Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47163 * 2 1 4 4 C 1.50705 * 109.47127 * 240.00060 * 2 1 3 5 5 H 1.07996 * 119.99811 * 239.99956 * 4 2 1 6 6 C 1.37878 * 119.99466 * 60.00092 * 4 2 1 7 7 N 1.31507 * 120.00382 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99490 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47005 * 90.00315 * 8 6 4 10 10 H 1.48499 * 109.47412 * 210.00133 * 8 6 4 11 11 H 1.48494 * 109.47374 * 330.00547 * 8 6 4 12 12 C 1.50699 * 109.46915 * 120.00627 * 2 1 3 13 13 C 1.38283 * 120.01167 * 59.97454 * 12 2 1 14 14 C 1.37978 * 119.96140 * 180.12895 * 13 12 2 15 15 C 1.39146 * 120.21266 * 359.93297 * 14 13 12 16 16 C 1.38369 * 119.69253 * 359.90877 * 15 14 13 17 17 C 1.38107 * 120.00384 * 240.00080 * 12 2 1 18 18 C 1.50772 * 121.40946 * 180.29282 * 16 15 14 19 19 C 1.53071 * 109.66913 * 342.21234 * 18 16 15 20 20 C 1.53417 * 108.28579 * 48.23378 * 19 18 16 21 21 H 1.08996 * 109.67618 * 55.03742 * 20 19 18 22 22 C 1.53000 * 109.68199 * 175.54645 * 20 19 18 23 23 O 1.35849 * 118.49891 * 179.85909 * 15 14 13 24 24 H 1.08997 * 109.47167 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47389 * 299.99813 * 1 2 3 26 26 H 1.09003 * 109.46939 * 59.99676 * 1 2 3 27 27 H 0.97005 * 119.99796 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.02384 * 0.11227 * 13 12 2 29 29 H 1.07997 * 119.89115 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.84393 * 359.97061 * 17 12 2 31 31 H 1.09000 * 109.44204 * 222.15042 * 18 16 15 32 32 H 1.09007 * 109.43687 * 102.26701 * 18 16 15 33 33 H 1.09011 * 109.69943 * 288.53975 * 19 18 16 34 34 H 1.08992 * 109.70399 * 167.93791 * 19 18 16 35 35 H 1.09004 * 109.47054 * 59.99828 * 22 20 19 36 36 H 1.08998 * 109.47538 * 180.02562 * 22 20 19 37 37 H 1.09007 * 109.47260 * 300.00388 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4124 10 1 2.4874 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 6 1.6979 -2.0343 1.4496 14 6 2.1562 -2.6831 2.5778 15 6 2.9557 -2.0100 3.4964 16 6 3.2913 -0.6864 3.2727 17 6 2.8263 -0.0396 2.1396 18 6 4.1605 0.0779 4.2389 19 6 4.1919 -0.6460 5.5873 20 6 4.4800 -2.1307 5.3298 21 1 5.3980 -2.2315 4.7511 22 6 4.6285 -2.8656 6.6635 23 8 3.3851 -2.6815 4.5965 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 0.7090 1.1615 -3.4844 28 1 1.0782 -2.5601 0.7382 29 1 1.8940 -3.7168 2.7480 30 1 3.0861 0.9943 1.9662 31 1 3.7562 1.0810 4.3752 32 1 5.1727 0.1464 3.8403 33 1 3.2275 -0.5396 6.0841 34 1 4.9771 -0.2225 6.2135 35 1 3.7055 -2.7703 7.2356 36 1 4.8334 -3.9197 6.4767 37 1 5.4527 -2.4302 7.2285 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -53.557191 kcal Electronic energy + Delta-G solvation = -17646.070218 eV Core-core repulsion = 14965.775184 eV Total energy + Delta-G solvation = -2680.295034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.57870 -39.04349 -35.99963 -35.32470 -33.42307 -32.15874 -30.42673 -28.45620 -27.19308 -25.10140 -24.13650 -23.37977 -22.22231 -20.18811 -18.78718 -18.27922 -17.12815 -16.80083 -16.31908 -15.70536 -15.32846 -15.02865 -14.89068 -14.49927 -14.16239 -14.02956 -13.66095 -13.36906 -13.24187 -13.08939 -12.97813 -12.80390 -12.64202 -12.31754 -12.21232 -12.07602 -11.72289 -11.60653 -11.16943 -11.11947 -10.92583 -10.46258 -9.60899 -8.79071 -8.08205 -6.22625 0.49333 0.64218 1.41499 1.42367 1.52658 2.36519 2.43863 2.94344 3.18811 3.70063 3.81754 3.86336 3.97898 4.21618 4.33006 4.40562 4.48283 4.56655 4.68364 4.71781 4.79878 4.89277 4.92314 4.97278 5.06223 5.11126 5.20444 5.23985 5.26962 5.29803 5.47368 5.53540 5.62809 5.70727 5.97292 6.09485 6.12310 6.38702 6.65408 6.85737 7.45110 8.95641 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039551 B = 0.005195 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.773266 B = 5388.985520 C = 5528.277844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.075 3.925 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.049 0.951 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.272 1.272 12 C -0.086 4.086 13 C -0.091 4.091 14 C -0.155 4.155 15 C 0.102 3.898 16 C -0.162 4.162 17 C -0.108 4.108 18 C -0.077 4.077 19 C -0.144 4.144 20 C 0.073 3.927 21 H 0.069 0.931 22 C -0.138 4.138 23 O -0.330 6.330 24 H 0.031 0.969 25 H 0.023 0.977 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.156 -4.154 16.800 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.056 3.944 3 H 0.022 0.978 4 C -0.558 4.558 5 H 0.067 0.933 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.087 4.087 13 C -0.109 4.109 14 C -0.174 4.174 15 C 0.058 3.942 16 C -0.163 4.163 17 C -0.126 4.126 18 C -0.114 4.114 19 C -0.182 4.182 20 C 0.017 3.983 21 H 0.087 0.913 22 C -0.195 4.195 23 O -0.246 6.246 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.155 0.845 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.018 -4.212 16.760 18.652 hybrid contribution 0.044 -0.009 -1.429 1.430 sum 7.062 -4.221 15.331 17.399 Atomic orbital electron populations 1.21627 0.97490 0.99189 0.99579 1.17691 0.93057 0.93855 0.89760 0.97769 1.21387 1.31020 1.12226 0.91202 0.93257 1.25702 0.95285 0.95684 1.01707 1.70009 1.37664 1.24000 1.23990 0.85622 0.78825 0.78424 0.79199 1.19948 1.20753 1.19666 1.20343 0.97151 0.94919 0.96246 1.20806 0.99545 0.94266 0.96248 1.20700 1.02124 1.00723 0.93832 1.18600 0.97327 0.90487 0.87810 1.20033 1.04193 0.93599 0.98464 1.20958 0.98087 0.99891 0.93672 1.20554 0.98801 0.98870 0.93201 1.22264 1.04211 0.94652 0.97050 1.22790 0.87499 0.94116 0.93853 0.91287 1.21810 1.03712 1.00829 0.93173 1.85926 1.50529 1.50605 1.37498 0.94982 0.95833 0.92166 0.92910 0.86228 0.84474 0.86258 0.89351 0.89801 0.91120 0.86799 0.91714 0.91700 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.78 71.98 0.63 -5.44 16 2 C 0.07 3.90 2.48 -12.28 -0.03 3.87 16 3 H 0.00 0.24 7.87 -2.39 -0.02 0.22 16 4 C -0.52 -29.21 8.24 25.60 0.21 -28.99 16 5 H 0.05 2.77 7.60 -2.91 -0.02 2.75 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -53.26 11.32 21.45 0.24 -53.01 16 8 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C -0.09 -3.91 4.73 -19.89 -0.09 -4.00 16 13 C -0.09 -3.79 8.71 22.22 0.19 -3.59 16 14 C -0.16 -5.70 9.94 22.43 0.22 -5.48 16 15 C 0.10 3.56 6.47 22.52 0.15 3.71 16 16 C -0.16 -5.51 5.75 -19.75 -0.11 -5.62 16 17 C -0.11 -4.30 9.29 22.30 0.21 -4.09 16 18 C -0.08 -1.88 5.86 29.89 0.18 -1.71 16 19 C -0.14 -2.75 5.49 30.76 0.17 -2.58 16 20 C 0.07 1.56 3.42 30.73 0.11 1.66 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 C -0.14 -2.03 9.59 71.98 0.69 -1.34 16 23 O -0.33 -9.95 9.92 -91.86 -0.91 -10.86 16 24 H 0.03 1.52 7.39 -2.39 -0.02 1.50 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 27 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 28 H 0.12 5.05 7.58 -2.91 -0.02 5.03 16 29 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.12 4.54 7.94 -2.91 -0.02 4.52 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -63.55 300.25 5.35 -58.20 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.03 Total: 11.87 kcal Atomic # 6 Polarization: -55.31 SS G_CDS: 2.96 Total: -52.34 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.24 Total: -53.01 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.91 Total: -10.86 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.55 5.35 -58.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.639 kcal (2) G-P(sol) polarization free energy of solvation -63.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds