Wall clock time and date at job start Mon Mar 30 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47074 * 2 1 4 4 C 1.50693 * 109.47366 * 120.00525 * 2 1 3 5 5 H 1.07998 * 120.00576 * 120.00152 * 4 2 1 6 6 C 1.37877 * 120.00020 * 299.99823 * 4 2 1 7 7 N 1.31516 * 120.00441 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99762 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47311 * 90.00322 * 8 6 4 10 10 H 1.48506 * 109.46862 * 209.99919 * 8 6 4 11 11 H 1.48497 * 109.47340 * 329.99667 * 8 6 4 12 12 C 1.50702 * 109.46842 * 240.00550 * 2 1 3 13 13 C 1.38286 * 120.01014 * 299.99758 * 12 2 1 14 14 C 1.37966 * 119.96172 * 180.02562 * 13 12 2 15 15 C 1.39146 * 120.21739 * 0.02562 * 14 13 12 16 16 C 1.38374 * 119.68940 * 359.85694 * 15 14 13 17 17 C 1.38104 * 120.00686 * 119.97618 * 12 2 1 18 18 C 1.50771 * 121.40417 * 180.45819 * 16 15 14 19 19 C 1.53071 * 109.67657 * 342.14557 * 18 16 15 20 20 C 1.53407 * 108.29757 * 48.21852 * 19 18 16 21 21 H 1.09001 * 109.68064 * 55.04541 * 20 19 18 22 22 C 1.53006 * 109.68115 * 175.56275 * 20 19 18 23 23 O 1.35838 * 118.50786 * 179.79455 * 15 14 13 24 24 H 1.09001 * 109.47462 * 59.99456 * 1 2 3 25 25 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46841 * 299.99465 * 1 2 3 27 27 H 0.96996 * 120.00500 * 180.02562 * 7 6 4 28 28 H 1.08009 * 120.02158 * 0.07420 * 13 12 2 29 29 H 1.08001 * 119.89010 * 179.97438 * 14 13 12 30 30 H 1.07993 * 119.84333 * 0.03559 * 17 12 2 31 31 H 1.08994 * 109.43764 * 222.07473 * 18 16 15 32 32 H 1.09004 * 109.43736 * 102.20340 * 18 16 15 33 33 H 1.09003 * 109.69505 * 288.51808 * 19 18 16 34 34 H 1.08997 * 109.70262 * 167.92801 * 19 18 16 35 35 H 1.09000 * 109.47038 * 60.00510 * 22 20 19 36 36 H 1.08998 * 109.46366 * 179.97438 * 22 20 19 37 37 H 1.08997 * 109.47098 * 300.00457 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 2.1382 -0.8592 3.5564 8 14 0.6248 1.2788 2.6541 9 1 -0.8028 0.8724 2.6999 10 1 0.9760 1.9948 3.9069 11 1 0.8470 2.1764 1.4922 12 6 2.0323 -0.7103 -1.2306 13 6 1.6983 -2.0342 -1.4497 14 6 2.1591 -2.6837 -2.5763 15 6 2.9601 -2.0111 -3.4940 16 6 3.2906 -0.6856 -3.2733 17 6 2.8258 -0.0391 -2.1399 18 6 4.1473 0.0831 -4.2471 19 6 4.8946 -0.8935 -5.1586 20 6 3.8881 -1.9211 -5.6917 21 1 3.0603 -1.4056 -6.1786 22 6 4.5794 -2.8475 -6.6941 23 8 3.3980 -2.6852 -4.5890 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9036 -0.5281 4.4375 28 1 1.0765 -2.5593 -0.7397 29 1 1.8980 -3.7178 -2.7461 30 1 3.0854 0.9947 -1.9665 31 1 4.8671 0.6891 -3.6970 32 1 3.5149 0.7326 -4.8524 33 1 5.6738 -1.4025 -4.5912 34 1 5.3413 -0.3504 -5.9914 35 1 5.4005 -3.3681 -6.2013 36 1 3.8614 -3.5763 -7.0701 37 1 4.9688 -2.2586 -7.5244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108336.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:43 Heat of formation + Delta-G solvation = -30.553406 kcal Electronic energy + Delta-G solvation = -17692.158426 eV Core-core repulsion = 15012.860911 eV Total energy + Delta-G solvation = -2679.297515 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36722 -37.71935 -34.32648 -34.23191 -31.91369 -31.01602 -29.28472 -27.41495 -25.02824 -23.97252 -22.99110 -22.02651 -20.77070 -18.83037 -17.52061 -16.64886 -15.88085 -15.32726 -14.93682 -14.41181 -14.06427 -13.87150 -13.50721 -13.05387 -12.89931 -12.72212 -12.63217 -12.26388 -12.15907 -12.02204 -11.84574 -11.45410 -10.97510 -10.85978 -10.84411 -10.32956 -10.18700 -10.02261 -9.89684 -9.33444 -9.07407 -8.56013 -8.21590 -7.37021 -6.06517 -4.06012 1.90511 2.06716 3.27569 3.37823 3.40310 3.47057 4.32194 4.41124 4.62846 4.73103 4.86262 5.10691 5.17548 5.26430 5.34120 5.41652 5.49964 5.63091 5.72094 5.81236 5.86025 5.92790 6.00135 6.08183 6.16284 6.31963 6.36622 6.50046 6.53884 6.72064 6.85908 6.92697 7.08706 7.20263 7.41696 7.62932 7.76336 7.90532 8.53127 8.98444 9.54767 11.06426 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044945 B = 0.005315 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.839733 B = 5267.132202 C = 5416.140488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 H 0.033 0.967 4 C -0.507 4.507 5 H 0.076 0.924 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.267 1.267 12 C -0.054 4.054 13 C -0.074 4.074 14 C -0.151 4.151 15 C 0.105 3.895 16 C -0.165 4.165 17 C -0.096 4.096 18 C -0.074 4.074 19 C -0.152 4.152 20 C 0.087 3.913 21 H 0.066 0.934 22 C -0.145 4.145 23 O -0.320 6.320 24 H 0.029 0.971 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.264 0.736 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 0.360 -18.261 18.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.022 3.978 3 H 0.051 0.949 4 C -0.545 4.545 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.192 1.192 12 C -0.055 4.055 13 C -0.092 4.092 14 C -0.170 4.170 15 C 0.061 3.939 16 C -0.166 4.166 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.190 4.190 20 C 0.031 3.969 21 H 0.084 0.916 22 C -0.202 4.202 23 O -0.235 6.235 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.436 0.154 -18.098 18.262 hybrid contribution -0.507 1.008 0.339 1.178 sum 1.929 1.163 -17.759 17.902 Atomic orbital electron populations 1.22162 0.98497 1.00897 0.98509 1.18288 0.91834 0.96023 0.91649 0.94856 1.20984 1.31970 1.13518 0.88050 0.90574 1.25004 0.95736 0.96612 0.95802 1.69892 1.45618 1.40383 0.97911 0.86837 0.80605 0.83824 0.76821 1.20611 1.22591 1.19198 1.20087 0.95835 0.94082 0.95454 1.20894 0.98685 0.94399 0.95218 1.20537 1.00443 1.00360 0.95625 1.18506 0.96471 0.90930 0.87980 1.19637 1.03979 0.94096 0.98888 1.20819 0.98051 0.99507 0.93060 1.20412 0.97653 0.97032 0.95999 1.22263 0.98703 0.97906 1.00132 1.22353 0.95823 0.92399 0.86326 0.91608 1.21785 1.00976 0.99781 0.97627 1.85935 1.78219 1.35691 1.23660 0.95146 0.92728 0.94154 0.92640 0.85159 0.86134 0.86506 0.90348 0.91121 0.90583 0.90382 0.91600 0.91663 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.49 37.16 0.32 -2.79 16 2 C 0.04 0.96 2.07 -92.93 -0.19 0.77 16 3 H 0.03 0.80 6.93 -51.93 -0.36 0.44 16 4 C -0.51 -14.15 8.82 -34.44 -0.30 -14.45 16 5 H 0.08 2.33 7.85 -52.49 -0.41 1.91 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 8 Si 0.89 21.88 24.37 -169.99 -4.14 17.73 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 12 C -0.05 -1.15 4.73 -104.65 -0.50 -1.64 16 13 C -0.07 -1.48 8.71 -39.66 -0.35 -1.82 16 14 C -0.15 -2.74 9.94 -39.34 -0.39 -3.13 16 15 C 0.11 1.84 6.47 -39.19 -0.25 1.59 16 16 C -0.17 -2.80 5.75 -104.44 -0.60 -3.40 16 17 C -0.10 -1.81 9.29 -39.53 -0.37 -2.18 16 18 C -0.07 -0.96 5.86 -27.81 -0.16 -1.12 16 19 C -0.15 -1.69 5.49 -26.48 -0.15 -1.84 16 20 C 0.09 1.03 3.42 -26.52 -0.09 0.94 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.14 -1.29 9.59 37.16 0.36 -0.93 16 23 O -0.32 -5.04 9.92 -19.23 -0.19 -5.23 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 1.14 7.39 -51.93 -0.38 0.75 16 26 H 0.04 0.91 3.27 -51.93 -0.17 0.74 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.13 2.60 7.58 -52.48 -0.40 2.20 16 29 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.12 2.03 7.94 -52.49 -0.42 1.62 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -30.70 293.43 -7.46 -38.16 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.55 Total: -0.27 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -2.77 Total: -28.11 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.19 Total: -5.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.73 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.70 -7.46 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108336.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.611 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds