Wall clock time and date at job start Mon Mar 30 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 H 1.09003 * 109.46747 * 305.62823 * 3 2 1 5 5 C 1.50701 * 109.47168 * 65.62372 * 3 2 1 6 6 H 1.07995 * 120.00035 * 28.16764 * 5 3 2 7 7 C 1.37882 * 119.99877 * 208.16461 * 5 3 2 8 8 N 1.31513 * 119.99946 * 6.20381 * 7 5 3 9 9 Si 1.86801 * 119.99976 * 186.20681 * 7 5 3 10 10 H 1.48509 * 109.47104 * 59.99850 * 9 7 5 11 11 H 1.48496 * 109.47089 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47110 * 300.00215 * 9 7 5 13 13 C 1.50700 * 109.47244 * 185.62737 * 3 2 1 14 14 C 1.38257 * 120.04921 * 299.99831 * 13 3 2 15 15 C 1.38069 * 119.86280 * 180.38768 * 14 13 3 16 16 C 1.38599 * 120.27006 * 359.49365 * 15 14 13 17 17 C 1.37904 * 119.89005 * 0.28313 * 16 15 14 18 18 C 1.38057 * 120.05154 * 120.02088 * 13 3 2 19 19 C 1.50656 * 121.49964 * 180.39477 * 17 16 15 20 20 O 1.42717 * 110.27466 * 343.74886 * 19 17 16 21 21 C 1.43206 * 113.17062 * 51.74298 * 20 19 17 22 22 C 1.50746 * 118.76076 * 179.79895 * 16 15 14 23 23 H 1.08999 * 109.47157 * 174.08360 * 1 2 3 24 24 H 1.08996 * 109.47813 * 294.09100 * 1 2 3 25 25 H 1.09004 * 109.47131 * 54.08373 * 1 2 3 26 26 H 1.08999 * 109.47753 * 239.99719 * 2 1 3 27 27 H 1.09005 * 109.46740 * 119.99649 * 2 1 3 28 28 H 0.97003 * 119.99587 * 179.97438 * 8 7 5 29 29 H 1.07998 * 120.07022 * 0.10741 * 14 13 3 30 30 H 1.08005 * 119.86727 * 179.70332 * 15 14 13 31 31 H 1.08005 * 119.84897 * 359.97438 * 18 13 3 32 32 H 1.08997 * 109.33480 * 103.99313 * 19 17 16 33 33 H 1.08997 * 109.33539 * 223.49861 * 19 17 16 34 34 H 1.09002 * 109.63579 * 169.68959 * 21 20 19 35 35 H 1.08999 * 109.80522 * 49.17788 * 21 20 19 36 36 H 1.09001 * 109.42510 * 283.24186 * 22 16 15 37 37 H 1.08998 * 109.42361 * 43.12855 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 1.6546 2.1116 1.2942 6 1 1.5295 1.5222 2.1904 7 6 1.4617 3.4763 1.3339 8 7 1.4936 4.1776 0.2218 9 14 1.1551 4.3290 2.9674 10 1 2.3139 4.1041 3.8685 11 1 0.9809 5.7861 2.7401 12 1 -0.0727 3.7747 3.5924 13 6 3.5405 1.4448 -0.1393 14 6 4.3248 0.8139 0.8086 15 6 5.6996 0.8252 0.6814 16 6 6.2962 1.4574 -0.3981 17 6 5.5142 2.0829 -1.3463 18 6 4.1342 2.0772 -1.2134 19 6 6.1238 2.7733 -2.5385 20 8 7.5167 2.9967 -2.3219 21 6 8.2220 1.8148 -1.9260 22 6 7.8001 1.4530 -0.5008 23 1 -0.3633 -1.0222 -0.1059 24 1 -0.3634 0.4194 0.9381 25 1 -0.3633 0.6029 -0.8323 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.3575 5.1376 0.2498 29 1 3.8632 0.3172 1.6491 30 1 6.3125 0.3365 1.4244 31 1 3.5208 2.5697 -1.9534 32 1 5.9915 2.1503 -3.4230 33 1 5.6251 3.7296 -2.6958 34 1 9.2954 2.0023 -1.9539 35 1 7.9758 0.9946 -2.6003 36 1 8.2132 2.1825 0.1958 37 1 8.1774 0.4609 -0.2529 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261102407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:07 Heat of formation + Delta-G solvation = -47.253528 kcal Electronic energy + Delta-G solvation = -17890.980779 eV Core-core repulsion = 15210.959093 eV Total energy + Delta-G solvation = -2680.021686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68940 -37.40294 -34.83214 -32.35439 -31.83377 -30.84039 -29.13013 -26.56069 -24.89748 -24.02562 -22.64608 -21.37688 -20.26884 -18.77475 -16.61875 -16.13432 -15.88640 -15.13763 -14.72785 -14.47239 -14.10143 -13.52260 -13.39186 -13.09162 -12.69143 -12.61259 -12.24449 -12.01271 -11.39333 -11.31493 -11.27190 -10.96836 -10.88125 -10.56950 -10.46884 -10.40424 -10.17342 -9.80500 -9.42198 -9.28095 -8.93417 -8.46385 -7.92291 -7.46860 -6.06023 -4.07682 2.16215 2.27026 3.30205 3.35473 3.38013 4.09026 4.39988 4.59518 5.04782 5.18817 5.23245 5.30286 5.39562 5.56775 5.64668 5.80188 5.86046 5.93202 6.07003 6.10212 6.12785 6.22873 6.35854 6.41498 6.60758 6.74219 6.77179 6.95775 6.97869 7.11503 7.18633 7.22981 7.36068 7.45849 7.56296 7.81126 7.90197 8.00932 8.36593 8.97480 9.54833 11.02469 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.007144 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.830940 B = 3918.650630 C = 4331.820483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C 0.063 3.937 4 H 0.062 0.938 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.018 4.018 14 C -0.110 4.110 15 C -0.127 4.127 16 C -0.112 4.112 17 C -0.128 4.128 18 C -0.111 4.111 19 C 0.106 3.894 20 O -0.381 6.381 21 C 0.061 3.939 22 C -0.106 4.106 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.262 0.738 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.334 -5.929 -3.556 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 C 0.045 3.955 4 H 0.080 0.920 5 C -0.542 4.542 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.018 4.018 14 C -0.128 4.128 15 C -0.146 4.146 16 C -0.113 4.113 17 C -0.128 4.128 18 C -0.129 4.129 19 C 0.030 3.970 20 O -0.299 6.299 21 C -0.016 4.016 22 C -0.143 4.143 23 H 0.047 0.953 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.395 -5.546 -3.655 10.705 hybrid contribution -0.270 0.452 1.155 1.269 sum 8.126 -5.094 -2.500 9.911 Atomic orbital electron populations 1.21589 0.96645 0.98443 1.02383 1.21527 0.95409 0.98567 0.98820 1.18100 0.86247 0.91683 0.99504 0.91961 1.20916 1.46619 0.92051 0.94577 0.92636 1.24964 0.94707 0.97736 0.96062 1.69901 1.49051 1.07076 1.26085 0.86744 0.78746 0.78553 0.84533 1.20238 1.21303 1.20209 1.20733 0.99146 0.91106 0.90830 1.20930 0.92581 1.00238 0.99056 1.20871 0.95104 1.01192 0.97395 1.19098 0.94010 1.01641 0.96507 1.20021 0.94486 1.00847 0.97464 1.20895 0.92558 1.00392 0.99067 1.21372 0.80826 1.00562 0.94229 1.88007 1.20196 1.32931 1.88794 1.22549 0.96442 0.88124 0.94464 1.20973 0.93425 1.01800 0.98089 0.95291 0.92128 0.93512 0.94925 0.93643 0.92835 0.86742 0.87516 0.86587 0.92560 0.88099 0.89112 0.93046 0.90726 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.64 37.15 0.36 -2.19 16 2 C -0.11 -2.16 5.12 -26.73 -0.14 -2.30 16 3 C 0.06 1.51 2.01 -92.92 -0.19 1.32 16 4 H 0.06 1.64 7.16 -51.93 -0.37 1.27 16 5 C -0.50 -13.19 7.05 -34.44 -0.24 -13.44 16 6 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 7 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 8 N -0.88 -24.90 12.87 55.43 0.71 -24.19 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C -0.02 -0.40 4.76 -104.68 -0.50 -0.89 16 14 C -0.11 -2.30 8.88 -39.64 -0.35 -2.65 16 15 C -0.13 -2.38 9.67 -39.51 -0.38 -2.76 16 16 C -0.11 -2.05 5.77 -104.59 -0.60 -2.65 16 17 C -0.13 -2.46 5.80 -104.62 -0.61 -3.06 16 18 C -0.11 -2.38 9.30 -39.50 -0.37 -2.75 16 19 C 0.11 1.74 6.66 35.98 0.24 1.98 16 20 O -0.38 -6.20 10.80 -35.23 -0.38 -6.58 16 21 C 0.06 0.80 6.85 37.14 0.25 1.06 16 22 C -0.11 -1.51 6.00 -27.87 -0.17 -1.68 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.23 7.59 -51.93 -0.39 0.83 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.90 7.60 -51.93 -0.39 0.51 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 29 H 0.11 2.32 7.65 -52.49 -0.40 1.92 16 30 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.12 2.49 7.94 -52.48 -0.42 2.07 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -28.57 302.85 -8.66 -37.24 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.75 Total: 1.03 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: -2.79 Total: -28.25 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.71 Total: -24.19 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.38 Total: -6.58 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.57 -8.66 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261102407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.016 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds