Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47163 * 2 1 4 4 C 1.50705 * 109.47127 * 240.00060 * 2 1 3 5 5 H 1.07996 * 119.99811 * 239.99956 * 4 2 1 6 6 C 1.37878 * 119.99466 * 60.00092 * 4 2 1 7 7 N 1.31507 * 120.00382 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99490 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47005 * 90.00315 * 8 6 4 10 10 H 1.48499 * 109.47412 * 210.00133 * 8 6 4 11 11 H 1.48494 * 109.47374 * 330.00547 * 8 6 4 12 12 C 1.50699 * 109.46915 * 120.00627 * 2 1 3 13 13 C 1.38283 * 120.01167 * 59.97454 * 12 2 1 14 14 C 1.37978 * 119.96140 * 180.12895 * 13 12 2 15 15 C 1.39146 * 120.21266 * 359.93297 * 14 13 12 16 16 C 1.38369 * 119.69253 * 359.90877 * 15 14 13 17 17 C 1.38107 * 120.00384 * 240.00080 * 12 2 1 18 18 C 1.50772 * 121.40946 * 180.29282 * 16 15 14 19 19 C 1.53071 * 109.66913 * 342.21234 * 18 16 15 20 20 C 1.53417 * 108.28579 * 48.23378 * 19 18 16 21 21 H 1.08996 * 109.67618 * 55.03742 * 20 19 18 22 22 C 1.53000 * 109.68199 * 175.54645 * 20 19 18 23 23 O 1.35849 * 118.49891 * 179.85909 * 15 14 13 24 24 H 1.08997 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47389 * 299.99813 * 1 2 3 26 26 H 1.09003 * 109.46939 * 59.99676 * 1 2 3 27 27 H 0.97005 * 119.99796 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.02384 * 0.11227 * 13 12 2 29 29 H 1.07997 * 119.89115 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.84393 * 359.97061 * 17 12 2 31 31 H 1.09000 * 109.44204 * 222.15042 * 18 16 15 32 32 H 1.09007 * 109.43687 * 102.26701 * 18 16 15 33 33 H 1.09011 * 109.69943 * 288.53975 * 19 18 16 34 34 H 1.08992 * 109.70399 * 167.93791 * 19 18 16 35 35 H 1.09004 * 109.47054 * 59.99828 * 22 20 19 36 36 H 1.08998 * 109.47538 * 180.02562 * 22 20 19 37 37 H 1.09007 * 109.47260 * 300.00388 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4124 10 1 2.4874 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 6 1.6979 -2.0343 1.4496 14 6 2.1562 -2.6831 2.5778 15 6 2.9557 -2.0100 3.4964 16 6 3.2913 -0.6864 3.2727 17 6 2.8263 -0.0396 2.1396 18 6 4.1605 0.0779 4.2389 19 6 4.1919 -0.6460 5.5873 20 6 4.4800 -2.1307 5.3298 21 1 5.3980 -2.2315 4.7511 22 6 4.6285 -2.8656 6.6635 23 8 3.3851 -2.6815 4.5965 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7090 1.1615 -3.4844 28 1 1.0782 -2.5601 0.7382 29 1 1.8940 -3.7168 2.7480 30 1 3.0861 0.9943 1.9662 31 1 3.7562 1.0810 4.3752 32 1 5.1727 0.1464 3.8403 33 1 3.2275 -0.5396 6.0841 34 1 4.9771 -0.2225 6.2135 35 1 3.7055 -2.7703 7.2356 36 1 4.8334 -3.9197 6.4767 37 1 5.4527 -2.4302 7.2285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -39.060417 kcal Electronic energy + Delta-G solvation = -17645.441590 eV Core-core repulsion = 14965.775184 eV Total energy + Delta-G solvation = -2679.666406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29514 -37.58315 -34.23306 -34.13661 -31.83632 -30.63994 -29.02349 -27.06876 -25.09041 -23.91648 -22.88164 -21.86959 -20.71319 -18.80451 -17.44997 -16.41345 -15.58510 -15.32240 -14.80271 -14.31264 -14.00854 -13.77247 -13.39812 -12.99234 -12.81374 -12.68837 -12.51633 -12.15165 -11.81228 -11.56655 -11.47525 -11.10754 -10.90902 -10.82791 -10.69003 -10.46185 -10.20499 -10.09018 -9.80953 -9.36848 -8.92432 -8.35537 -8.13848 -7.27228 -5.98861 -4.05459 1.98333 2.16284 3.31091 3.37841 3.41928 3.52508 4.36759 4.49339 4.67925 4.77402 4.91319 5.15513 5.23214 5.31915 5.39172 5.45061 5.54134 5.67757 5.77254 5.89800 5.94726 6.03461 6.09543 6.12523 6.29322 6.44573 6.63081 6.88352 6.91772 6.99373 7.22792 7.23887 7.39903 7.53029 7.75187 7.95715 8.01946 8.13009 8.43039 8.97376 9.59099 11.06600 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039551 B = 0.005195 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.773266 B = 5388.985520 C = 5528.277844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.073 3.927 3 H 0.033 0.967 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.058 4.058 13 C -0.079 4.079 14 C -0.152 4.152 15 C 0.100 3.900 16 C -0.165 4.165 17 C -0.098 4.098 18 C -0.074 4.074 19 C -0.151 4.151 20 C 0.087 3.913 21 H 0.066 0.934 22 C -0.144 4.144 23 O -0.321 6.321 24 H 0.028 0.972 25 H 0.008 0.992 26 H 0.084 0.916 27 H 0.260 0.740 28 H 0.128 0.872 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.649 -3.426 14.911 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 H 0.051 0.949 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.058 4.058 13 C -0.097 4.097 14 C -0.171 4.171 15 C 0.056 3.944 16 C -0.166 4.166 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.189 4.189 20 C 0.031 3.969 21 H 0.084 0.916 22 C -0.201 4.201 23 O -0.236 6.236 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.505 -3.478 14.853 16.218 hybrid contribution 0.457 -0.227 -0.964 1.091 sum 5.962 -3.705 13.889 15.562 Atomic orbital electron populations 1.21787 0.97730 0.99254 1.00178 1.17842 0.92773 0.95312 0.88560 0.94894 1.21139 1.31034 1.12310 0.89912 0.92485 1.24956 0.95100 0.94989 0.98914 1.69887 1.36835 1.22886 1.23348 0.86597 0.79325 0.79413 0.82719 1.20662 1.21259 1.19922 1.20557 0.94823 0.94052 0.96366 1.20890 0.98812 0.94698 0.95307 1.20527 1.02355 0.99852 0.94357 1.18478 0.98121 0.90295 0.87490 1.19651 1.04719 0.93467 0.98719 1.20862 0.98106 0.99597 0.93083 1.20415 0.99125 0.98646 0.92928 1.22257 1.03035 0.95590 0.98027 1.22344 0.88747 0.92968 0.92882 0.91589 1.21781 1.02544 1.00944 0.94846 1.85920 1.49254 1.50227 1.38241 0.95300 0.97309 0.89701 0.92998 0.85437 0.86362 0.86550 0.90460 0.91052 0.90729 0.90436 0.91684 0.91683 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.78 37.16 0.33 -2.87 16 2 C 0.07 1.85 2.48 -92.92 -0.23 1.62 16 3 H 0.03 0.89 7.87 -51.93 -0.41 0.48 16 4 C -0.51 -13.81 8.24 -34.44 -0.28 -14.09 16 5 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C -0.06 -1.28 4.73 -104.65 -0.50 -1.77 16 13 C -0.08 -1.63 8.71 -39.66 -0.35 -1.97 16 14 C -0.15 -2.84 9.94 -39.34 -0.39 -3.23 16 15 C 0.10 1.81 6.47 -39.20 -0.25 1.56 16 16 C -0.16 -2.91 5.75 -104.44 -0.60 -3.51 16 17 C -0.10 -1.95 9.29 -39.53 -0.37 -2.32 16 18 C -0.07 -1.00 5.86 -27.81 -0.16 -1.17 16 19 C -0.15 -1.73 5.49 -26.48 -0.15 -1.88 16 20 C 0.09 1.07 3.42 -26.52 -0.09 0.98 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.14 -1.32 9.59 37.16 0.36 -0.97 16 23 O -0.32 -5.20 9.92 -19.27 -0.19 -5.40 16 24 H 0.03 0.66 7.39 -51.93 -0.38 0.28 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.13 2.60 7.58 -52.48 -0.40 2.21 16 29 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.12 2.18 7.94 -52.49 -0.42 1.76 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -29.13 300.25 -8.52 -37.65 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.68 Total: -0.37 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -2.78 Total: -28.02 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.63 Total: -24.64 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.19 Total: -5.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.13 -8.52 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.409 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds