Wall clock time and date at job start Mon Mar 30 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 H 1.08998 * 109.47373 * 305.00273 * 3 2 1 5 5 C 1.50692 * 109.47022 * 184.99467 * 3 2 1 6 6 H 1.07995 * 120.00481 * 240.00166 * 5 3 2 7 7 C 1.37879 * 119.99736 * 60.00412 * 5 3 2 8 8 N 1.31516 * 120.00212 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00082 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47366 * 90.00214 * 9 7 5 11 11 H 1.48503 * 109.47248 * 210.00170 * 9 7 5 12 12 H 1.48502 * 109.47204 * 330.00077 * 9 7 5 13 13 C 1.50703 * 109.46706 * 64.99909 * 3 2 1 14 14 C 1.38265 * 120.05080 * 60.00214 * 13 3 2 15 15 C 1.38071 * 119.86022 * 180.08565 * 14 13 3 16 16 C 1.38590 * 120.27320 * 0.24967 * 15 14 13 17 17 C 1.37904 * 119.89015 * 359.25596 * 16 15 14 18 18 C 1.38054 * 120.05261 * 239.97565 * 13 3 2 19 19 C 1.50655 * 121.50473 * 180.90281 * 17 16 15 20 20 O 1.43033 * 110.16074 * 343.31779 * 19 17 16 21 21 C 1.43208 * 112.83711 * 52.28519 * 20 19 17 22 22 C 1.50744 * 118.76283 * 179.28845 * 16 15 14 23 23 H 1.08997 * 109.46900 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47285 * 299.99645 * 1 2 3 25 25 H 1.09006 * 109.46794 * 59.99908 * 1 2 3 26 26 H 1.08999 * 109.46840 * 240.00058 * 2 1 3 27 27 H 1.08996 * 109.46805 * 120.00167 * 2 1 3 28 28 H 0.96994 * 120.00322 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.06788 * 0.10946 * 14 13 3 30 30 H 1.08002 * 119.85916 * 179.97438 * 15 14 13 31 31 H 1.08000 * 119.84923 * 0.06668 * 18 13 3 32 32 H 1.09004 * 109.33752 * 104.28038 * 19 17 16 33 33 H 1.09003 * 109.33370 * 223.77962 * 19 17 16 34 34 H 1.08994 * 109.63672 * 169.34852 * 21 20 19 35 35 H 1.08999 * 109.80749 * 48.83504 * 21 20 19 36 36 H 1.09000 * 109.42816 * 282.99869 * 22 16 15 37 37 H 1.09001 * 109.42369 * 42.89169 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8813 -1.3816 10 1 6.5548 -0.3502 -0.7601 11 1 6.3830 0.9225 -2.8171 12 1 6.5569 2.0738 -0.6899 13 6 1.6413 2.1162 1.2877 14 6 2.0762 1.6088 2.4982 15 6 1.7070 2.2281 3.6757 16 6 0.8981 3.3531 3.6496 17 6 0.4724 3.8656 2.4422 18 6 0.8416 3.2412 1.2607 19 6 -0.3910 5.0982 2.3705 20 8 -0.9754 5.3656 3.6484 21 6 -0.0079 5.4123 4.7032 22 6 0.5025 3.9925 4.9561 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0602 -2.9502 29 1 2.7037 0.7301 2.5225 30 1 2.0464 1.8315 4.6212 31 1 0.5017 3.6365 0.3148 32 1 0.2162 5.9463 2.0540 33 1 -1.1890 4.9382 1.6455 34 1 -0.4724 5.8013 5.6092 35 1 0.8238 6.0544 4.4133 36 1 -0.2850 3.4024 5.4248 37 1 1.3683 4.0319 5.6172 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261102400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:06 Heat of formation + Delta-G solvation = -59.388713 kcal Electronic energy + Delta-G solvation = -17837.708032 eV Core-core repulsion = 15157.160124 eV Total energy + Delta-G solvation = -2680.547907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14915 -38.91299 -36.56153 -34.04255 -33.33399 -32.25375 -30.56983 -28.69571 -26.31471 -25.44398 -24.11839 -22.98841 -22.00943 -20.18850 -18.36891 -17.59167 -17.22418 -16.70941 -16.47785 -15.99541 -15.61439 -14.99320 -14.89666 -14.68985 -14.32860 -13.99569 -13.65036 -13.50768 -13.16468 -13.04848 -12.80379 -12.65794 -12.61477 -12.27793 -11.96704 -11.76456 -11.75784 -11.51583 -11.15709 -10.92134 -10.55290 -10.43009 -9.53727 -9.12888 -8.09505 -6.23838 0.53450 0.62135 1.39500 1.40777 1.50521 2.41585 2.90747 3.01664 3.17067 3.80711 3.84678 4.00125 4.19532 4.35879 4.37358 4.45187 4.49393 4.56876 4.63011 4.68537 4.74432 4.80911 4.85809 4.98541 5.02933 5.09318 5.20660 5.30245 5.36436 5.49045 5.61345 5.62595 5.72046 5.74910 6.05326 6.13550 6.16458 6.28093 6.40189 6.84871 7.43480 8.93808 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029813 B = 0.006068 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.953216 B = 4613.089505 C = 4900.127834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C 0.080 3.920 4 H 0.002 0.998 5 C -0.523 4.523 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.272 1.272 13 C -0.050 4.050 14 C -0.125 4.125 15 C -0.119 4.119 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.137 4.137 19 C 0.106 3.894 20 O -0.391 6.391 21 C 0.053 3.947 22 C -0.105 4.105 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 7.085 12.418 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.062 3.938 4 H 0.020 0.980 5 C -0.561 4.561 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.197 1.197 13 C -0.050 4.050 14 C -0.143 4.143 15 C -0.137 4.137 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.155 4.155 19 C 0.029 3.971 20 O -0.309 6.309 21 C -0.023 4.023 22 C -0.142 4.142 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.158 0.842 31 H 0.132 0.868 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.126 7.032 12.276 15.417 hybrid contribution 1.477 -0.489 -0.844 1.770 sum -4.649 6.543 11.432 13.968 Atomic orbital electron populations 1.21694 0.96754 1.00507 1.00207 1.21443 0.93877 0.98479 1.00720 1.17747 0.94439 0.92454 0.89150 0.98015 1.21399 0.92115 1.37350 1.05213 0.93405 1.25680 1.02186 0.94982 0.95421 1.70000 1.36362 1.39149 1.09830 0.85655 0.80855 0.78531 0.77224 1.19970 1.20781 1.19708 1.20316 0.93842 0.94578 0.96262 1.21029 1.00359 1.00492 0.92411 1.21247 0.98492 0.95871 0.98095 1.19691 0.98980 0.96921 0.95121 1.20356 1.00416 0.98883 0.93052 1.20976 1.00195 0.96603 0.97697 1.21469 0.96491 0.92969 0.86126 1.88105 1.34199 1.91971 1.16662 1.22833 0.92647 0.95399 0.91413 1.21105 1.02514 0.96997 0.93599 0.92831 0.93761 0.94154 0.91605 0.94977 0.92914 0.87243 0.84165 0.86775 0.90686 0.87367 0.85891 0.92290 0.89539 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 9.73 71.98 0.70 -4.75 16 2 C -0.11 -5.18 5.14 30.60 0.16 -5.02 16 3 C 0.08 4.09 1.95 -12.29 -0.02 4.07 16 4 H 0.00 0.10 7.87 -2.39 -0.02 0.08 16 5 C -0.52 -28.97 8.24 25.60 0.21 -28.75 16 6 H 0.05 2.66 7.60 -2.91 -0.02 2.64 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -52.51 11.29 21.45 0.24 -52.27 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C -0.05 -2.18 3.71 -19.90 -0.07 -2.26 16 14 C -0.12 -4.99 8.66 22.24 0.19 -4.80 16 15 C -0.12 -3.88 9.67 22.31 0.22 -3.67 16 16 C -0.11 -3.26 5.78 -19.85 -0.11 -3.38 16 17 C -0.13 -4.16 5.80 -19.86 -0.12 -4.28 16 18 C -0.14 -5.30 9.30 22.32 0.21 -5.10 16 19 C 0.11 2.81 6.66 71.22 0.47 3.28 16 20 O -0.39 -10.04 10.83 -148.98 -1.61 -11.66 16 21 C 0.05 1.05 6.84 71.98 0.49 1.54 16 22 C -0.11 -2.26 6.01 29.86 0.18 -2.08 16 23 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.04 1.71 7.38 -2.39 -0.02 1.70 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.07 3.57 5.95 -2.39 -0.01 3.56 16 27 H 0.03 1.51 7.23 -2.39 -0.02 1.49 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.11 4.52 7.56 -2.91 -0.02 4.50 16 30 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.11 4.30 7.94 -2.91 -0.02 4.28 16 32 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.11 8.07 -2.39 -0.02 1.09 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -62.26 298.72 4.64 -57.62 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.04 Total: 14.38 kcal Atomic # 6 Polarization: -56.79 SS G_CDS: 2.95 Total: -53.84 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.24 Total: -52.27 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.61 Total: -11.66 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -62.26 4.64 -57.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.766 kcal (2) G-P(sol) polarization free energy of solvation -62.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds