Wall clock time and date at job start Mon Mar 30 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52988 * 109.47504 * 2 1 4 4 O 1.42902 * 109.46901 * 120.00092 * 2 1 3 5 5 C 1.35907 * 116.99904 * 84.82403 * 4 2 1 6 6 C 1.38646 * 119.94999 * 354.58424 * 5 4 2 7 7 C 1.38119 * 119.87086 * 179.97438 * 6 5 4 8 8 C 1.38174 * 119.99716 * 0.02562 * 7 6 5 9 9 C 1.38501 * 120.33334 * 359.97438 * 8 7 6 10 10 C 1.38167 * 119.87828 * 0.02562 * 9 8 7 11 11 C 1.51364 * 109.77664 * 179.97438 * 10 9 8 12 12 H 1.09007 * 110.38471 * 258.22198 * 11 10 9 13 13 C 1.50692 * 110.30617 * 136.11308 * 11 10 9 14 14 H 1.08003 * 120.00084 * 2.80127 * 13 11 10 15 15 C 1.37875 * 120.00462 * 182.52479 * 13 11 10 16 16 N 1.31524 * 119.99734 * 0.28056 * 15 13 11 17 17 Si 1.86803 * 120.00446 * 180.27409 * 15 13 11 18 18 H 1.48493 * 109.46926 * 90.00441 * 17 15 13 19 19 H 1.48500 * 109.46986 * 210.00365 * 17 15 13 20 20 H 1.48498 * 109.46850 * 330.00020 * 17 15 13 21 21 C 1.54347 * 105.16575 * 17.18693 * 11 10 9 22 22 C 1.51378 * 130.36499 * 179.97438 * 9 8 7 23 23 H 1.08999 * 109.47091 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46527 * 300.00208 * 1 2 3 25 25 H 1.08997 * 109.46975 * 59.99914 * 1 2 3 26 26 H 1.09003 * 109.46527 * 239.99792 * 2 1 3 27 27 H 1.09004 * 109.47640 * 180.02562 * 3 2 1 28 28 H 1.09010 * 109.47170 * 300.00307 * 3 2 1 29 29 H 1.09010 * 109.47367 * 59.99887 * 3 2 1 30 30 H 1.08000 * 120.06923 * 359.96811 * 6 5 4 31 31 H 1.07996 * 120.00336 * 180.02562 * 7 6 5 32 32 H 1.07999 * 119.83760 * 180.02562 * 8 7 6 33 33 H 0.96994 * 119.99837 * 180.02562 * 16 15 13 34 34 H 1.08997 * 110.81940 * 91.88715 * 21 11 10 35 35 H 1.09005 * 110.82210 * 215.43510 * 21 11 10 36 36 H 1.08997 * 110.30846 * 43.91232 * 22 9 8 37 37 H 1.09011 * 110.38339 * 281.79896 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1090 -2.0272 1.0991 6 6 1.6534 -2.7006 -0.0240 7 6 1.7590 -4.0761 -0.0913 8 6 2.3173 -4.7783 0.9596 9 6 2.7737 -4.1099 2.0834 10 6 2.6702 -2.7339 2.1554 11 6 3.2339 -2.2461 3.4727 12 1 2.4273 -2.0171 4.1693 13 6 4.0960 -1.0296 3.2542 14 1 4.1953 -0.6088 2.2645 15 6 4.7536 -0.4504 4.3186 16 7 4.6329 -0.9629 5.5239 17 14 5.8163 1.0621 4.0490 18 1 4.9892 2.2841 4.2157 19 1 6.9217 1.0735 5.0405 20 1 6.3826 1.0309 2.6766 21 6 4.0857 -3.4175 4.0060 22 6 3.4139 -4.6416 3.3479 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.2168 -2.1507 -0.8446 31 1 1.4053 -4.6027 -0.9653 32 1 2.3990 -5.8538 0.9040 33 1 5.0952 -0.5552 6.2727 34 1 5.1218 -3.3225 3.6811 35 1 4.0232 -3.4789 5.0925 36 1 4.1604 -5.3977 3.1049 37 1 2.6557 -5.0589 4.0108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:21 Heat of formation + Delta-G solvation = -26.689264 kcal Electronic energy + Delta-G solvation = -18238.894857 eV Core-core repulsion = 15559.764904 eV Total energy + Delta-G solvation = -2679.129953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88392 -37.83846 -34.83310 -32.86313 -32.14884 -29.51387 -28.05645 -27.27722 -26.73542 -23.61253 -22.35990 -21.19822 -19.63784 -19.46607 -17.16706 -16.28996 -15.35587 -14.95810 -14.77693 -14.38095 -14.08781 -13.61224 -13.54206 -12.74647 -12.49911 -12.16991 -12.07463 -12.01612 -11.79006 -11.40344 -11.23440 -10.92971 -10.74578 -10.59671 -10.54508 -10.44598 -10.27118 -10.16964 -9.74316 -9.29148 -8.89364 -8.31212 -7.78191 -7.27218 -5.90479 -3.90055 2.02222 2.18269 3.37113 3.43099 3.47268 3.85544 4.44081 4.56400 5.04468 5.17864 5.24683 5.31482 5.43070 5.47879 5.59457 5.70030 5.79238 5.89257 5.93229 6.00748 6.05950 6.20476 6.21970 6.30208 6.34680 6.41930 6.62114 6.87580 6.92027 7.03546 7.16394 7.26761 7.38813 7.63493 7.70200 7.89280 8.08698 8.23776 8.53888 9.11480 9.71608 11.19246 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.010954 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.261571 B = 2555.422232 C = 3993.456053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 C -0.147 4.147 4 O -0.282 6.282 5 C 0.142 3.858 6 C -0.224 4.224 7 C -0.106 4.106 8 C -0.154 4.154 9 C -0.074 4.074 10 C -0.081 4.081 11 C 0.086 3.914 12 H 0.042 0.958 13 C -0.490 4.490 14 H 0.061 0.939 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.090 4.090 22 C -0.087 4.087 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.258 0.742 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 -2.204 -9.982 11.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 C -0.204 4.204 4 O -0.195 6.195 5 C 0.097 3.903 6 C -0.243 4.243 7 C -0.124 4.124 8 C -0.172 4.172 9 C -0.075 4.075 10 C -0.082 4.082 11 C 0.068 3.932 12 H 0.059 0.941 13 C -0.528 4.528 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.128 4.128 22 C -0.125 4.125 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.979 -2.028 -9.635 11.519 hybrid contribution 0.435 0.778 -0.429 0.989 sum -5.544 -1.250 -10.064 11.558 Atomic orbital electron populations 1.22376 0.95918 1.02705 1.02501 1.22311 0.93716 0.93895 0.88508 1.21808 1.02370 0.93921 1.02303 1.86428 1.80373 1.16324 1.36380 1.18677 0.95622 0.82460 0.93581 1.21038 1.08959 0.95458 0.98848 1.20536 1.00355 0.93364 0.98122 1.20401 1.03682 0.98958 0.94184 1.20630 0.97669 0.93828 0.95330 1.20719 0.97470 0.92761 0.97257 1.18265 0.94189 0.93979 0.86751 0.94075 1.21070 1.26774 1.10485 0.94498 0.92076 1.24934 0.96909 0.97067 0.95229 1.69962 1.43791 1.40634 0.99155 0.86641 0.80144 0.83738 0.77765 1.20839 1.21489 1.20056 1.22238 0.98991 0.91905 0.99703 1.21259 0.98528 0.99609 0.93056 0.92047 0.91512 0.91817 0.91695 0.91593 0.91421 0.91404 0.86244 0.86918 0.87299 0.93248 0.92294 0.91182 0.92292 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 9.17 37.16 0.34 -2.01 16 2 C 0.07 1.14 2.85 -26.73 -0.08 1.06 16 3 C -0.15 -2.08 9.56 37.15 0.36 -1.73 16 4 O -0.28 -5.94 8.35 -19.45 -0.16 -6.10 16 5 C 0.14 3.00 6.44 -39.17 -0.25 2.75 16 6 C -0.22 -3.96 8.23 -39.47 -0.32 -4.28 16 7 C -0.11 -1.74 10.04 -39.65 -0.40 -2.14 16 8 C -0.15 -2.71 10.04 -39.51 -0.40 -3.11 16 9 C -0.07 -1.53 6.14 -104.22 -0.64 -2.16 16 10 C -0.08 -1.88 5.57 -104.06 -0.58 -2.46 16 11 C 0.09 2.23 2.78 -91.90 -0.26 1.98 16 12 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.49 -13.77 7.87 -34.45 -0.27 -14.04 16 14 H 0.06 1.75 6.82 -52.48 -0.36 1.39 16 15 C 0.06 1.66 5.33 -17.82 -0.09 1.57 16 16 N -0.90 -25.91 12.31 55.43 0.68 -25.23 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.09 -2.14 5.64 -25.31 -0.14 -2.28 16 22 C -0.09 -1.71 6.77 -26.84 -0.18 -1.90 16 23 H 0.06 0.83 6.89 -51.93 -0.36 0.47 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.95 6.31 -51.93 -0.33 0.62 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.12 1.78 5.41 -52.49 -0.28 1.50 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.06 1.47 7.91 -51.93 -0.41 1.06 16 35 H 0.07 1.71 7.88 -51.93 -0.41 1.30 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -30.00 298.72 -8.43 -38.43 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.51 Total: 0.27 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -2.92 Total: -28.75 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.68 Total: -25.23 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.16 Total: -6.10 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.00 -8.43 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.738 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds