210 4.210 17 C 0.098 3.902 18 O -0.324 6.324 19 C 0.034 3.966 20 C -0.159 4.159 21 C -0.119 4.119 22 C -0.137 4.137 23 H 0.017 0.983 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.261 0.739 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.743 0.053 -14.602 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.201 1.201 12 C -0.104 4.104 13 C -0.112 4.112 14 C -0.178 4.178 15 C -0.115 4.115 16 C -0.228 4.228 17 C 0.053 3.947 18 O -0.239 6.239 19 C -0.021 4.021 20 C -0.197 4.197 21 C -0.156 4.156 22 C -0.175 4.175 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.133 0.867 28 H 0.163 0.837 29 H 0.174 0.826 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.626 0.295 -14.302 15.765 hybrid contribution 0.040 -0.194 1.262 1.277 sum 6.666 0.101 -13.040 14.645 Atomic orbital electron populations 1.21610 0.97720 0.99050 0.99234 1.17499 0.92663 0.94068 0.89601 0.97972 1.21436 1.30724 1.12086 0.91325 0.93349 1.25754 0.95348 0.95781 1.01816 1.70042 1.37782 1.24218 1.23793 0.85549 0.78290 0.78670 0.79441 1.19280 1.20715 1.20094 1.19953 0.98628 0.95294 0.96572 1.20956 0.99504 0.93041 0.97698 1.21311 1.00685 1.01053 0.94741 1.21183 0.97218 0.93397 0.99734 1.21399 1.06013 0.97135 0.98265 1.19163 0.96106 0.84255 0.95182 1.86268 1.71966 1.21841 1.43795 1.24570 0.92687 0.93608 0.91281 1.23479 0.95473 0.99173 1.01544 1.22636 0.94472 0.96177 1.02281 1.23208 0.98991 0.92714 1.02574 0.96415 0.94790 0.92286 0.93011 0.86682 0.83693 0.82573 0.83468 0.86831 0.91417 0.89507 0.87139 0.89736 0.89178 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.25 8.78 71.98 0.63 -5.62 16 2 C 0.08 4.44 2.44 -12.29 -0.03 4.41 16 3 H 0.00 0.13 6.99 -2.39 -0.02 0.12 16 4 C -0.52 -30.36 8.25 25.60 0.21 -30.15 16 5 H 0.05 2.83 7.60 -2.91 -0.02 2.81 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -55.50 11.31 21.45 0.24 -55.26 16 8 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 C -0.10 -4.91 4.75 -19.77 -0.09 -5.00 16 13 C -0.09 -3.87 8.71 22.26 0.19 -3.68 16 14 C -0.16 -5.13 10.04 22.28 0.22 -4.91 16 15 C -0.10 -2.79 10.04 22.25 0.22 -2.57 16 16 C -0.21 -6.75 9.01 22.37 0.20 -6.55 16 17 C 0.10 4.09 6.65 22.51 0.15 4.24 16 18 O -0.32 -13.69 8.91 -92.39 -0.82 -14.51 16 19 C 0.03 1.00 3.63 31.12 0.11 1.12 16 20 C -0.16 -3.99 7.91 31.12 0.25 -3.74 16 21 C -0.12 -2.24 8.08 31.12 0.25 -1.99 16 22 C -0.14 -3.46 7.91 31.12 0.25 -3.21 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 24 H 0.03 1.67 7.39 -2.39 -0.02 1.65 16 25 H 0.06 3.39 6.06 -2.38 -0.01 3.38 16 26 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.12 4.85 7.58 -2.91 -0.02 4.82 16 28 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 29 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 30 H 0.15 3.70 5.96 -2.91 -0.02 3.69 16 31 H 0.11 2.75 6.05 -2.39 -0.01 2.74 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -68.99 301.63 5.50 -63.49 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.04 Total: 15.36 kcal Atomic # 6 Polarization: -59.57 SS G_CDS: 3.02 Total: -56.56 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.24 Total: -55.26 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.82 Total: -14.51 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.99 5.50 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096115.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.760 kcal (2) G-P(sol) polarization free energy of solvation -68.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds