Wall clock time and date at job start Mon Mar 30 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47074 * 2 1 4 4 C 1.50693 * 109.47366 * 120.00525 * 2 1 3 5 5 H 1.07998 * 120.00576 * 120.00152 * 4 2 1 6 6 C 1.37877 * 120.00020 * 299.99823 * 4 2 1 7 7 N 1.31516 * 120.00441 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99762 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47311 * 90.00322 * 8 6 4 10 10 H 1.48506 * 109.46862 * 209.99919 * 8 6 4 11 11 H 1.48497 * 109.47340 * 329.99667 * 8 6 4 12 12 C 1.50702 * 109.46842 * 240.00550 * 2 1 3 13 13 C 1.38286 * 120.01014 * 299.99758 * 12 2 1 14 14 C 1.37966 * 119.96172 * 180.02562 * 13 12 2 15 15 C 1.39146 * 120.21739 * 0.02562 * 14 13 12 16 16 C 1.38374 * 119.68940 * 359.85694 * 15 14 13 17 17 C 1.38104 * 120.00686 * 119.97618 * 12 2 1 18 18 C 1.50771 * 121.40417 * 180.45819 * 16 15 14 19 19 C 1.53071 * 109.67657 * 342.14557 * 18 16 15 20 20 C 1.53407 * 108.29757 * 48.21852 * 19 18 16 21 21 H 1.09001 * 109.68064 * 55.04541 * 20 19 18 22 22 C 1.53006 * 109.68115 * 175.56275 * 20 19 18 23 23 O 1.35838 * 118.50786 * 179.79455 * 15 14 13 24 24 H 1.09001 * 109.47462 * 59.99456 * 1 2 3 25 25 H 1.09004 * 109.47276 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46841 * 299.99465 * 1 2 3 27 27 H 0.96996 * 120.00500 * 180.02562 * 7 6 4 28 28 H 1.08009 * 120.02158 * 0.07420 * 13 12 2 29 29 H 1.08001 * 119.89010 * 179.97438 * 14 13 12 30 30 H 1.07993 * 119.84333 * 0.03559 * 17 12 2 31 31 H 1.08994 * 109.43764 * 222.07473 * 18 16 15 32 32 H 1.09004 * 109.43736 * 102.20340 * 18 16 15 33 33 H 1.09003 * 109.69505 * 288.51808 * 19 18 16 34 34 H 1.08997 * 109.70262 * 167.92801 * 19 18 16 35 35 H 1.09000 * 109.47038 * 60.00510 * 22 20 19 36 36 H 1.08998 * 109.46366 * 179.97438 * 22 20 19 37 37 H 1.08997 * 109.47098 * 300.00457 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 2.1382 -0.8592 3.5564 8 14 0.6248 1.2788 2.6541 9 1 -0.8028 0.8724 2.6999 10 1 0.9760 1.9948 3.9069 11 1 0.8470 2.1764 1.4922 12 6 2.0323 -0.7103 -1.2306 13 6 1.6983 -2.0342 -1.4497 14 6 2.1591 -2.6837 -2.5763 15 6 2.9601 -2.0111 -3.4940 16 6 3.2906 -0.6856 -3.2733 17 6 2.8258 -0.0391 -2.1399 18 6 4.1473 0.0831 -4.2471 19 6 4.8946 -0.8935 -5.1586 20 6 3.8881 -1.9211 -5.6917 21 1 3.0603 -1.4056 -6.1786 22 6 4.5794 -2.8475 -6.6941 23 8 3.3980 -2.6852 -4.5890 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9036 -0.5281 4.4375 28 1 1.0765 -2.5593 -0.7397 29 1 1.8980 -3.7178 -2.7461 30 1 3.0854 0.9947 -1.9665 31 1 4.8671 0.6891 -3.6970 32 1 3.5149 0.7326 -4.8524 33 1 5.6738 -1.4025 -4.5912 34 1 5.3413 -0.3504 -5.9914 35 1 5.4005 -3.3681 -6.2013 36 1 3.8614 -3.5763 -7.0701 37 1 4.9688 -2.2586 -7.5244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108336.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:43 Heat of formation + Delta-G solvation = -48.322594 kcal Electronic energy + Delta-G solvation = -17692.928955 eV Core-core repulsion = 15012.860911 eV Total energy + Delta-G solvation = -2680.068045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60410 -39.12547 -36.04883 -35.33243 -33.73252 -32.38139 -30.64699 -28.66420 -27.07058 -25.13141 -24.20613 -23.45780 -22.20450 -20.17494 -18.88391 -18.56458 -17.28526 -16.83902 -16.38905 -15.78263 -15.33107 -15.06543 -14.99278 -14.67095 -14.20982 -14.06808 -13.97853 -13.78237 -13.43650 -13.19033 -13.13856 -12.82972 -12.67865 -12.26927 -12.04561 -11.84629 -11.68190 -11.55232 -11.27446 -11.14905 -10.99171 -10.71514 -9.62629 -8.81486 -8.27581 -6.31784 0.47426 0.60435 1.32605 1.37647 1.48696 2.34063 2.36149 2.88288 3.08503 3.69054 3.80042 3.85143 3.98147 4.17072 4.20931 4.36407 4.44078 4.52498 4.62257 4.65168 4.68891 4.79434 4.80714 4.91571 4.93119 4.98152 5.10552 5.14097 5.20266 5.24012 5.27864 5.41774 5.52328 5.59860 5.66358 5.96601 6.02082 6.34738 6.63745 6.74689 7.32682 8.89138 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044945 B = 0.005315 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.839733 B = 5267.132202 C = 5416.140488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.043 3.957 3 H 0.034 0.966 4 C -0.508 4.508 5 H 0.030 0.970 6 C 0.011 3.989 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.266 1.266 10 H -0.300 1.300 11 H -0.245 1.245 12 C -0.084 4.084 13 C -0.089 4.089 14 C -0.159 4.159 15 C 0.106 3.894 16 C -0.163 4.163 17 C -0.102 4.102 18 C -0.076 4.076 19 C -0.147 4.147 20 C 0.074 3.926 21 H 0.075 0.925 22 C -0.140 4.140 23 O -0.332 6.332 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 2.034 -21.305 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 H 0.052 0.948 4 C -0.546 4.546 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.228 1.228 11 H -0.169 1.169 12 C -0.084 4.084 13 C -0.107 4.107 14 C -0.177 4.177 15 C 0.061 3.939 16 C -0.164 4.164 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.185 4.185 20 C 0.019 3.981 21 H 0.093 0.907 22 C -0.197 4.197 23 O -0.247 6.247 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.134 0.866 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.469 1.824 -21.181 21.402 hybrid contribution -0.404 0.369 1.151 1.275 sum 2.065 2.193 -20.030 20.255 Atomic orbital electron populations 1.22079 0.96862 1.01238 0.99560 1.18183 0.93206 0.95466 0.90759 0.94828 1.21215 1.30818 1.12221 0.90316 0.95172 1.25885 0.97329 1.00067 0.95272 1.70051 1.47827 1.42684 0.98606 0.85792 0.79048 0.79943 0.77273 1.19225 1.22795 1.16880 1.19992 0.98069 0.94711 0.95679 1.20809 0.99568 0.94408 0.95957 1.20682 1.00630 1.01079 0.95323 1.18625 0.95644 0.91199 0.88406 1.20059 1.03389 0.94075 0.98889 1.20993 0.97527 1.00184 0.93296 1.20554 0.97684 0.97322 0.95740 1.22279 0.97945 0.97449 1.00805 1.22801 0.96580 0.93247 0.85501 0.90659 1.21822 1.00544 0.99739 0.97574 1.85936 1.78036 1.36794 1.23982 0.92103 0.92929 0.94798 0.92565 0.86560 0.84790 0.85202 0.89483 0.89004 0.91696 0.86670 0.92086 0.91628 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 8.49 71.98 0.61 -5.31 16 2 C 0.04 2.01 2.07 -12.29 -0.03 1.99 16 3 H 0.03 1.57 6.93 -2.39 -0.02 1.56 16 4 C -0.51 -29.37 8.82 25.60 0.23 -29.14 16 5 H 0.03 1.96 7.85 -2.91 -0.02 1.94 16 6 C 0.01 0.65 5.45 84.65 0.46 1.11 16 7 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 8 Si 0.95 45.11 24.37 68.60 1.67 46.78 16 9 H -0.27 -11.98 6.87 99.48 0.68 -11.30 16 10 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.24 -10.65 6.53 99.48 0.65 -10.00 16 12 C -0.08 -3.59 4.73 -19.88 -0.09 -3.69 16 13 C -0.09 -3.68 8.71 22.22 0.19 -3.48 16 14 C -0.16 -5.79 9.94 22.42 0.22 -5.57 16 15 C 0.11 3.60 6.47 22.52 0.15 3.74 16 16 C -0.16 -5.25 5.75 -19.74 -0.11 -5.36 16 17 C -0.10 -3.74 9.29 22.30 0.21 -3.54 16 18 C -0.08 -1.71 5.86 29.89 0.18 -1.54 16 19 C -0.15 -2.72 5.49 30.75 0.17 -2.55 16 20 C 0.07 1.51 3.42 30.73 0.11 1.62 16 21 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 22 C -0.14 -2.01 9.59 71.98 0.69 -1.32 16 23 O -0.33 -9.87 9.92 -91.73 -0.91 -10.78 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 2.19 7.39 -2.38 -0.02 2.17 16 26 H 0.03 1.45 3.27 -2.39 -0.01 1.45 16 27 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.12 4.95 7.58 -2.91 -0.02 4.92 16 29 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.13 4.31 7.94 -2.91 -0.02 4.28 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -68.72 293.43 5.00 -63.73 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.96 Total: 13.27 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 2.97 Total: -53.04 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 0.30 Total: -59.97 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.91 Total: -10.78 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Total: -68.72 5.00 -63.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108336.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.406 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds